aws-sdk-omics 1.1.0 → 1.2.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/CHANGELOG.md +5 -0
- data/VERSION +1 -1
- data/lib/aws-sdk-omics/client.rb +40 -35
- data/lib/aws-sdk-omics/client_api.rb +3 -1
- data/lib/aws-sdk-omics/endpoint_parameters.rb +0 -3
- data/lib/aws-sdk-omics/endpoint_provider.rb +27 -24
- data/lib/aws-sdk-omics/types.rb +31 -22
- data/lib/aws-sdk-omics.rb +1 -1
- metadata +2 -2
checksums.yaml
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
---
|
|
2
2
|
SHA256:
|
|
3
|
-
metadata.gz:
|
|
4
|
-
data.tar.gz:
|
|
3
|
+
metadata.gz: 0b0791e4b602ac2269a7790f89b7a057987123d5a11cd08f2749166e933481d1
|
|
4
|
+
data.tar.gz: 39083baf75b0bd58f22573df3c181989060335576a09e085efd02fbf1997c972
|
|
5
5
|
SHA512:
|
|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
|
|
6
|
+
metadata.gz: 2a8a6efece95aa42c7bb7c7370a13c82925c808d60d7b8077170901965dcd6baac0e68dabf39736b968cd79fa74f2ca3d3b461b895b4b77cffe54a09bd374a46
|
|
7
|
+
data.tar.gz: 904f47cb3fb751a21a52c4dd521ee63c60c5f2567aff9b2fbbbac8b115a285c5f730ac5fdd65f6293b159b9f167c378e4704c414854ba913a8bb97eed4fe655e
|
data/CHANGELOG.md
CHANGED
data/VERSION
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
1.
|
|
1
|
+
1.2.0
|
data/lib/aws-sdk-omics/client.rb
CHANGED
|
@@ -523,7 +523,7 @@ module Aws::Omics
|
|
|
523
523
|
# },
|
|
524
524
|
# schema: [
|
|
525
525
|
# {
|
|
526
|
-
# "
|
|
526
|
+
# "SchemaItemKeyString" => "LONG", # accepts LONG, INT, STRING, FLOAT, DOUBLE, BOOLEAN
|
|
527
527
|
# },
|
|
528
528
|
# ],
|
|
529
529
|
# },
|
|
@@ -546,7 +546,7 @@ module Aws::Omics
|
|
|
546
546
|
# resp.store_options.tsv_store_options.format_to_header["FormatToHeaderKey"] #=> String
|
|
547
547
|
# resp.store_options.tsv_store_options.schema #=> Array
|
|
548
548
|
# resp.store_options.tsv_store_options.schema[0] #=> Hash
|
|
549
|
-
# resp.store_options.tsv_store_options.schema[0]["
|
|
549
|
+
# resp.store_options.tsv_store_options.schema[0]["SchemaItemKeyString"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN"
|
|
550
550
|
#
|
|
551
551
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateAnnotationStore AWS API Documentation
