aws-sdk-omics 1.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +7 -0
- data/CHANGELOG.md +8 -0
- data/LICENSE.txt +202 -0
- data/VERSION +1 -0
- data/lib/aws-sdk-omics/client.rb +3833 -0
- data/lib/aws-sdk-omics/client_api.rb +2932 -0
- data/lib/aws-sdk-omics/customizations.rb +0 -0
- data/lib/aws-sdk-omics/endpoint_parameters.rb +69 -0
- data/lib/aws-sdk-omics/endpoint_provider.rb +110 -0
- data/lib/aws-sdk-omics/endpoints.rb +939 -0
- data/lib/aws-sdk-omics/errors.rb +198 -0
- data/lib/aws-sdk-omics/plugins/endpoints.rb +200 -0
- data/lib/aws-sdk-omics/resource.rb +26 -0
- data/lib/aws-sdk-omics/types.rb +6190 -0
- data/lib/aws-sdk-omics/waiters.rb +1051 -0
- data/lib/aws-sdk-omics.rb +58 -0
- metadata +95 -0
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# frozen_string_literal: true
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# WARNING ABOUT GENERATED CODE
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#
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# This file is generated. See the contributing guide for more information:
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# https://github.com/aws/aws-sdk-ruby/blob/version-3/CONTRIBUTING.md
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#
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# WARNING ABOUT GENERATED CODE
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require 'seahorse/client/plugins/content_length.rb'
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require 'aws-sdk-core/plugins/credentials_configuration.rb'
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require 'aws-sdk-core/plugins/logging.rb'
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require 'aws-sdk-core/plugins/param_converter.rb'
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require 'aws-sdk-core/plugins/param_validator.rb'
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require 'aws-sdk-core/plugins/user_agent.rb'
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require 'aws-sdk-core/plugins/helpful_socket_errors.rb'
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require 'aws-sdk-core/plugins/retry_errors.rb'
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require 'aws-sdk-core/plugins/global_configuration.rb'
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require 'aws-sdk-core/plugins/regional_endpoint.rb'
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require 'aws-sdk-core/plugins/endpoint_discovery.rb'
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require 'aws-sdk-core/plugins/endpoint_pattern.rb'
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require 'aws-sdk-core/plugins/response_paging.rb'
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require 'aws-sdk-core/plugins/stub_responses.rb'
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require 'aws-sdk-core/plugins/idempotency_token.rb'
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require 'aws-sdk-core/plugins/jsonvalue_converter.rb'
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require 'aws-sdk-core/plugins/client_metrics_plugin.rb'
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require 'aws-sdk-core/plugins/client_metrics_send_plugin.rb'
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require 'aws-sdk-core/plugins/transfer_encoding.rb'
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require 'aws-sdk-core/plugins/http_checksum.rb'
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require 'aws-sdk-core/plugins/checksum_algorithm.rb'
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require 'aws-sdk-core/plugins/defaults_mode.rb'
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require 'aws-sdk-core/plugins/recursion_detection.rb'
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require 'aws-sdk-core/plugins/sign.rb'
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require 'aws-sdk-core/plugins/protocols/rest_json.rb'
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Aws::Plugins::GlobalConfiguration.add_identifier(:omics)
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module Aws::Omics
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# An API client for Omics. To construct a client, you need to configure a `:region` and `:credentials`.
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#
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# client = Aws::Omics::Client.new(
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# region: region_name,
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# credentials: credentials,
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# # ...
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# )
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#
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# For details on configuring region and credentials see
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# the [developer guide](/sdk-for-ruby/v3/developer-guide/setup-config.html).
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#
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# See {#initialize} for a full list of supported configuration options.
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class Client < Seahorse::Client::Base
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include Aws::ClientStubs
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@identifier = :omics
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set_api(ClientApi::API)
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add_plugin(Seahorse::Client::Plugins::ContentLength)
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add_plugin(Aws::Plugins::CredentialsConfiguration)
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add_plugin(Aws::Plugins::Logging)
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add_plugin(Aws::Plugins::ParamConverter)
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add_plugin(Aws::Plugins::ParamValidator)
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add_plugin(Aws::Plugins::UserAgent)
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add_plugin(Aws::Plugins::HelpfulSocketErrors)
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add_plugin(Aws::Plugins::RetryErrors)
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add_plugin(Aws::Plugins::GlobalConfiguration)
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add_plugin(Aws::Plugins::RegionalEndpoint)
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add_plugin(Aws::Plugins::EndpointDiscovery)
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add_plugin(Aws::Plugins::EndpointPattern)
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add_plugin(Aws::Plugins::ResponsePaging)
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add_plugin(Aws::Plugins::StubResponses)
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add_plugin(Aws::Plugins::IdempotencyToken)
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add_plugin(Aws::Plugins::JsonvalueConverter)
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add_plugin(Aws::Plugins::ClientMetricsPlugin)
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add_plugin(Aws::Plugins::ClientMetricsSendPlugin)
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add_plugin(Aws::Plugins::TransferEncoding)
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add_plugin(Aws::Plugins::HttpChecksum)
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add_plugin(Aws::Plugins::ChecksumAlgorithm)
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add_plugin(Aws::Plugins::DefaultsMode)
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add_plugin(Aws::Plugins::RecursionDetection)
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add_plugin(Aws::Plugins::Sign)
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add_plugin(Aws::Plugins::Protocols::RestJson)
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add_plugin(Aws::Omics::Plugins::Endpoints)
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# @overload initialize(options)
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# @param [Hash] options
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# @option options [required, Aws::CredentialProvider] :credentials
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# Your AWS credentials. This can be an instance of any one of the
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# following classes:
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#
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# * `Aws::Credentials` - Used for configuring static, non-refreshing
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# credentials.
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#
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# * `Aws::SharedCredentials` - Used for loading static credentials from a
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# shared file, such as `~/.aws/config`.
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#
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# * `Aws::AssumeRoleCredentials` - Used when you need to assume a role.
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#
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# * `Aws::AssumeRoleWebIdentityCredentials` - Used when you need to
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# assume a role after providing credentials via the web.
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#
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# * `Aws::SSOCredentials` - Used for loading credentials from AWS SSO using an
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# access token generated from `aws login`.
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#
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# * `Aws::ProcessCredentials` - Used for loading credentials from a
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# process that outputs to stdout.
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#
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# * `Aws::InstanceProfileCredentials` - Used for loading credentials
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# from an EC2 IMDS on an EC2 instance.
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#
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# * `Aws::ECSCredentials` - Used for loading credentials from
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# instances running in ECS.
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#
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# * `Aws::CognitoIdentityCredentials` - Used for loading credentials
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# from the Cognito Identity service.
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#
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# When `:credentials` are not configured directly, the following
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# locations will be searched for credentials:
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#
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# * `Aws.config[:credentials]`
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# * The `:access_key_id`, `:secret_access_key`, and `:session_token` options.
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# * ENV['AWS_ACCESS_KEY_ID'], ENV['AWS_SECRET_ACCESS_KEY']
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# * `~/.aws/credentials`
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# * `~/.aws/config`
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# * EC2/ECS IMDS instance profile - When used by default, the timeouts
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# are very aggressive. Construct and pass an instance of
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# `Aws::InstanceProfileCredentails` or `Aws::ECSCredentials` to
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# enable retries and extended timeouts. Instance profile credential
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# fetching can be disabled by setting ENV['AWS_EC2_METADATA_DISABLED']
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# to true.
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#
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# @option options [required, String] :region
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# The AWS region to connect to. The configured `:region` is
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# used to determine the service `:endpoint`. When not passed,
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# a default `:region` is searched for in the following locations:
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#
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# * `Aws.config[:region]`
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# * `ENV['AWS_REGION']`
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# * `ENV['AMAZON_REGION']`
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# * `ENV['AWS_DEFAULT_REGION']`
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# * `~/.aws/credentials`
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# * `~/.aws/config`
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#
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# @option options [String] :access_key_id
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#
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# @option options [Boolean] :active_endpoint_cache (false)
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# When set to `true`, a thread polling for endpoints will be running in
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# the background every 60 secs (default). Defaults to `false`.
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#
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# @option options [Boolean] :adaptive_retry_wait_to_fill (true)
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# Used only in `adaptive` retry mode. When true, the request will sleep
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# until there is sufficent client side capacity to retry the request.
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# When false, the request will raise a `RetryCapacityNotAvailableError` and will
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# not retry instead of sleeping.