|
|
552
552
|
#
|
|
@@ -624,7 +624,7 @@ module Aws::Omics
|
|
|
624
624
|
# The maximum number of CPUs to use in the group.
|
|
625
625
|
#
|
|
626
626
|
# @option params [Integer] :max_duration
|
|
627
|
-
# A
|
|
627
|
+
# A maximum run time for the group in minutes.
|
|
628
628
|
#
|
|
629
629
|
# @option params [Integer] :max_runs
|
|
630
630
|
# The maximum number of concurrent runs for the group.
|
|
@@ -633,7 +633,8 @@ module Aws::Omics
|
|
|
633
633
|
# A name for the group.
|
|
634
634
|
#
|
|
635
635
|
# @option params [required, String] :request_id
|
|
636
|
-
#
|
|
636
|
+
# To ensure that requests don't run multiple times, specify a unique ID
|
|
637
|
+
# for each request.
|
|
637
638
|
#
|
|
638
639
|
# **A suitable default value is auto-generated.** You should normally
|
|
639
640
|
# not need to pass this option.**
|
|
@@ -820,13 +821,14 @@ module Aws::Omics
|
|
|
820
821
|
# A parameter template for the workflow.
|
|
821
822
|
#
|
|
822
823
|
# @option params [required, String] :request_id
|
|
823
|
-
#
|
|
824
|
+
# To ensure that requests don't run multiple times, specify a unique ID
|
|
825
|
+
# for each request.
|
|
824
826
|
#
|
|
825
827
|
# **A suitable default value is auto-generated.** You should normally
|
|
826
828
|
# not need to pass this option.**
|
|
827
829
|
#
|
|
828
830
|
# @option params [Integer] :storage_capacity
|
|
829
|
-
# A storage capacity for the workflow.
|
|
831
|
+
# A storage capacity for the workflow in gigabytes.
|
|
830
832
|
#
|
|
831
833
|
# @option params [Hash<String,String>] :tags
|
|
832
834
|
# Tags for the workflow.
|
|
@@ -864,7 +866,7 @@ module Aws::Omics
|
|
|
864
866
|
#
|
|
865
867
|
# resp.arn #=> String
|
|
866
868
|
# resp.id #=> String
|
|
867
|
-
# resp.status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED"
|
|
869
|
+
# resp.status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED", "INACTIVE"
|
|
868
870
|
# resp.tags #=> Hash
|
|
869
871
|
# resp.tags["TagKey"] #=> String
|
|
870
872
|
#
|
|
@@ -1120,11 +1122,11 @@ module Aws::Omics
|
|
|
1120
1122
|
# resp.format_options.vcf_options.ignore_qual_field #=> Boolean
|
|
1121
1123
|
# resp.id #=> String
|
|
1122
1124
|
# resp.items #=> Array
|
|
1123
|
-
# resp.items[0].job_status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED"
|
|
1125
|
+
# resp.items[0].job_status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
|
|
1124
1126
|
# resp.items[0].source #=> String
|
|
1125
1127
|
# resp.role_arn #=> String
|
|
1126
1128
|
# resp.run_left_normalization #=> Boolean
|
|
1127
|
-
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED"
|
|
1129
|
+
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
|
|
1128
1130
|
# resp.status_message #=> String
|
|
1129
1131
|
# resp.update_time #=> Time
|
|
1130
1132
|
#
|
|
@@ -1188,7 +1190,7 @@ module Aws::Omics
|
|
|
1188
1190
|
# resp.store_options.tsv_store_options.format_to_header["FormatToHeaderKey"] #=> String
|
|
1189
1191
|
# resp.store_options.tsv_store_options.schema #=> Array
|
|
1190
1192
|
# resp.store_options.tsv_store_options.schema[0] #=> Hash
|
|
1191
|
-
# resp.store_options.tsv_store_options.schema[0]["
|
|
1193
|
+
# resp.store_options.tsv_store_options.schema[0]["SchemaItemKeyString"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN"
|
|
1192
1194
|
# resp.store_size_bytes #=> Integer
|
|
1193
1195
|
# resp.tags #=> Hash
|
|
1194
1196
|
# resp.tags["TagKey"] #=> String
|
|
@@ -1748,7 +1750,7 @@ module Aws::Omics
|
|
|
1748
1750
|
# resp.tags #=> Hash
|
|
1749
1751
|
# resp.tags["TagKey"] #=> String
|
|
1750
1752
|
# resp.workflow_id #=> String
|
|
1751
|
-
# resp.workflow_type #=> String, one of "PRIVATE"
|
|
1753
|
+
# resp.workflow_type #=> String, one of "PRIVATE", "SERVICE"
|
|
1752
1754
|
#
|
|
1753
1755
|
#
|
|
1754
1756
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
|
@@ -1934,11 +1936,12 @@ module Aws::Omics
|
|
|
1934
1936
|
# resp.destination_name #=> String
|
|
1935
1937
|
# resp.id #=> String
|
|
1936
1938
|
# resp.items #=> Array
|
|
1937
|
-
# resp.items[0].job_status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED"
|
|
1939
|
+
# resp.items[0].job_status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
|
|
1938
1940
|
# resp.items[0].source #=> String
|
|
1941
|
+
# resp.items[0].status_message #=> String
|
|
1939
1942
|
# resp.role_arn #=> String
|
|
1940
1943
|
# resp.run_left_normalization #=> Boolean
|
|
1941
|
-
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED"
|
|
1944
|
+
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
|
|
1942
1945
|
# resp.status_message #=> String
|
|
1943
1946
|
# resp.update_time #=> Time
|
|
1944
1947
|
#
|
|
@@ -2048,7 +2051,7 @@ module Aws::Omics
|
|
|
2048
2051
|
# resp = client.get_workflow({
|
|
2049
2052
|
# export: ["DEFINITION"], # accepts DEFINITION
|
|
2050
2053
|
# id: "WorkflowId", # required
|
|
2051
|
-
# type: "PRIVATE", # accepts PRIVATE
|
|
2054
|
+
# type: "PRIVATE", # accepts PRIVATE, SERVICE
|
|
2052
2055
|
# })
|
|
2053
2056
|
#
|
|
2054
2057
|
# @example Response structure
|
|
@@ -2065,12 +2068,12 @@ module Aws::Omics
|
|
|
2065
2068
|
# resp.parameter_template #=> Hash
|
|
2066
2069
|
# resp.parameter_template["WorkflowParameterName"].description #=> String
|
|
2067
2070
|
# resp.parameter_template["WorkflowParameterName"].optional #=> Boolean
|
|
2068
|
-
# resp.status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED"
|
|
2071
|
+
# resp.status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED", "INACTIVE"
|
|
2069
2072
|
# resp.status_message #=> String
|
|
2070
2073
|
# resp.storage_capacity #=> Integer
|
|
2071
2074
|
# resp.tags #=> Hash
|
|
2072
2075
|
# resp.tags["TagKey"] #=> String
|
|
2073
|
-
# resp.type #=> String, one of "PRIVATE"
|
|
2076
|
+
# resp.type #=> String, one of "PRIVATE", "SERVICE"
|
|
2074
2077
|
#
|
|
2075
2078
|
#
|
|
2076
2079
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
|
@@ -2112,7 +2115,7 @@ module Aws::Omics
|
|
|
2112
2115
|
#
|
|
2113
2116
|
# resp = client.list_annotation_import_jobs({
|
|
2114
2117
|
# filter: {
|
|
2115
|
-
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLED, COMPLETED, FAILED
|
|
2118
|
+
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLED, COMPLETED, FAILED, COMPLETED_WITH_FAILURES
|
|
2116
2119
|
# store_name: "String",
|
|
2117
2120
|
# },
|
|
2118
2121
|
# ids: ["ResourceIdentifier"],
|
|
@@ -2129,7 +2132,7 @@ module Aws::Omics
|
|
|
2129
2132
|
# resp.annotation_import_jobs[0].id #=> String
|
|
2130
2133
|
# resp.annotation_import_jobs[0].role_arn #=> String
|
|
2131
2134
|
# resp.annotation_import_jobs[0].run_left_normalization #=> Boolean
|
|
2132
|
-
# resp.annotation_import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED"
|
|
2135
|
+
# resp.annotation_import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
|
|
2133
2136
|
# resp.annotation_import_jobs[0].update_time #=> Time
|
|
2134
2137
|
# resp.next_token #=> String
|
|
2135
2138
|
#
|
|
@@ -2862,7 +2865,7 @@ module Aws::Omics
|
|
|
2862
2865
|
#
|
|
2863
2866
|
# resp = client.list_variant_import_jobs({
|
|
2864
2867
|
# filter: {
|
|
2865
|
-
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLED, COMPLETED, FAILED
|
|
2868
|
+
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLED, COMPLETED, FAILED, COMPLETED_WITH_FAILURES
|
|
2866
2869
|
# store_name: "String",
|
|
2867
2870
|
# },
|
|
2868
2871
|
# ids: ["ResourceIdentifier"],
|
|
@@ -2880,7 +2883,7 @@ module Aws::Omics
|
|
|
2880
2883
|
# resp.variant_import_jobs[0].id #=> String
|
|
2881
2884
|
# resp.variant_import_jobs[0].role_arn #=> String
|
|
2882
2885
|
# resp.variant_import_jobs[0].run_left_normalization #=> Boolean
|
|
2883
|
-
# resp.variant_import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED"
|
|
2886
|
+
# resp.variant_import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
|
|
2884
2887
|
# resp.variant_import_jobs[0].update_time #=> Time
|
|
2885
2888
|
#
|
|
2886
2889
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListVariantImportJobs AWS API Documentation
|
|
@@ -2979,7 +2982,7 @@ module Aws::Omics
|
|
|
2979
2982
|
# max_results: 1,
|
|
2980
2983
|
# name: "WorkflowName",
|
|
2981
2984
|
# starting_token: "WorkflowListToken",
|
|
2982
|
-
# type: "PRIVATE", # accepts PRIVATE
|
|
2985
|
+
# type: "PRIVATE", # accepts PRIVATE, SERVICE
|
|
2983
2986
|
# })
|
|
2984
2987
|
#
|
|
2985
2988
|
# @example Response structure
|
|
@@ -2990,8 +2993,8 @@ module Aws::Omics
|
|
|
2990
2993
|
# resp.items[0].digest #=> String
|
|
2991
2994
|
# resp.items[0].id #=> String
|
|
2992
2995
|
# resp.items[0].name #=> String
|
|
2993
|
-
# resp.items[0].status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED"
|
|
2994
|
-
# resp.items[0].type #=> String, one of "PRIVATE"
|
|
2996
|
+
# resp.items[0].status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED", "INACTIVE"
|
|
2997
|
+
# resp.items[0].type #=> String, one of "PRIVATE", "SERVICE"
|
|
2995
2998
|
# resp.next_token #=> String
|
|
2996
2999
|
#
|
|
2997
3000
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListWorkflows AWS API Documentation
|
|
@@ -3069,7 +3072,8 @@ module Aws::Omics
|
|
|
3069
3072
|
req.send_request(options)
|
|
3070
3073
|
end
|
|
3071
3074
|
|
|
3072
|
-
#
|
|
3075
|
+
# Activates an archived read set. To reduce storage charges, Amazon
|
|
3076
|
+
# Omics archives unused read sets after 30 days.
|
|
3073
3077
|
#
|
|
3074
3078
|
# @option params [String] :client_token
|
|
3075
3079
|
# To ensure that jobs don't run multiple times, specify a unique token
|
|
@@ -3079,7 +3083,7 @@ module Aws::Omics
|
|
|
3079
3083
|
# The read set's sequence store ID.
|
|
3080
3084
|
#
|
|
3081
3085
|
# @option params [required, Array<Types::StartReadSetActivationJobSourceItem>] :sources
|
|
3082
|
-
# The job's
|
|
3086
|
+
# The job's source files.
|
|
3083
3087
|
#
|
|
3084
3088
|
# @return [Types::StartReadSetActivationJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
|
3085
3089
|
#
|
|
@@ -3116,7 +3120,7 @@ module Aws::Omics
|
|
|
3116
3120
|
req.send_request(options)