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#
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# @option options [Boolean] :client_side_monitoring (false)
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# When `true`, client-side metrics will be collected for all API requests from
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# this client.
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#
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# @option options [String] :client_side_monitoring_client_id ("")
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# Allows you to provide an identifier for this client which will be attached to
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# all generated client side metrics. Defaults to an empty string.
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#
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# @option options [String] :client_side_monitoring_host ("127.0.0.1")
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# Allows you to specify the DNS hostname or IPv4 or IPv6 address that the client
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# side monitoring agent is running on, where client metrics will be published via UDP.
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#
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# @option options [Integer] :client_side_monitoring_port (31000)
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# Required for publishing client metrics. The port that the client side monitoring
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# agent is running on, where client metrics will be published via UDP.
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#
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# @option options [Aws::ClientSideMonitoring::Publisher] :client_side_monitoring_publisher (Aws::ClientSideMonitoring::Publisher)
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# Allows you to provide a custom client-side monitoring publisher class. By default,
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# will use the Client Side Monitoring Agent Publisher.
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#
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# @option options [Boolean] :convert_params (true)
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# When `true`, an attempt is made to coerce request parameters into
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# the required types.
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#
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# @option options [Boolean] :correct_clock_skew (true)
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# Used only in `standard` and adaptive retry modes. Specifies whether to apply
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# a clock skew correction and retry requests with skewed client clocks.
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#
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# @option options [String] :defaults_mode ("legacy")
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# See {Aws::DefaultsModeConfiguration} for a list of the
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# accepted modes and the configuration defaults that are included.
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#
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# @option options [Boolean] :disable_host_prefix_injection (false)
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# Set to true to disable SDK automatically adding host prefix
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# to default service endpoint when available.
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#
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# @option options [String] :endpoint
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# The client endpoint is normally constructed from the `:region`
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# option. You should only configure an `:endpoint` when connecting
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# to test or custom endpoints. This should be a valid HTTP(S) URI.
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#
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# @option options [Integer] :endpoint_cache_max_entries (1000)
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# Used for the maximum size limit of the LRU cache storing endpoints data
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# for endpoint discovery enabled operations. Defaults to 1000.
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#
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# @option options [Integer] :endpoint_cache_max_threads (10)
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# Used for the maximum threads in use for polling endpoints to be cached, defaults to 10.
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#
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# @option options [Integer] :endpoint_cache_poll_interval (60)
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# When :endpoint_discovery and :active_endpoint_cache is enabled,
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# Use this option to config the time interval in seconds for making
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# requests fetching endpoints information. Defaults to 60 sec.
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#
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# @option options [Boolean] :endpoint_discovery (false)
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# When set to `true`, endpoint discovery will be enabled for operations when available.
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#
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# @option options [Aws::Log::Formatter] :log_formatter (Aws::Log::Formatter.default)
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# The log formatter.
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#
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# @option options [Symbol] :log_level (:info)
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# The log level to send messages to the `:logger` at.
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#
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# @option options [Logger] :logger
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# The Logger instance to send log messages to. If this option
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# is not set, logging will be disabled.
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#
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# @option options [Integer] :max_attempts (3)
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# An integer representing the maximum number attempts that will be made for
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# a single request, including the initial attempt. For example,
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# setting this value to 5 will result in a request being retried up to
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# 4 times. Used in `standard` and `adaptive` retry modes.
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#
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# @option options [String] :profile ("default")
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# Used when loading credentials from the shared credentials file
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# at HOME/.aws/credentials. When not specified, 'default' is used.
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#
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# @option options [Proc] :retry_backoff
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# A proc or lambda used for backoff. Defaults to 2**retries * retry_base_delay.
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# This option is only used in the `legacy` retry mode.
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#
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# @option options [Float] :retry_base_delay (0.3)
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# The base delay in seconds used by the default backoff function. This option
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# is only used in the `legacy` retry mode.
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#
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# @option options [Symbol] :retry_jitter (:none)
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# A delay randomiser function used by the default backoff function.
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# Some predefined functions can be referenced by name - :none, :equal, :full,
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# otherwise a Proc that takes and returns a number. This option is only used
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# in the `legacy` retry mode.
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#
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# @see https://www.awsarchitectureblog.com/2015/03/backoff.html
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#
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# @option options [Integer] :retry_limit (3)
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# The maximum number of times to retry failed requests. Only
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# ~ 500 level server errors and certain ~ 400 level client errors
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# are retried. Generally, these are throttling errors, data
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# checksum errors, networking errors, timeout errors, auth errors,
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# endpoint discovery, and errors from expired credentials.
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# This option is only used in the `legacy` retry mode.
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#
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# @option options [Integer] :retry_max_delay (0)
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# The maximum number of seconds to delay between retries (0 for no limit)
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# used by the default backoff function. This option is only used in the
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# `legacy` retry mode.
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#
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# @option options [String] :retry_mode ("legacy")
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# Specifies which retry algorithm to use. Values are:
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#
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# * `legacy` - The pre-existing retry behavior. This is default value if
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# no retry mode is provided.
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#
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# * `standard` - A standardized set of retry rules across the AWS SDKs.
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# This includes support for retry quotas, which limit the number of
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# unsuccessful retries a client can make.
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#
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# * `adaptive` - An experimental retry mode that includes all the
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# functionality of `standard` mode along with automatic client side
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# throttling. This is a provisional mode that may change behavior
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# in the future.
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#
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#
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# @option options [String] :secret_access_key
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#
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# @option options [String] :session_token
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#
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# @option options [Boolean] :stub_responses (false)
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# Causes the client to return stubbed responses. By default
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# fake responses are generated and returned. You can specify
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# the response data to return or errors to raise by calling
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# {ClientStubs#stub_responses}. See {ClientStubs} for more information.
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#
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# ** Please note ** When response stubbing is enabled, no HTTP
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# requests are made, and retries are disabled.
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#
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# @option options [Aws::TokenProvider] :token_provider
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# A Bearer Token Provider. This can be an instance of any one of the
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# following classes:
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#
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# * `Aws::StaticTokenProvider` - Used for configuring static, non-refreshing
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# tokens.
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#
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# * `Aws::SSOTokenProvider` - Used for loading tokens from AWS SSO using an
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# access token generated from `aws login`.
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#
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# When `:token_provider` is not configured directly, the `Aws::TokenProviderChain`
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# will be used to search for tokens configured for your profile in shared configuration files.
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#
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# @option options [Boolean] :use_dualstack_endpoint
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# When set to `true`, dualstack enabled endpoints (with `.aws` TLD)
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# will be used if available.
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#
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# @option options [Boolean] :use_fips_endpoint
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# When set to `true`, fips compatible endpoints will be used if available.
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# When a `fips` region is used, the region is normalized and this config
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# is set to `true`.
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#
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# @option options [Boolean] :validate_params (true)
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# When `true`, request parameters are validated before
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# sending the request.
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#
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# @option options [Aws::Omics::EndpointProvider] :endpoint_provider
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# The endpoint provider used to resolve endpoints. Any object that responds to `#resolve_endpoint(parameters)` where `parameters` is a Struct similar to `Aws::Omics::EndpointParameters`
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#
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# @option options [URI::HTTP,String] :http_proxy A proxy to send
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# requests through. Formatted like 'http://proxy.com:123'.
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#
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# @option options [Float] :http_open_timeout (15) The number of
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# seconds to wait when opening a HTTP session before raising a
|
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# `Timeout::Error`.
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#
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# @option options [Float] :http_read_timeout (60) The default
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# number of seconds to wait for response data. This value can
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# safely be set per-request on the session.
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#
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# @option options [Float] :http_idle_timeout (5) The number of
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# seconds a connection is allowed to sit idle before it is
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# considered stale. Stale connections are closed and removed
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# from the pool before making a request.
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#
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# @option options [Float] :http_continue_timeout (1) The number of
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# seconds to wait for a 100-continue response before sending the
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# request body. This option has no effect unless the request has
|
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# "Expect" header set to "100-continue". Defaults to `nil` which
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# disables this behaviour. This value can safely be set per
|
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# request on the session.
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#
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# @option options [Float] :ssl_timeout (nil) Sets the SSL timeout
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# in seconds.
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+
#
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# @option options [Boolean] :http_wire_trace (false) When `true`,
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# HTTP debug output will be sent to the `:logger`.