|
|
3117
3121
|
end
|
|
3118
3122
|
|
|
3119
|
-
#
|
|
3123
|
+
# Exports a read set to Amazon S3.
|
|
3120
3124
|
#
|
|
3121
3125
|
# @option params [String] :client_token
|
|
3122
3126
|
# To ensure that jobs don't run multiple times, specify a unique token
|
|
@@ -3132,7 +3136,7 @@ module Aws::Omics
|
|
|
3132
3136
|
# The read set's sequence store ID.
|
|
3133
3137
|
#
|
|
3134
3138
|
# @option params [required, Array<Types::ExportReadSet>] :sources
|
|
3135
|
-
#
|
|
3139
|
+
# The job's source files.
|
|
3136
3140
|
#
|
|
3137
3141
|
# @return [Types::StartReadSetExportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
|
3138
3142
|
#
|
|
@@ -3186,7 +3190,7 @@ module Aws::Omics
|
|
|
3186
3190
|
# The read set's sequence store ID.
|
|
3187
3191
|
#
|
|
3188
3192
|
# @option params [required, Array<Types::StartReadSetImportJobSourceItem>] :sources
|
|
3189
|
-
#
|
|
3193
|
+
# The job's source files.
|
|
3190
3194
|
#
|
|
3191
3195
|
# @return [Types::StartReadSetImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
|
3192
3196
|
#
|
|
@@ -3252,7 +3256,7 @@ module Aws::Omics
|
|
|
3252
3256
|
# A service role for the job.
|
|
3253
3257
|
#
|
|
3254
3258
|
# @option params [required, Array<Types::StartReferenceImportJobSourceItem>] :sources
|
|
3255
|
-
#
|
|
3259
|
+
# The job's source files.
|
|
3256
3260
|
#
|
|
3257
3261
|
# @return [Types::StartReferenceImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
|
3258
3262
|
#
|
|
@@ -3320,7 +3324,8 @@ module Aws::Omics
|
|
|
3320
3324
|
# A priority for the run.
|
|
3321
3325
|
#
|
|
3322
3326
|
# @option params [required, String] :request_id
|
|
3323
|
-
#
|
|
3327
|
+
# To ensure that requests don't run multiple times, specify a unique ID
|
|
3328
|
+
# for each request.
|
|
3324
3329
|
#
|
|
3325
3330
|
# **A suitable default value is auto-generated.** You should normally
|
|
3326
3331
|
# not need to pass this option.**
|
|
@@ -3335,7 +3340,7 @@ module Aws::Omics
|
|
|
3335
3340
|
# The run's ID.
|
|
3336
3341
|
#
|
|
3337
3342
|
# @option params [Integer] :storage_capacity
|
|
3338
|
-
# A storage capacity for the run.
|
|
3343
|
+
# A storage capacity for the run in gigabytes.
|
|
3339
3344
|
#
|
|
3340
3345
|
# @option params [Hash<String,String>] :tags
|
|
3341
3346
|
# Tags for the run.
|
|
@@ -3371,7 +3376,7 @@ module Aws::Omics
|
|
|
3371
3376
|
# "TagKey" => "TagValue",
|
|
3372
3377
|
# },
|
|
3373
3378
|
# workflow_id: "WorkflowId",
|
|
3374
|
-
# workflow_type: "PRIVATE", # accepts PRIVATE
|
|
3379
|
+
# workflow_type: "PRIVATE", # accepts PRIVATE, SERVICE
|
|
3375
3380
|
# })
|
|
3376
3381
|
#
|
|
3377
3382
|
# @example Response structure
|
|
@@ -3530,7 +3535,7 @@ module Aws::Omics
|
|
|
3530
3535
|
# resp.store_options.tsv_store_options.format_to_header["FormatToHeaderKey"] #=> String
|
|
3531
3536
|
# resp.store_options.tsv_store_options.schema #=> Array
|
|
3532
3537
|
# resp.store_options.tsv_store_options.schema[0] #=> Hash
|
|
3533
|
-
# resp.store_options.tsv_store_options.schema[0]["
|
|
3538
|
+
# resp.store_options.tsv_store_options.schema[0]["SchemaItemKeyString"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN"
|
|
3534
3539
|
# resp.update_time #=> Time
|
|
3535
3540
|
#
|
|
3536
3541
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateAnnotationStore AWS API Documentation
|
|
@@ -3551,7 +3556,7 @@ module Aws::Omics
|
|
|
3551
3556
|
# The maximum number of CPUs to use.
|
|
3552
3557
|
#
|
|
3553
3558
|
# @option params [Integer] :max_duration
|
|
3554
|
-
#
|
|
3559
|
+
# A maximum run time for the group in minutes.
|
|
3555
3560
|
#
|
|
3556
3561
|
# @option params [Integer] :max_runs
|
|
3557
3562
|
# The maximum number of concurrent runs for the group.
|
|
@@ -3667,7 +3672,7 @@ module Aws::Omics
|
|
|
3667
3672
|
params: params,
|
|
3668
3673
|
config: config)
|
|
3669
3674
|
context[:gem_name] = 'aws-sdk-omics'
|
|
3670
|
-
context[:gem_version] = '1.