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#
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# @option options [Boolean] :ssl_verify_peer (true) When `true`,
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# SSL peer certificates are verified when establishing a
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# connection.
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#
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# @option options [String] :ssl_ca_bundle Full path to the SSL
|
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+
# certificate authority bundle file that should be used when
|
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+
# verifying peer certificates. If you do not pass
|
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+
# `:ssl_ca_bundle` or `:ssl_ca_directory` the the system default
|
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# will be used if available.
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#
|
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# @option options [String] :ssl_ca_directory Full path of the
|
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+
# directory that contains the unbundled SSL certificate
|
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|
+
# authority files for verifying peer certificates. If you do
|
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|
+
# not pass `:ssl_ca_bundle` or `:ssl_ca_directory` the the
|
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+
# system default will be used if available.
|
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+
#
|
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+
def initialize(*args)
|
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+
super
|
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|
+
end
|
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|
+
|
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|
+
# @!group API Operations
|
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+
|
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# Deletes one or more read sets.
|
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|
+
#
|
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|
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# @option params [required, Array<String>] :ids
|
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|
+
# The read sets' IDs.
|
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|
+
#
|
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|
+
# @option params [required, String] :sequence_store_id
|
377
|
+
# The read sets' sequence store ID.
|
378
|
+
#
|
379
|
+
# @return [Types::BatchDeleteReadSetResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
380
|
+
#
|
381
|
+
# * {Types::BatchDeleteReadSetResponse#errors #errors} => Array<Types::ReadSetBatchError>
|
382
|
+
#
|
383
|
+
# @example Request syntax with placeholder values
|
384
|
+
#
|
385
|
+
# resp = client.batch_delete_read_set({
|
386
|
+
# ids: ["ReadSetId"], # required
|
387
|
+
# sequence_store_id: "SequenceStoreId", # required
|
388
|
+
# })
|
389
|
+
#
|
390
|
+
# @example Response structure
|
391
|
+
#
|
392
|
+
# resp.errors #=> Array
|
393
|
+
# resp.errors[0].code #=> String
|
394
|
+
# resp.errors[0].id #=> String
|
395
|
+
# resp.errors[0].message #=> String
|
396
|
+
#
|
397
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/BatchDeleteReadSet AWS API Documentation
|
398
|
+
#
|
399
|
+
# @overload batch_delete_read_set(params = {})
|
400
|
+
# @param [Hash] params ({})
|
401
|
+
def batch_delete_read_set(params = {}, options = {})
|
402
|
+
req = build_request(:batch_delete_read_set, params)
|
403
|
+
req.send_request(options)
|
404
|
+
end
|
405
|
+
|
406
|
+
# Cancels an annotation import job.
|
407
|
+
#
|
408
|
+
# @option params [required, String] :job_id
|
409
|
+
# The job's ID.
|
410
|
+
#
|
411
|
+
# @return [Struct] Returns an empty {Seahorse::Client::Response response}.
|
412
|
+
#
|
413
|
+
# @example Request syntax with placeholder values
|
414
|
+
#
|
415
|
+
# resp = client.cancel_annotation_import_job({
|
416
|
+
# job_id: "ResourceId", # required
|
417
|
+
# })
|
418
|
+
#
|
419
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CancelAnnotationImportJob AWS API Documentation
|
420
|
+
#
|
421
|
+
# @overload cancel_annotation_import_job(params = {})
|
422
|
+
# @param [Hash] params ({})
|
423
|
+
def cancel_annotation_import_job(params = {}, options = {})
|
424
|
+
req = build_request(:cancel_annotation_import_job, params)
|
425
|
+
req.send_request(options)
|
426
|
+
end
|
427
|
+
|
428
|
+
# Cancels a run.
|
429
|
+
#
|
430
|
+
# @option params [required, String] :id
|
431
|
+
# The run's ID.
|
432
|
+
#
|
433
|
+
# @return [Struct] Returns an empty {Seahorse::Client::Response response}.
|
434
|
+
#
|
435
|
+
# @example Request syntax with placeholder values
|
436
|
+
#
|
437
|
+
# resp = client.cancel_run({
|
438
|
+
# id: "RunId", # required
|
439
|
+
# })
|
440
|
+
#
|
441
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CancelRun AWS API Documentation
|
442
|
+
#
|
443
|
+
# @overload cancel_run(params = {})
|
444
|
+
# @param [Hash] params ({})
|
445
|
+
def cancel_run(params = {}, options = {})
|
446
|
+
req = build_request(:cancel_run, params)
|
447
|
+
req.send_request(options)
|
448
|
+
end
|
449
|
+
|
450
|
+
# Cancels a variant import job.
|
451
|
+
#
|
452
|
+
# @option params [required, String] :job_id
|
453
|
+
# The job's ID.
|
454
|
+
#
|
455
|
+
# @return [Struct] Returns an empty {Seahorse::Client::Response response}.
|
456
|
+
#
|
457
|
+
# @example Request syntax with placeholder values
|
458
|
+
#
|
459
|
+
# resp = client.cancel_variant_import_job({
|
460
|
+
# job_id: "ResourceId", # required
|
461
|
+
# })
|
462
|
+
#
|
463
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CancelVariantImportJob AWS API Documentation
|
464
|
+
#
|
465
|
+
# @overload cancel_variant_import_job(params = {})
|
466
|
+
# @param [Hash] params ({})
|
467
|
+
def cancel_variant_import_job(params = {}, options = {})
|
468
|
+
req = build_request(:cancel_variant_import_job, params)
|
469
|
+
req.send_request(options)