|
|
3675
|
+
context[:gem_version] = '1.2.0'
|
|
3671
3676
|
Seahorse::Client::Request.new(handlers, context)
|
|
3672
3677
|
end
|
|
3673
3678
|
|
|
@@ -314,6 +314,7 @@ module Aws::Omics
|
|
|
314
314
|
S3Uri = Shapes::StringShape.new(name: 'S3Uri')
|
|
315
315
|
SampleId = Shapes::StringShape.new(name: 'SampleId')
|
|
316
316
|
SchemaItem = Shapes::MapShape.new(name: 'SchemaItem')
|
|
317
|
+
SchemaItemKeyString = Shapes::StringShape.new(name: 'SchemaItemKeyString')
|
|
317
318
|
SchemaValueType = Shapes::StringShape.new(name: 'SchemaValueType')
|
|
318
319
|
Separator = Shapes::StringShape.new(name: 'Separator')
|
|
319
320
|
SequenceInformation = Shapes::StructureShape.new(name: 'SequenceInformation')
|
|
@@ -1343,7 +1344,7 @@ module Aws::Omics
|
|
|
1343
1344
|
RunResourceDigests.key = Shapes::ShapeRef.new(shape: RunResourceDigestKey)
|
|
1344
1345
|
RunResourceDigests.value = Shapes::ShapeRef.new(shape: RunResourceDigest)
|
|
1345
1346
|
|
|
1346
|
-
SchemaItem.key = Shapes::ShapeRef.new(shape:
|
|
1347
|
+
SchemaItem.key = Shapes::ShapeRef.new(shape: SchemaItemKeyString)
|
|
1347
1348
|
SchemaItem.value = Shapes::ShapeRef.new(shape: SchemaValueType)
|
|
1348
1349
|
|
|
1349
1350
|
SequenceInformation.add_member(:alignment, Shapes::ShapeRef.new(shape: String, location_name: "alignment"))
|
|
@@ -1593,6 +1594,7 @@ module Aws::Omics
|
|
|
1593
1594
|
|
|
1594
1595
|
VariantImportItemDetail.add_member(:job_status, Shapes::ShapeRef.new(shape: JobStatus, required: true, location_name: "jobStatus"))
|
|
1595
1596
|
VariantImportItemDetail.add_member(:source, Shapes::ShapeRef.new(shape: S3Uri, required: true, location_name: "source"))
|
|
1597
|
+
VariantImportItemDetail.add_member(:status_message, Shapes::ShapeRef.new(shape: JobStatusMsg, location_name: "statusMessage"))
|
|
1596
1598
|
VariantImportItemDetail.struct_class = Types::VariantImportItemDetail
|
|
1597
1599
|
|
|
1598
1600
|
VariantImportItemDetails.member = Shapes::ShapeRef.new(shape: VariantImportItemDetail)
|
|
@@ -50,9 +50,6 @@ module Aws::Omics
|
|
|
50
50
|
|
|
51
51
|
def initialize(options = {})
|
|
52
52
|
self[:region] = options[:region]
|
|
53
|
-
if self[:region].nil?
|
|
54
|
-
raise ArgumentError, "Missing required EndpointParameter: :region"
|
|
55
|
-
end
|
|
56
53
|
self[:use_dual_stack] = options[:use_dual_stack]
|
|
57
54
|
self[:use_dual_stack] = false if self[:use_dual_stack].nil?
|
|
58
55
|
if self[:use_dual_stack].nil?
|
|
@@ -14,36 +14,39 @@ module Aws::Omics
|
|
|
14
14
|
use_dual_stack = parameters.use_dual_stack
|
|
15
15
|
use_fips = parameters.use_fips
|
|
16
16
|
endpoint = parameters.endpoint
|
|
17
|
-
if
|
|
18
|
-
if Aws::Endpoints::Matchers.set?(endpoint) && (url = Aws::Endpoints::Matchers.parse_url(endpoint))
|
|
19
|
-
if Aws::Endpoints::Matchers.boolean_equals?(use_fips, true)
|
|
20
|
-
raise ArgumentError, "Invalid Configuration: FIPS and custom endpoint are not supported"
|
|
21
|
-
end
|
|
22
|
-
if Aws::Endpoints::Matchers.boolean_equals?(use_dual_stack, true)
|
|
23
|
-
raise ArgumentError, "Invalid Configuration: Dualstack and custom endpoint are not supported"
|
|
24
|
-
end
|
|
25
|
-
return Aws::Endpoints::Endpoint.new(url: endpoint, headers: {}, properties: {})
|
|
26
|
-
end
|
|
27
|
-
if Aws::Endpoints::Matchers.boolean_equals?(use_fips, true) && Aws::Endpoints::Matchers.boolean_equals?(use_dual_stack, true)
|
|
28
|
-