|
470
|
+
end
|
471
|
+
|
472
|
+
# Creates an annotation store.
|
473
|
+
#
|
474
|
+
# @option params [String] :description
|
475
|
+
# A description for the store.
|
476
|
+
#
|
477
|
+
# @option params [String] :name
|
478
|
+
# A name for the store.
|
479
|
+
#
|
480
|
+
# @option params [Types::ReferenceItem] :reference
|
481
|
+
# The genome reference for the store's annotations.
|
482
|
+
#
|
483
|
+
# @option params [Types::SseConfig] :sse_config
|
484
|
+
# Server-side encryption (SSE) settings for the store.
|
485
|
+
#
|
486
|
+
# @option params [required, String] :store_format
|
487
|
+
# The annotation file format of the store.
|
488
|
+
#
|
489
|
+
# @option params [Types::StoreOptions] :store_options
|
490
|
+
# File parsing options for the annotation store.
|
491
|
+
#
|
492
|
+
# @option params [Hash<String,String>] :tags
|
493
|
+
# Tags for the store.
|
494
|
+
#
|
495
|
+
# @return [Types::CreateAnnotationStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
496
|
+
#
|
497
|
+
# * {Types::CreateAnnotationStoreResponse#creation_time #creation_time} => Time
|
498
|
+
# * {Types::CreateAnnotationStoreResponse#id #id} => String
|
499
|
+
# * {Types::CreateAnnotationStoreResponse#name #name} => String
|
500
|
+
# * {Types::CreateAnnotationStoreResponse#reference #reference} => Types::ReferenceItem
|
501
|
+
# * {Types::CreateAnnotationStoreResponse#status #status} => String
|
502
|
+
# * {Types::CreateAnnotationStoreResponse#store_format #store_format} => String
|
503
|
+
# * {Types::CreateAnnotationStoreResponse#store_options #store_options} => Types::StoreOptions
|
504
|
+
#
|
505
|
+
# @example Request syntax with placeholder values
|
506
|
+
#
|
507
|
+
# resp = client.create_annotation_store({
|
508
|
+
# description: "StoreDescription",
|
509
|
+
# name: "CreateAnnotationStoreRequestNameString",
|
510
|
+
# reference: {
|
511
|
+
# reference_arn: "ReferenceArn",
|
512
|
+
# },
|
513
|
+
# sse_config: {
|
514
|
+
# key_arn: "SseConfigKeyArnString",
|
515
|
+
# type: "KMS", # required, accepts KMS
|
516
|
+
# },
|
517
|
+
# store_format: "GFF", # required, accepts GFF, TSV, VCF
|
518
|
+
# store_options: {
|
519
|
+
# tsv_store_options: {
|
520
|
+
# annotation_type: "GENERIC", # accepts GENERIC, CHR_POS, CHR_POS_REF_ALT, CHR_START_END_ONE_BASE, CHR_START_END_REF_ALT_ONE_BASE, CHR_START_END_ZERO_BASE, CHR_START_END_REF_ALT_ZERO_BASE
|
521
|
+
# format_to_header: {
|
522
|
+
# "CHR" => "FormatToHeaderValueString",
|
523
|
+
# },
|
524
|
+
# schema: [
|
525
|
+
# {
|
526
|
+
# "String" => "LONG", # accepts LONG, INT, STRING, FLOAT, DOUBLE, BOOLEAN
|
527
|
+
# },
|
528
|
+
# ],
|
529
|
+
# },
|
530
|
+
# },
|
531
|
+
# tags: {
|
532
|
+
# "TagKey" => "TagValue",
|
533
|
+
# },
|
534
|
+
# })
|
535
|
+
#
|
536
|
+
# @example Response structure
|
537
|
+
#
|
538
|
+
# resp.creation_time #=> Time
|
539
|
+
# resp.id #=> String
|
540
|
+
# resp.name #=> String
|
541
|
+
# resp.reference.reference_arn #=> String
|
542
|
+
# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
543
|
+
# resp.store_format #=> String, one of "GFF", "TSV", "VCF"
|
544
|
+
# resp.store_options.tsv_store_options.annotation_type #=> String, one of "GENERIC", "CHR_POS", "CHR_POS_REF_ALT", "CHR_START_END_ONE_BASE", "CHR_START_END_REF_ALT_ONE_BASE", "CHR_START_END_ZERO_BASE", "CHR_START_END_REF_ALT_ZERO_BASE"
|
545
|
+
# resp.store_options.tsv_store_options.format_to_header #=> Hash
|
546
|
+
# resp.store_options.tsv_store_options.format_to_header["FormatToHeaderKey"] #=> String
|
547
|
+
# resp.store_options.tsv_store_options.schema #=> Array
|
548
|
+
# resp.store_options.tsv_store_options.schema[0] #=> Hash
|
549
|
+
# resp.store_options.tsv_store_options.schema[0]["String"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN"
|
550
|
+
#
|
551
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateAnnotationStore AWS API Documentation
|
552
|
+
#
|
553
|
+
# @overload create_annotation_store(params = {})
|
554
|
+
# @param [Hash] params ({})
|
555
|
+
def create_annotation_store(params = {}, options = {})
|
556
|
+
req = build_request(:create_annotation_store, params)
|
557
|
+
req.send_request(options)
|
558
|
+
end
|
559
|
+
|
560
|
+
# Creates a reference store.
|
561
|
+
#
|
562
|
+
# @option params [String] :client_token
|
563
|
+
# To ensure that requests don't run multiple times, specify a unique
|
564
|
+
# token for each request.
|
565
|
+
#
|
566
|
+
# @option params [String] :description
|
567
|
+
# A description for the store.
|
568
|
+
#
|
569
|
+
# @option params [required, String] :name
|
570
|
+
# A name for the store.
|
571
|
+
#
|
572
|
+
# @option params [Types::SseConfig] :sse_config
|
573
|
+
# Server-side encryption (SSE) settings for the store.
|
574
|
+
#
|
575
|
+
# @option params [Hash<String,String>] :tags
|
576
|
+
# Tags for the store.
|
577
|
+
#
|
578
|
+
# @return [Types::CreateReferenceStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
579
|
+
#
|
580
|
+
# * {Types::CreateReferenceStoreResponse#arn #arn} => String
|
581
|
+
# * {Types::CreateReferenceStoreResponse#creation_time #creation_time} => Time
|
582
|
+
# * {Types::CreateReferenceStoreResponse#description #description} => String
|
583
|
+
# * {Types::CreateReferenceStoreResponse#id #id} => String
|
584
|
+
# * {Types::CreateReferenceStoreResponse#name #name} => String
|
585
|
+
# * {Types::CreateReferenceStoreResponse#sse_config #sse_config} => Types::SseConfig
|
586
|
+
#
|
587
|
+
# @example Request syntax with placeholder values
|
588
|
+
#
|
589
|
+
# resp = client.create_reference_store({
|
590
|
+
# client_token: "ClientToken",
|
591
|
+
# description: "ReferenceStoreDescription",
|
592
|
+
# name: "ReferenceStoreName", # required
|
593
|
+
# sse_config: {
|
594
|
+
# key_arn: "SseConfigKeyArnString",
|
595
|
+
# type: "KMS", # required, accepts KMS
|
596
|
+
# },
|
597
|
+
# tags: {
|
598
|
+
# "TagKey" => "TagValue",
|
599
|
+
# },
|
600
|
+
# })
|
601
|
+
#
|
602
|
+
# @example Response structure
|
603
|
+
#
|
604
|
+
# resp.arn #=> String
|
605
|
+
# resp.creation_time #=> Time
|
606
|
+
# resp.description #=> String
|
607
|
+
# resp.id #=> String
|
608
|
+
# resp.name #=> String
|
609
|
+
# resp.sse_config.key_arn #=> String
|
610
|
+
# resp.sse_config.type #=> String, one of "KMS"
|
611
|
+
#
|
612
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateReferenceStore AWS API Documentation
|
613
|
+
#
|
614
|
+
# @overload create_reference_store(params = {})
|
615
|
+
# @param [Hash] params ({})
|
616
|
+
def create_reference_store(params = {}, options = {})
|
617
|
+
req = build_request(:create_reference_store, params)
|
618
|
+
req.send_request(options)
|
619
|
+
end
|
620
|
+
|
621
|
+
# Creates a run group.
|
622
|
+
#
|
623
|
+
# @option params [Integer] :max_cpus
|
624
|
+
# The maximum number of CPUs to use in the group.
|
625
|
+
#
|
626
|
+
# @option params [Integer] :max_duration
|
627
|
+
# A max duration for the group.
|
628
|
+
#
|
629
|
+
# @option params [Integer] :max_runs
|
630
|
+
# The maximum number of concurrent runs for the group.
|
631
|
+
#
|
632
|
+
# @option params [String] :name
|
633
|
+
# A name for the group.
|
634
|
+
#
|
635
|
+
# @option params [required, String] :request_id
|
636
|
+
# A request ID for the group.
|
637
|
+
#
|
638
|
+
# **A suitable default value is auto-generated.** You should normally
|
639
|
+
# not need to pass this option.**
|
640
|
+
#
|
641
|
+
# @option params [Hash<String,String>] :tags
|
642
|
+
# Tags for the group.
|
643
|
+
#
|
644
|
+
# @return [Types::CreateRunGroupResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
645
|
+
#
|
646
|
+
# * {Types::CreateRunGroupResponse#arn #arn} => String
|
647
|
+
# * {Types::CreateRunGroupResponse#id #id} => String
|
648
|
+
# * {Types::CreateRunGroupResponse#tags #tags} => Hash<String,String>
|
649
|
+
#
|
650
|
+
# @example Request syntax with placeholder values
|
651
|
+
#
|
652
|
+
# resp = client.create_run_group({
|
653
|
+
# max_cpus: 1,
|
654
|
+
# max_duration: 1,
|
655
|
+
# max_runs: 1,
|
656
|
+
# name: "RunGroupName",
|
657
|
+
# request_id: "RunGroupRequestId", # required
|
658
|
+
# tags: {
|
659
|
+
# "TagKey" => "TagValue",
|
660
|
+
# },
|
661
|
+
# })
|
662
|
+
#
|
663
|
+
# @example Response structure
|
664
|
+
#
|
665
|
+
# resp.arn #=> String
|
666
|
+
# resp.id #=> String
|
667
|
+
# resp.tags #=> Hash
|
668
|
+
# resp.tags["TagKey"] #=> String
|
669
|
+
#
|
670
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateRunGroup AWS API Documentation
|
671
|
+
#
|
672
|
+
# @overload create_run_group(params = {})
|
673
|
+
# @param [Hash] params ({})
|
674
|
+
def create_run_group(params = {}, options = {})
|
675
|
+
req = build_request(:create_run_group, params)
|
676
|
+
req.send_request(options)
|
677
|
+
end
|
678
|
+
|
679
|
+
# Creates a sequence store.
|
680
|
+
#
|
681
|
+
# @option params [String] :client_token
|
682
|
+
# To ensure that requests don't run multiple times, specify a unique
|
683
|
+
# token for each request.
|
684
|
+
#
|
685
|
+
# @option params [String] :description
|
686
|
+
# A description for the store.
|
687
|
+
#
|
688
|
+
# @option params [required, String] :name
|
689
|
+
# A name for the store.
|
690
|
+
#
|
691
|
+
# @option params [Types::SseConfig] :sse_config
|
692
|
+
# Server-side encryption (SSE) settings for the store.
|
693
|
+
#
|
694
|
+
# @option params [Hash<String,String>] :tags
|
695
|
+
# Tags for the store.
|
696
|
+
#
|
697
|
+
# @return [Types::CreateSequenceStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
698
|
+
#
|
699
|
+
# * {Types::CreateSequenceStoreResponse#arn #arn} => String
|
700
|
+
# * {Types::CreateSequenceStoreResponse#creation_time #creation_time} => Time
|
701
|
+
# * {Types::CreateSequenceStoreResponse#description #description} => String
|
702
|
+
# * {Types::CreateSequenceStoreResponse#id #id} => String
|
703
|
+
# * {Types::CreateSequenceStoreResponse#name #name} => String
|
704
|
+
# * {Types::CreateSequenceStoreResponse#sse_config #sse_config} => Types::SseConfig
|
705
|
+
#
|
706
|
+
# @example Request syntax with placeholder values
|
707
|
+
#
|
708
|
+
# resp = client.create_sequence_store({
|
709
|
+
# client_token: "ClientToken",
|
710
|
+
# description: "SequenceStoreDescription",
|
711
|
+
# name: "SequenceStoreName", # required
|
712
|
+
# sse_config: {
|
713
|
+
# key_arn: "SseConfigKeyArnString",
|
714
|
+
# type: "KMS", # required, accepts KMS
|
715
|
+
# },
|
716
|
+
# tags: {
|
717
|
+
# "TagKey" => "TagValue",
|
718
|
+
# },
|
719
|
+
# })
|
720
|
+
#
|
721
|
+
# @example Response structure
|
722
|
+
#
|
723
|
+
# resp.arn #=> String
|
724
|
+
# resp.creation_time #=> Time
|
725
|
+
# resp.description #=> String
|
726
|
+
# resp.id #=> String
|
727
|
+
# resp.name #=> String
|
728
|
+
# resp.sse_config.key_arn #=> String
|
729
|
+
# resp.sse_config.type #=> String, one of "KMS"
|
730
|
+
#
|
731
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateSequenceStore AWS API Documentation
|
732
|
+
#
|
733
|
+
# @overload create_sequence_store(params = {})
|
734
|
+
# @param [Hash] params ({})
|
735
|
+
def create_sequence_store(params = {}, options = {})
|
736
|
+
req = build_request(:create_sequence_store, params)
|
737
|
+
req.send_request(options)
|
738
|
+
end
|
739
|
+
|
740
|
+
# Creates a variant store.
|
741
|
+
#
|
742
|
+
# @option params [String] :description
|
743
|
+
# A description for the store.
|
744
|
+
#
|
745
|
+
# @option params [String] :name
|
746
|
+
# A name for the store.
|
747
|
+
#
|
748
|
+
# @option params [required, Types::ReferenceItem] :reference
|
749
|
+
# The genome reference for the store's variants.
|
750
|
+
#
|
751
|
+
# @option params [Types::SseConfig] :sse_config
|
752
|
+
# Server-side encryption (SSE) settings for the store.
|
753
|
+
#
|
754
|
+
# @option params [Hash<String,String>] :tags
|
755
|
+
# Tags for the store.
|
756
|
+
#
|
757
|
+
# @return [Types::CreateVariantStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
758
|
+
#
|
759
|
+
# * {Types::CreateVariantStoreResponse#creation_time #creation_time} => Time
|
760
|
+
# * {Types::CreateVariantStoreResponse#id #id} => String
|
761
|
+
# * {Types::CreateVariantStoreResponse#name #name} => String
|
762
|
+
# * {Types::CreateVariantStoreResponse#reference #reference} => Types::ReferenceItem
|
763
|
+
# * {Types::CreateVariantStoreResponse#status #status} => String
|
764
|
+
#
|
765
|
+
# @example Request syntax with placeholder values
|
766
|
+
#
|
767
|
+
# resp = client.create_variant_store({
|
768
|
+
# description: "StoreDescription",
|
769
|
+
# name: "CreateVariantStoreRequestNameString",
|
770
|
+
# reference: { # required
|
771
|
+
# reference_arn: "ReferenceArn",
|
772
|
+
# },
|
773
|
+
# sse_config: {
|
774
|
+
# key_arn: "SseConfigKeyArnString",
|
775
|
+
# type: "KMS", # required, accepts KMS
|
776
|
+
# },
|
777
|
+
# tags: {
|
778
|
+
# "TagKey" => "TagValue",
|
779
|
+
# },
|
780
|
+
# })
|
781
|
+
#
|
782
|
+
# @example Response structure
|
783
|
+
#
|
784
|
+
# resp.creation_time #=> Time
|
785
|
+
# resp.id #=> String
|
786
|
+
# resp.name #=> String
|
787
|
+
# resp.reference.reference_arn #=> String
|
788
|
+
# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
789
|
+
#
|
790
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateVariantStore AWS API Documentation
|
791
|
+
#
|
792
|
+
# @overload create_variant_store(params = {})
|
793
|
+
# @param [Hash] params ({})
|
794
|
+
def create_variant_store(params = {}, options = {})
|
795
|
+
req = build_request(:create_variant_store, params)
|
796
|
+
req.send_request(options)
|
797
|
+
end
|
798
|
+
|
799
|
+
# Creates a workflow.
|
800
|
+
#
|
801
|
+
# @option params [String] :definition_uri
|
802
|
+
# The URI of a definition for the workflow.
|
803
|
+
#
|
804
|
+
# @option params [String, StringIO, File] :definition_zip
|
805
|
+
# A ZIP archive for the workflow.
|
806
|
+
#
|
807
|
+
# @option params [String] :description
|
808
|
+
# A description for the workflow.
|
809
|
+
#
|
810
|
+
# @option params [String] :engine
|
811
|
+
# An engine for the workflow.
|
812
|
+
#
|
813
|
+
# @option params [String] :main
|
814
|
+
# The path of the main definition file for the workflow.
|
815
|
+
#
|
816
|
+
# @option params [String] :name
|
817
|
+
# A name for the workflow.
|
818
|
+
#
|
819
|
+
# @option params [Hash<String,Types::WorkflowParameter>] :parameter_template
|
820
|
+
# A parameter template for the workflow.
|
821
|
+
#
|
822
|
+
# @option params [required, String] :request_id
|
823
|
+
# A request ID for the workflow.
|
824
|
+
#
|
825
|
+
# **A suitable default value is auto-generated.** You should normally
|
826
|
+
# not need to pass this option.**
|
827
|
+
#
|
828
|
+
# @option params [Integer] :storage_capacity
|
829
|
+
# A storage capacity for the workflow.
|
830
|
+
#
|
831
|
+
# @option params [Hash<String,String>] :tags
|
832
|
+
# Tags for the workflow.
|
833
|
+
#
|
834
|
+
# @return [Types::CreateWorkflowResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
835
|
+
#
|
836
|
+
# * {Types::CreateWorkflowResponse#arn #arn} => String
|
837
|
+
# * {Types::CreateWorkflowResponse#id #id} => String
|
838
|
+
# * {Types::CreateWorkflowResponse#status #status} => String
|
839
|
+
# * {Types::CreateWorkflowResponse#tags #tags} => Hash<String,String>
|
840
|
+
#
|
841
|
+
# @example Request syntax with placeholder values
|
842
|
+
#
|
843
|
+
# resp = client.create_workflow({
|
844
|
+
# definition_uri: "WorkflowDefinition",
|
845
|
+
# definition_zip: "data",
|
846
|
+
# description: "WorkflowDescription",
|
847
|
+
# engine: "WDL", # accepts WDL, NEXTFLOW
|
848
|
+
# main: "WorkflowMain",
|
849
|
+
# name: "WorkflowName",
|
850
|
+
# parameter_template: {
|
851
|
+
# "WorkflowParameterName" => {
|
852
|
+
# description: "WorkflowParameterDescription",
|
853
|
+
# optional: false,
|
854
|
+
# },
|
855
|
+
# },
|
856
|
+
# request_id: "WorkflowRequestId", # required
|
857
|
+
# storage_capacity: 1,
|
858
|
+
# tags: {
|
859
|
+
# "TagKey" => "TagValue",
|
860
|
+
# },
|
861
|
+
# })
|
862
|
+
#
|
863
|
+
# @example Response structure
|
864
|
+
#
|
865
|
+
# resp.arn #=> String
|
866
|
+
# resp.id #=> String
|
867
|
+
# resp.status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED"
|
868
|
+
# resp.tags #=> Hash
|
869
|
+
# resp.tags["TagKey"] #=> String
|
870
|
+
#
|
871
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateWorkflow AWS API Documentation
|
872
|
+
#
|
873
|
+
# @overload create_workflow(params = {})
|
874
|
+
# @param [Hash] params ({})
|
875
|
+
def create_workflow(params = {}, options = {})
|
876
|
+
req = build_request(:create_workflow, params)
|
877
|
+
req.send_request(options)