if Aws::Endpoints::Matchers.boolean_equals?(true, Aws::Endpoints::Matchers.attr(partition_result, "supportsFIPS")) && Aws::Endpoints::Matchers.boolean_equals?(true, Aws::Endpoints::Matchers.attr(partition_result, "supportsDualStack"))
|
|
29
|
-
return Aws::Endpoints::Endpoint.new(url: "https://omics-fips.#{region}.#{partition_result['dualStackDnsSuffix']}", headers: {}, properties: {})
|
|
30
|
-
end
|
|
31
|
-
raise ArgumentError, "FIPS and DualStack are enabled, but this partition does not support one or both"
|
|
32
|
-
end
|
|
17
|
+
if Aws::Endpoints::Matchers.set?(endpoint)
|
|
33
18
|
if Aws::Endpoints::Matchers.boolean_equals?(use_fips, true)
|
|
34
|
-
|
|
35
|
-
return Aws::Endpoints::Endpoint.new(url: "https://omics-fips.#{region}.#{partition_result['dnsSuffix']}", headers: {}, properties: {})
|
|
36
|
-
end
|
|
37
|
-
raise ArgumentError, "FIPS is enabled but this partition does not support FIPS"
|
|
19
|
+
raise ArgumentError, "Invalid Configuration: FIPS and custom endpoint are not supported"
|
|
38
20
|
end
|
|
39
21
|
if Aws::Endpoints::Matchers.boolean_equals?(use_dual_stack, true)
|
|
40
|
-
|
|
41
|
-
|
|
22
|
+
raise ArgumentError, "Invalid Configuration: Dualstack and custom endpoint are not supported"
|
|
23
|
+
end
|
|
24
|
+
return Aws::Endpoints::Endpoint.new(url: endpoint, headers: {}, properties: {})
|
|
25
|
+
end
|
|
26
|
+
if Aws::Endpoints::Matchers.set?(region)
|
|
27
|
+
if (partition_result = Aws::Endpoints::Matchers.aws_partition(region))
|
|
28
|
+
if Aws::Endpoints::Matchers.boolean_equals?(use_fips, true) && Aws::Endpoints::Matchers.boolean_equals?(use_dual_stack, true)
|
|
29
|
+
if Aws::Endpoints::Matchers.boolean_equals?(true, Aws::Endpoints::Matchers.attr(partition_result, "supportsFIPS")) && Aws::Endpoints::Matchers.boolean_equals?(true, Aws::Endpoints::Matchers.attr(partition_result, "supportsDualStack"))
|
|
30
|
+
return Aws::Endpoints::Endpoint.new(url: "https://omics-fips.#{region}.#{partition_result['dualStackDnsSuffix']}", headers: {}, properties: {})
|
|
31
|
+
end
|
|
32
|
+
raise ArgumentError, "FIPS and DualStack are enabled, but this partition does not support one or both"
|
|
33
|
+
end
|
|
34
|
+
if Aws::Endpoints::Matchers.boolean_equals?(use_fips, true)
|
|
35
|
+
if Aws::Endpoints::Matchers.boolean_equals?(true, Aws::Endpoints::Matchers.attr(partition_result, "supportsFIPS"))
|
|
36
|
+
return Aws::Endpoints::Endpoint.new(url: "https://omics-fips.#{region}.#{partition_result['dnsSuffix']}", headers: {}, properties: {})
|
|
37
|
+
end
|
|
38
|
+
raise ArgumentError, "FIPS is enabled but this partition does not support FIPS"
|
|
39
|
+
end
|
|
40
|
+
if Aws::Endpoints::Matchers.boolean_equals?(use_dual_stack, true)
|
|
41
|
+
if Aws::Endpoints::Matchers.boolean_equals?(true, Aws::Endpoints::Matchers.attr(partition_result, "supportsDualStack"))
|
|
42
|
+
return Aws::Endpoints::Endpoint.new(url: "https://omics.#{region}.#{partition_result['dualStackDnsSuffix']}", headers: {}, properties: {})
|
|
43
|
+
end
|
|
44
|
+
raise ArgumentError, "DualStack is enabled but this partition does not support DualStack"
|
|
42
45
|
end
|
|
43
|
-
|
|
46
|
+
return Aws::Endpoints::Endpoint.new(url: "https://omics.#{region}.#{partition_result['dnsSuffix']}", headers: {}, properties: {})
|
|
44
47
|
end
|
|
45
|
-
return Aws::Endpoints::Endpoint.new(url: "https://omics.#{region}.#{partition_result['dnsSuffix']}", headers: {}, properties: {})
|
|
46
48
|
end
|
|
49
|
+
raise ArgumentError, "Invalid Configuration: Missing Region"
|
|
47
50
|
raise ArgumentError, 'No endpoint could be resolved'
|
|
48
51
|
|
|
49
52
|
end
|
data/lib/aws-sdk-omics/types.rb
CHANGED
|
@@ -398,7 +398,8 @@ module Aws::Omics
|
|
|
398
398
|
# @return [String]
|
|
399
399
|
#
|
|
400
400
|
# @!attribute [rw] reference
|
|
401
|
-
# The store's genome reference.
|
|
401
|
+
# The store's genome reference. Required for all stores except TSV
|
|
402
|
+
# format with generic annotations.
|
|
402
403
|
# @return [Types::ReferenceItem]
|
|
403
404
|
#
|
|
404
405
|
# @!attribute [rw] status
|
|
@@ -502,7 +503,7 @@ module Aws::Omics
|
|
|
502
503
|
# @return [Integer]
|
|
503
504
|
#
|
|
504
505
|
# @!attribute [rw] max_duration
|
|
505
|
-
# A
|
|
506
|
+
# A maximum run time for the group in minutes.
|
|
506
507
|
# @return [Integer]
|
|
507
508
|
#
|
|
508
509
|
# @!attribute [rw] max_runs
|
|
@@ -514,7 +515,8 @@ module Aws::Omics
|
|
|
514
515
|
# @return [String]
|
|
515
516
|
#
|
|
516
517
|
# @!attribute [rw] request_id
|
|
517
|
-
#
|
|
518
|
+
# To ensure that requests don't run multiple times, specify a unique
|
|
519
|
+
# ID for each request.
|
|
518
520
|
#
|
|
519
521
|
# **A suitable default value is auto-generated.** You should normally
|
|
520
522
|
# not need to pass this option.
|
|
@@ -722,14 +724,15 @@ module Aws::Omics
|
|
|
722
724
|
# @return [Hash<String,Types::WorkflowParameter>]
|
|
723
725
|
#
|
|
724
726
|
# @!attribute [rw] request_id
|
|
725
|
-
#
|
|
727
|
+
# To ensure that requests don't run multiple times, specify a unique
|
|
728
|
+
# ID for each request.
|
|
726
729
|
#
|
|
727
730
|
# **A suitable default value is auto-generated.** You should normally
|
|
728
731
|
# not need to pass this option.
|
|
729
732
|
# @return [String]
|
|
730
733
|
#
|
|
731
734
|
# @!attribute [rw] storage_capacity
|
|
732
|
-
# A storage capacity for the workflow.
|
|
735
|
+
# A storage capacity for the workflow in gigabytes.
|
|
733
736
|
# @return [Integer]
|
|
734
737
|
#
|
|
735
738
|
# @!attribute [rw] tags
|
|
@@ -1278,7 +1281,7 @@ module Aws::Omics
|
|
|
1278
1281
|
# @return [String]
|
|
1279
1282
|
#
|
|
1280
1283
|
# @!attribute [rw] sources
|
|
1281
|
-
# The job's
|
|
1284
|
+
# The job's source files.
|
|
1282
1285
|
# @return [Array<Types::ActivateReadSetSourceItem>]
|
|
1283
1286
|
#
|
|
1284
1287
|
# @!attribute [rw] status
|
|
@@ -1405,7 +1408,7 @@ module Aws::Omics
|
|
|
1405
1408
|
# @return [String]
|
|
1406
1409
|
#
|
|
1407
1410
|
# @!attribute [rw] sources
|
|
1408
|
-
# The job's
|
|
1411
|
+
# The job's source files.
|
|
1409
1412
|
# @return [Array<Types::ImportReadSetSourceItem>]
|
|
1410
1413
|
#
|
|
1411
1414
|
# @!attribute [rw] status
|
|
@@ -1597,7 +1600,7 @@ module Aws::Omics
|
|
|
1597
1600
|
# @return [String]
|
|
1598
1601
|
#
|
|
1599
1602
|
# @!attribute [rw] sources
|
|
1600
|
-
# The job's
|
|
1603
|
+
# The job's source files.
|
|
1601
1604
|
# @return [Array<Types::ImportReferenceSourceItem>]
|
|
1602
1605
|
#
|
|
1603
1606
|
# @!attribute [rw] status
|
|
@@ -1819,7 +1822,7 @@ module Aws::Omics
|
|
|
1819
1822
|
# @return [Integer]
|
|
1820
1823
|
#
|
|
1821
1824
|
# @!attribute [rw] max_duration
|
|
1822
|
-
# The group's maximum run
|
|
1825
|
+
# The group's maximum run time in minutes.
|
|
1823
1826
|
# @return [Integer]
|
|
1824
1827
|
#
|
|
1825
1828
|
# @!attribute [rw] max_runs
|
|
@@ -1943,7 +1946,7 @@ module Aws::Omics
|
|
|
1943
1946
|
# @return [Time]
|
|
1944
1947
|
#
|
|
1945
1948
|
# @!attribute [rw] storage_capacity
|
|
1946
|
-
# The run's storage capacity.
|
|
1949
|
+
# The run's storage capacity in gigabytes.
|
|
1947
1950
|
# @return [Integer]
|
|
1948
1951
|
#
|
|
1949
1952
|
# @!attribute [rw] tags
|
|
@@ -2018,7 +2021,7 @@ module Aws::Omics
|
|
|
2018
2021
|
# @return [String]
|
|
2019
2022
|
#
|
|
2020
2023
|
# @!attribute [rw] memory
|
|
2021
|
-
# The task's memory
|
|
2024
|
+
# The task's memory use in gigabytes.
|
|
2022
2025
|
# @return [Integer]
|
|
2023
2026
|
#
|
|
2024
2027
|
# @!attribute [rw] name
|
|
@@ -2330,7 +2333,7 @@ module Aws::Omics
|
|
|
2330
2333
|
# @return [String]
|
|
2331
2334
|
#
|
|
2332
2335
|
# @!attribute [rw] storage_capacity
|
|
2333
|
-
# The workflow's storage capacity.
|
|
2336
|
+
# The workflow's storage capacity in gigabytes.
|
|
2334
2337
|
# @return [Integer]
|
|
2335
2338
|
#
|
|
2336
2339
|
# @!attribute [rw] tags
|
|
@@ -3853,7 +3856,7 @@ module Aws::Omics
|
|
|
3853
3856
|
# @return [Integer]
|
|
3854
3857
|
#
|
|
3855
3858
|
# @!attribute [rw] max_duration
|
|
3856
|
-