|
878
|
+
end
|
879
|
+
|
880
|
+
# Deletes an annotation store.
|
881
|
+
#
|
882
|
+
# @option params [Boolean] :force
|
883
|
+
# Whether to force deletion.
|
884
|
+
#
|
885
|
+
# @option params [required, String] :name
|
886
|
+
# The store's name.
|
887
|
+
#
|
888
|
+
# @return [Types::DeleteAnnotationStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
889
|
+
#
|
890
|
+
# * {Types::DeleteAnnotationStoreResponse#status #status} => String
|
891
|
+
#
|
892
|
+
# @example Request syntax with placeholder values
|
893
|
+
#
|
894
|
+
# resp = client.delete_annotation_store({
|
895
|
+
# force: false,
|
896
|
+
# name: "String", # required
|
897
|
+
# })
|
898
|
+
#
|
899
|
+
# @example Response structure
|
900
|
+
#
|
901
|
+
# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
902
|
+
#
|
903
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteAnnotationStore AWS API Documentation
|
904
|
+
#
|
905
|
+
# @overload delete_annotation_store(params = {})
|
906
|
+
# @param [Hash] params ({})
|
907
|
+
def delete_annotation_store(params = {}, options = {})
|
908
|
+
req = build_request(:delete_annotation_store, params)
|
909
|
+
req.send_request(options)
|
910
|
+
end
|
911
|
+
|
912
|
+
# Deletes a genome reference.
|
913
|
+
#
|
914
|
+
# @option params [required, String] :id
|
915
|
+
# The reference's ID.
|
916
|
+
#
|
917
|
+
# @option params [required, String] :reference_store_id
|
918
|
+
# The reference's store ID.
|
919
|
+
#
|
920
|
+
# @return [Struct] Returns an empty {Seahorse::Client::Response response}.
|
921
|
+
#
|
922
|
+
# @example Request syntax with placeholder values
|
923
|
+
#
|
924
|
+
# resp = client.delete_reference({
|
925
|
+
# id: "ReferenceId", # required
|
926
|
+
# reference_store_id: "ReferenceStoreId", # required
|
927
|
+
# })
|
928
|
+
#
|
929
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteReference AWS API Documentation
|
930
|
+
#
|
931
|
+
# @overload delete_reference(params = {})
|
932
|
+
# @param [Hash] params ({})
|
933
|
+
def delete_reference(params = {}, options = {})
|
934
|
+
req = build_request(:delete_reference, params)
|
935
|
+
req.send_request(options)
|
936
|
+
end
|
937
|
+
|
938
|
+
# Deletes a genome reference store.
|
939
|
+
#
|
940
|
+
# @option params [required, String] :id
|
941
|
+
# The store's ID.
|
942
|
+
#
|
943
|
+
# @return [Struct] Returns an empty {Seahorse::Client::Response response}.
|
944
|
+
#
|
945
|
+
# @example Request syntax with placeholder values
|
946
|
+
#
|
947
|
+
# resp = client.delete_reference_store({
|
948
|
+
# id: "ReferenceStoreId", # required
|
949
|
+
# })
|
950
|
+
#
|
951
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteReferenceStore AWS API Documentation
|
952
|
+
#
|
953
|
+
# @overload delete_reference_store(params = {})
|
954
|
+
# @param [Hash] params ({})
|
955
|
+
def delete_reference_store(params = {}, options = {})
|
956
|
+
req = build_request(:delete_reference_store, params)
|
957
|
+
req.send_request(options)
|
958
|
+
end
|
959
|
+
|
960
|
+
# Deletes a workflow run.
|
961
|
+
#
|
962
|
+
# @option params [required, String] :id
|
963
|
+
# The run's ID.
|
964
|
+
#
|
965
|
+
# @return [Struct] Returns an empty {Seahorse::Client::Response response}.
|
966
|
+
#
|
967
|
+
# @example Request syntax with placeholder values
|
968
|
+
#
|
969
|
+
# resp = client.delete_run({
|
970
|
+
# id: "RunId", # required
|
971
|
+
# })
|
972
|
+
#
|
973
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteRun AWS API Documentation
|
974
|
+
#
|
975
|
+
# @overload delete_run(params = {})
|
976
|
+
# @param [Hash] params ({})
|
977
|
+
def delete_run(params = {}, options = {})
|
978
|
+
req = build_request(:delete_run, params)
|
979
|
+
req.send_request(options)
|
980
|
+
end
|
981
|
+
|
982
|
+
# Deletes a workflow run group.
|
983
|
+
#
|
984
|
+
# @option params [required, String] :id
|
985
|
+
# The run group's ID.
|
986
|
+
#
|
987
|
+
# @return [Struct] Returns an empty {Seahorse::Client::Response response}.
|
988
|
+
#
|
989
|
+
# @example Request syntax with placeholder values
|
990
|
+
#
|
991
|
+
# resp = client.delete_run_group({
|
992
|
+
# id: "RunGroupId", # required
|
993
|
+
# })
|
994
|
+
#
|
995
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteRunGroup AWS API Documentation
|
996
|
+
#
|
997
|
+
# @overload delete_run_group(params = {})
|
998
|
+
# @param [Hash] params ({})
|
999
|
+
def delete_run_group(params = {}, options = {})
|
1000
|
+
req = build_request(:delete_run_group, params)
|
1001
|
+
req.send_request(options)
|
1002
|
+
end
|
1003
|
+
|
1004
|
+
# Deletes a sequence store.
|
1005
|
+
#
|
1006
|
+
# @option params [required, String] :id
|
1007
|
+
# The sequence store's ID.
|
1008
|
+
#
|
1009
|
+
# @return [Struct] Returns an empty {Seahorse::Client::Response response}.
|
1010
|
+
#
|
1011
|
+
# @example Request syntax with placeholder values
|
1012
|
+
#
|
1013
|
+
# resp = client.delete_sequence_store({
|
1014
|
+
# id: "SequenceStoreId", # required
|
1015
|
+
# })
|
1016
|
+
#
|
1017
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteSequenceStore AWS API Documentation
|
1018
|
+
#
|
1019
|
+
# @overload delete_sequence_store(params = {})
|
1020
|
+
# @param [Hash] params ({})
|
1021
|
+
def delete_sequence_store(params = {}, options = {})
|
1022
|
+
req = build_request(:delete_sequence_store, params)
|
1023
|
+
req.send_request(options)
|
1024
|
+
end
|
1025
|
+
|
1026
|
+
# Deletes a variant store.
|
1027
|
+
#
|
1028
|
+
# @option params [Boolean] :force
|
1029
|
+
# Whether to force deletion.
|
1030
|
+
#
|
1031
|
+
# @option params [required, String] :name
|
1032
|
+
# The store's name.
|
1033
|
+
#
|
1034
|
+
# @return [Types::DeleteVariantStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1035
|
+
#
|
1036
|
+
# * {Types::DeleteVariantStoreResponse#status #status} => String
|
1037
|
+
#
|
1038
|
+
# @example Request syntax with placeholder values
|
1039
|
+
#
|
1040
|
+
# resp = client.delete_variant_store({
|
1041
|
+
# force: false,
|
1042
|
+
# name: "String", # required
|
1043
|
+
# })
|
1044
|
+
#
|
1045
|
+
# @example Response structure
|
1046
|
+
#
|
1047
|
+
# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
1048
|
+
#
|
1049
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteVariantStore AWS API Documentation
|
1050
|
+
#
|
1051
|
+
# @overload delete_variant_store(params = {})
|
1052
|
+
# @param [Hash] params ({})
|
1053
|
+
def delete_variant_store(params = {}, options = {})
|
1054
|
+
req = build_request(:delete_variant_store, params)
|
1055
|
+
req.send_request(options)