# The group's maximum duration setting.
|
|
3859
|
+
# The group's maximum duration setting in minutes.
|
|
3857
3860
|
# @return [Integer]
|
|
3858
3861
|
#
|
|
3859
3862
|
# @!attribute [rw] max_runs
|
|
@@ -4134,7 +4137,7 @@ module Aws::Omics
|
|
|
4134
4137
|
# @return [String]
|
|
4135
4138
|
#
|
|
4136
4139
|
# @!attribute [rw] sources
|
|
4137
|
-
# The job's
|
|
4140
|
+
# The job's source files.
|
|
4138
4141
|
# @return [Array<Types::StartReadSetActivationJobSourceItem>]
|
|
4139
4142
|
#
|
|
4140
4143
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetActivationJobRequest AWS API Documentation
|
|
@@ -4206,7 +4209,7 @@ module Aws::Omics
|
|
|
4206
4209
|
# @return [String]
|
|
4207
4210
|
#
|
|
4208
4211
|
# @!attribute [rw] sources
|
|
4209
|
-
#
|
|
4212
|
+
# The job's source files.
|
|
4210
4213
|
# @return [Array<Types::ExportReadSet>]
|
|
4211
4214
|
#
|
|
4212
4215
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetExportJobRequest AWS API Documentation
|
|
@@ -4267,7 +4270,7 @@ module Aws::Omics
|
|
|
4267
4270
|
# @return [String]
|
|
4268
4271
|
#
|
|
4269
4272
|
# @!attribute [rw] sources
|
|
4270
|
-
#
|
|
4273
|
+
# The job's source files.
|
|
4271
4274
|
# @return [Array<Types::StartReadSetImportJobSourceItem>]
|
|
4272
4275
|
#
|
|
4273
4276
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetImportJobRequest AWS API Documentation
|
|
@@ -4381,7 +4384,7 @@ module Aws::Omics
|
|
|
4381
4384
|
# @return [String]
|
|
4382
4385
|
#
|
|
4383
4386
|
# @!attribute [rw] sources
|
|
4384
|
-
#
|
|
4387
|
+
# The job's source files.
|
|
4385
4388
|
# @return [Array<Types::StartReferenceImportJobSourceItem>]
|
|
4386
4389
|
#
|
|
4387
4390
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReferenceImportJobRequest AWS API Documentation
|
|
@@ -4477,7 +4480,8 @@ module Aws::Omics
|
|
|
4477
4480
|
# @return [Integer]
|
|
4478
4481
|
#
|
|
4479
4482
|
# @!attribute [rw] request_id
|
|
4480
|
-
#
|
|
4483
|
+
# To ensure that requests don't run multiple times, specify a unique
|
|
4484
|
+
# ID for each request.
|
|
4481
4485
|
#
|
|
4482
4486
|
# **A suitable default value is auto-generated.** You should normally
|
|
4483
4487
|
# not need to pass this option.
|
|
@@ -4496,7 +4500,7 @@ module Aws::Omics
|
|
|
4496
4500
|
# @return [String]
|
|
4497
4501
|
#
|
|
4498
4502
|
# @!attribute [rw] storage_capacity
|
|
4499
|
-
# A storage capacity for the run.
|
|
4503
|
+
# A storage capacity for the run in gigabytes.
|
|
4500
4504
|
# @return [Integer]
|
|
4501
4505
|
#
|
|
4502
4506
|
# @!attribute [rw] tags
|
|
@@ -4652,7 +4656,7 @@ module Aws::Omics
|
|
|
4652
4656
|
# @return [Time]
|
|
4653
4657
|
#
|
|
4654
4658
|
# @!attribute [rw] memory
|
|
4655
|
-
# The task's memory.
|
|
4659
|
+
# The task's memory use in gigabyes.
|
|
4656
4660
|
# @return [Integer]
|
|
4657
4661
|
#
|
|
4658
4662
|
# @!attribute [rw] name
|
|
@@ -4840,7 +4844,7 @@ module Aws::Omics
|
|
|
4840
4844
|
# @return [Integer]
|
|
4841
4845
|
#
|
|
4842
4846
|
# @!attribute [rw] max_duration
|
|
4843
|
-
#
|
|
4847
|
+
# A maximum run time for the group in minutes.
|
|
4844
4848
|
# @return [Integer]
|
|
4845
4849
|
#
|
|
4846
4850
|
# @!attribute [rw] max_runs
|
|
@@ -4968,11 +4972,16 @@ module Aws::Omics
|
|
|
4968
4972
|
# The source file's location in Amazon S3.
|
|
4969
4973
|
# @return [String]
|
|
4970
4974
|
#
|
|
4975
|
+
# @!attribute [rw] status_message
|
|
4976
|
+
# A message that provides additional context about a job
|
|
4977
|
+
# @return [String]
|
|
4978
|
+
#
|
|
4971
4979
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/VariantImportItemDetail AWS API Documentation
|
|
4972
4980
|
#
|
|
4973
4981
|
class VariantImportItemDetail < Struct.new(
|
|
4974
4982
|
:job_status,
|
|
4975
|
-
:source
|
|
4983
|
+
:source,
|
|
4984
|
+
:status_message)
|
|
4976
4985
|
SENSITIVE = []
|
|
4977
4986
|
include Aws::Structure
|
|
4978
4987
|
end
|
data/lib/aws-sdk-omics.rb
CHANGED
metadata
CHANGED
|
@@ -1,14 +1,14 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: aws-sdk-omics
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 1.
|
|
4
|
+
version: 1.2.0
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Amazon Web Services
|
|
8
8
|
autorequire:
|
|
9
9
|
bindir: bin
|
|
10
10
|
cert_chain: []
|
|
11
|
-
date: 2023-
|
|
11
|
+
date: 2023-02-28 00:00:00.000000000 Z
|
|
12
12
|
dependencies:
|
|
13
13
|
- !ruby/object:Gem::Dependency
|
|
14
14
|
name: aws-sdk-core
|