|
1056
|
+
end
|
1057
|
+
|
1058
|
+
# Deletes a workflow.
|
1059
|
+
#
|
1060
|
+
# @option params [required, String] :id
|
1061
|
+
# The workflow's ID.
|
1062
|
+
#
|
1063
|
+
# @return [Struct] Returns an empty {Seahorse::Client::Response response}.
|
1064
|
+
#
|
1065
|
+
# @example Request syntax with placeholder values
|
1066
|
+
#
|
1067
|
+
# resp = client.delete_workflow({
|
1068
|
+
# id: "WorkflowId", # required
|
1069
|
+
# })
|
1070
|
+
#
|
1071
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteWorkflow AWS API Documentation
|
1072
|
+
#
|
1073
|
+
# @overload delete_workflow(params = {})
|
1074
|
+
# @param [Hash] params ({})
|
1075
|
+
def delete_workflow(params = {}, options = {})
|
1076
|
+
req = build_request(:delete_workflow, params)
|
1077
|
+
req.send_request(options)
|
1078
|
+
end
|
1079
|
+
|
1080
|
+
# Gets information about an annotation import job.
|
1081
|
+
#
|
1082
|
+
# @option params [required, String] :job_id
|
1083
|
+
# The job's ID.
|
1084
|
+
#
|
1085
|
+
# @return [Types::GetAnnotationImportResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1086
|
+
#
|
1087
|
+
# * {Types::GetAnnotationImportResponse#completion_time #completion_time} => Time
|
1088
|
+
# * {Types::GetAnnotationImportResponse#creation_time #creation_time} => Time
|
1089
|
+
# * {Types::GetAnnotationImportResponse#destination_name #destination_name} => String
|
1090
|
+
# * {Types::GetAnnotationImportResponse#format_options #format_options} => Types::FormatOptions
|
1091
|
+
# * {Types::GetAnnotationImportResponse#id #id} => String
|
1092
|
+
# * {Types::GetAnnotationImportResponse#items #items} => Array<Types::AnnotationImportItemDetail>
|
1093
|
+
# * {Types::GetAnnotationImportResponse#role_arn #role_arn} => String
|
1094
|
+
# * {Types::GetAnnotationImportResponse#run_left_normalization #run_left_normalization} => Boolean
|
1095
|
+
# * {Types::GetAnnotationImportResponse#status #status} => String
|
1096
|
+
# * {Types::GetAnnotationImportResponse#status_message #status_message} => String
|
1097
|
+
# * {Types::GetAnnotationImportResponse#update_time #update_time} => Time
|
1098
|
+
#
|
1099
|
+
# @example Request syntax with placeholder values
|
1100
|
+
#
|
1101
|
+
# resp = client.get_annotation_import_job({
|
1102
|
+
# job_id: "ResourceId", # required
|
1103
|
+
# })
|
1104
|
+
#
|
1105
|
+
# @example Response structure
|
1106
|
+
#
|
1107
|
+
# resp.completion_time #=> Time
|
1108
|
+
# resp.creation_time #=> Time
|
1109
|
+
# resp.destination_name #=> String
|
1110
|
+
# resp.format_options.tsv_options.read_options.comment #=> String
|
1111
|
+
# resp.format_options.tsv_options.read_options.encoding #=> String
|
1112
|
+
# resp.format_options.tsv_options.read_options.escape #=> String
|
1113
|
+
# resp.format_options.tsv_options.read_options.escape_quotes #=> Boolean
|
1114
|
+
# resp.format_options.tsv_options.read_options.header #=> Boolean
|
1115
|
+
# resp.format_options.tsv_options.read_options.line_sep #=> String
|
1116
|
+
# resp.format_options.tsv_options.read_options.quote #=> String
|
1117
|
+
# resp.format_options.tsv_options.read_options.quote_all #=> Boolean
|
1118
|
+
# resp.format_options.tsv_options.read_options.sep #=> String
|
1119
|
+
# resp.format_options.vcf_options.ignore_filter_field #=> Boolean
|
1120
|
+
# resp.format_options.vcf_options.ignore_qual_field #=> Boolean
|
1121
|
+
# resp.id #=> String
|
1122
|
+
# resp.items #=> Array
|
1123
|
+
# resp.items[0].job_status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED"
|
1124
|
+
# resp.items[0].source #=> String
|
1125
|
+
# resp.role_arn #=> String
|
1126
|
+
# resp.run_left_normalization #=> Boolean
|
1127
|
+
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED"
|
1128
|
+
# resp.status_message #=> String
|
1129
|
+
# resp.update_time #=> Time
|
1130
|
+
#
|
1131
|
+
#
|
1132
|
+
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
1133
|
+
#
|
1134
|
+
# * annotation_import_job_created
|
1135
|
+
#
|
1136
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetAnnotationImportJob AWS API Documentation
|
1137
|
+
#
|
1138
|
+
# @overload get_annotation_import_job(params = {})
|
1139
|
+
# @param [Hash] params ({})
|
1140
|
+
def get_annotation_import_job(params = {}, options = {})
|
1141
|
+
req = build_request(:get_annotation_import_job, params)
|
1142
|
+
req.send_request(options)
|
1143
|
+
end
|
1144
|
+
|
1145
|
+
# Gets information about an annotation store.
|
1146
|
+
#
|
1147
|
+
# @option params [required, String] :name
|
1148
|
+
# The store's name.
|
1149
|
+
#
|
1150
|
+
# @return [Types::GetAnnotationStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1151
|
+
#
|
1152
|
+
# * {Types::GetAnnotationStoreResponse#creation_time #creation_time} => Time
|
1153
|
+
# * {Types::GetAnnotationStoreResponse#description #description} => String
|
1154
|
+
# * {Types::GetAnnotationStoreResponse#id #id} => String
|
1155
|
+
# * {Types::GetAnnotationStoreResponse#name #name} => String
|
1156
|
+
# * {Types::GetAnnotationStoreResponse#reference #reference} => Types::ReferenceItem
|
1157
|
+
# * {Types::GetAnnotationStoreResponse#sse_config #sse_config} => Types::SseConfig
|
1158
|
+
# * {Types::GetAnnotationStoreResponse#status #status} => String
|
1159
|
+
# * {Types::GetAnnotationStoreResponse#status_message #status_message} => String
|
1160
|
+
# * {Types::GetAnnotationStoreResponse#store_arn #store_arn} => String
|
1161
|
+
# * {Types::GetAnnotationStoreResponse#store_format #store_format} => String
|
1162
|
+
# * {Types::GetAnnotationStoreResponse#store_options #store_options} => Types::StoreOptions
|
1163
|
+
# * {Types::GetAnnotationStoreResponse#store_size_bytes #store_size_bytes} => Integer
|
1164
|
+
# * {Types::GetAnnotationStoreResponse#tags #tags} => Hash<String,String>
|
1165
|
+
# * {Types::GetAnnotationStoreResponse#update_time #update_time} => Time
|
1166
|
+
#
|
1167
|
+
# @example Request syntax with placeholder values
|
1168
|
+
#
|
1169
|
+
# resp = client.get_annotation_store({
|
1170
|
+
# name: "String", # required
|
1171
|
+
# })
|
1172
|
+
#
|
1173
|
+
# @example Response structure
|
1174
|
+
#
|
1175
|
+
# resp.creation_time #=> Time
|
1176
|
+
# resp.description #=> String
|
1177
|
+
# resp.id #=> String
|
1178
|
+
# resp.name #=> String
|
1179
|
+
# resp.reference.reference_arn #=> String
|
1180
|
+
# resp.sse_config.key_arn #=> String
|
1181
|
+
# resp.sse_config.type #=> String, one of "KMS"
|
1182
|
+
# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
1183
|
+
# resp.status_message #=> String
|
1184
|
+
# resp.store_arn #=> String
|
1185
|
+
# resp.store_format #=> String, one of "GFF", "TSV", "VCF"
|
1186
|
+
# resp.store_options.tsv_store_options.annotation_type #=> String, one of "GENERIC", "CHR_POS", "CHR_POS_REF_ALT", "CHR_START_END_ONE_BASE", "CHR_START_END_REF_ALT_ONE_BASE", "CHR_START_END_ZERO_BASE", "CHR_START_END_REF_ALT_ZERO_BASE"
|
1187
|
+
# resp.store_options.tsv_store_options.format_to_header #=> Hash
|
1188
|
+
# resp.store_options.tsv_store_options.format_to_header["FormatToHeaderKey"] #=> String
|
1189
|
+
# resp.store_options.tsv_store_options.schema #=> Array
|
1190
|
+
# resp.store_options.tsv_store_options.schema[0] #=> Hash
|
1191
|
+
# resp.store_options.tsv_store_options.schema[0]["String"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN"
|
1192
|
+
# resp.store_size_bytes #=> Integer
|
1193
|
+
# resp.tags #=> Hash
|
1194
|
+
# resp.tags["TagKey"] #=> String
|
1195
|
+
# resp.update_time #=> Time
|
1196
|
+
#
|
1197
|
+
#
|
1198
|
+
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
1199
|
+
#
|
1200
|
+
# * annotation_store_created
|
1201
|
+
# * annotation_store_deleted
|
1202
|
+
#
|
1203
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetAnnotationStore AWS API Documentation
|
1204
|
+
#
|
1205
|
+
# @overload get_annotation_store(params = {})
|
1206
|
+
# @param [Hash] params ({})
|
1207
|
+
def get_annotation_store(params = {}, options = {})
|
1208
|
+
req = build_request(:get_annotation_store, params)
|
1209
|
+
req.send_request(options)
|
1210
|
+
end
|
1211
|
+
|
1212
|
+
# Gets a file from a read set.
|
1213
|
+
#
|
1214
|
+
# @option params [String] :file
|
1215
|
+
# The file to retrieve.
|
1216
|
+
#
|
1217
|
+
# @option params [required, String] :id
|
1218
|
+
# The read set's ID.
|
1219
|
+
#
|
1220
|
+
# @option params [required, Integer] :part_number
|
1221
|
+
# The part number to retrieve.
|
1222
|
+
#
|
1223
|
+
# @option params [required, String] :sequence_store_id
|
1224
|
+
# The read set's sequence store ID.
|
1225
|
+
#
|
1226
|
+
# @return [Types::GetReadSetResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1227
|
+
#
|
1228
|
+
# * {Types::GetReadSetResponse#payload #payload} => IO
|
1229
|
+
#
|
1230
|
+
# @example Request syntax with placeholder values
|
1231
|
+
#
|
1232
|
+
# resp = client.get_read_set({
|
1233
|
+
# file: "SOURCE1", # accepts SOURCE1, SOURCE2, INDEX
|
1234
|
+
# id: "ReadSetId", # required
|
1235
|
+
# part_number: 1, # required
|
1236
|
+
# sequence_store_id: "SequenceStoreId", # required
|
1237
|
+
# })
|
1238
|
+
#
|
1239
|
+
# @example Response structure
|
1240
|
+
#
|
1241
|
+
# resp.payload #=> IO
|
1242
|
+
#
|
1243
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReadSet AWS API Documentation
|
1244
|
+
#
|
1245
|
+
# @overload get_read_set(params = {})
|
1246
|
+
# @param [Hash] params ({})
|
1247
|
+
def get_read_set(params = {}, options = {}, &block)
|
1248
|
+
req = build_request(:get_read_set, params)
|
1249
|
+
req.send_request(options, &block)
|
1250
|
+
end
|
1251
|
+
|
1252
|
+
# Gets information about a read set activation job.
|
1253
|
+
#
|
1254
|
+
# @option params [required, String] :id
|
1255
|
+
# The job's ID.
|
1256
|
+
#
|
1257
|
+
# @option params [required, String] :sequence_store_id
|
1258
|
+
# The job's sequence store ID.
|
1259
|
+
#
|
1260
|
+
# @return [Types::GetReadSetActivationJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1261
|
+
#
|
1262
|
+
# * {Types::GetReadSetActivationJobResponse#completion_time #completion_time} => Time
|
1263
|
+
# * {Types::GetReadSetActivationJobResponse#creation_time #creation_time} => Time
|
1264
|
+
# * {Types::GetReadSetActivationJobResponse#id #id} => String
|
1265
|
+
# * {Types::GetReadSetActivationJobResponse#sequence_store_id #sequence_store_id} => String
|
1266
|
+
# * {Types::GetReadSetActivationJobResponse#sources #sources} => Array<Types::ActivateReadSetSourceItem>
|
1267
|
+
# * {Types::GetReadSetActivationJobResponse#status #status} => String
|
1268
|
+
# * {Types::GetReadSetActivationJobResponse#status_message #status_message} => String
|
1269
|
+
#
|
1270
|
+
# @example Request syntax with placeholder values
|
1271
|
+
#
|
1272
|
+
# resp = client.get_read_set_activation_job({
|
1273
|
+
# id: "ActivationJobId", # required
|
1274
|
+
# sequence_store_id: "SequenceStoreId", # required
|
1275
|
+
# })
|
1276
|
+
#
|
1277
|
+
# @example Response structure
|
1278
|
+
#
|
1279
|
+
# resp.completion_time #=> Time
|
1280
|
+
# resp.creation_time #=> Time
|
1281
|
+
# resp.id #=> String
|
1282
|
+
# resp.sequence_store_id #=> String
|
1283
|
+
# resp.sources #=> Array
|
1284
|
+
# resp.sources[0].read_set_id #=> String
|
1285
|
+
# resp.sources[0].status #=> String, one of "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED"
|
1286
|
+
# resp.sources[0].status_message #=> String
|
1287
|
+
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
1288
|
+
# resp.status_message #=> String
|
1289
|
+
#
|
1290
|
+
#
|
1291
|
+
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
1292
|
+
#
|
1293
|
+
# * read_set_activation_job_completed
|
1294
|
+
#
|
1295
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReadSetActivationJob AWS API Documentation
|
1296
|
+
#
|
1297
|
+
# @overload get_read_set_activation_job(params = {})
|
1298
|
+
# @param [Hash] params ({})
|
1299
|
+
def get_read_set_activation_job(params = {}, options = {})
|
1300
|
+
req = build_request(:get_read_set_activation_job, params)
|
1301
|
+
req.send_request(options)
|
1302
|
+
end
|
1303
|
+
|
1304
|
+
# Gets information about a read set export job.
|
1305
|
+
#
|
1306
|
+
# @option params [required, String] :id
|
1307
|
+
# The job's ID.
|
1308
|
+
#
|
1309
|
+
# @option params [required, String] :sequence_store_id
|
1310
|
+
# The job's sequence store ID.
|
1311
|
+
#
|
1312
|
+
# @return [Types::GetReadSetExportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1313
|
+
#
|
1314
|
+
# * {Types::GetReadSetExportJobResponse#completion_time #completion_time} => Time
|
1315
|
+
# * {Types::GetReadSetExportJobResponse#creation_time #creation_time} => Time
|
1316
|
+
# * {Types::GetReadSetExportJobResponse#destination #destination} => String
|
1317
|
+
# * {Types::GetReadSetExportJobResponse#id #id} => String
|
1318
|
+
# * {Types::GetReadSetExportJobResponse#read_sets #read_sets} => Array<Types::ExportReadSetDetail>
|
1319
|
+
# * {Types::GetReadSetExportJobResponse#sequence_store_id #sequence_store_id} => String
|
1320
|
+
# * {Types::GetReadSetExportJobResponse#status #status} => String
|
1321
|
+
# * {Types::GetReadSetExportJobResponse#status_message #status_message} => String
|
1322
|
+
#
|
1323
|
+
# @example Request syntax with placeholder values
|
1324
|
+
#
|
1325
|
+
# resp = client.get_read_set_export_job({
|
1326
|
+
# id: "ExportJobId", # required
|
1327
|
+
# sequence_store_id: "SequenceStoreId", # required
|
1328
|
+
# })
|
1329
|
+
#
|
1330
|
+
# @example Response structure
|
1331
|
+
#
|
1332
|
+
# resp.completion_time #=> Time
|
1333
|
+
# resp.creation_time #=> Time
|
1334
|
+
# resp.destination #=> String
|
1335
|
+
# resp.id #=> String
|
1336
|
+
# resp.read_sets #=> Array
|
1337
|
+
# resp.read_sets[0].id #=> String
|
1338
|
+
# resp.read_sets[0].status #=> String, one of "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED"
|
1339
|
+
# resp.read_sets[0].status_message #=> String
|
1340
|
+
# resp.sequence_store_id #=> String
|
1341
|
+
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
1342
|
+
# resp.status_message #=> String
|
1343
|
+
#
|
1344
|
+
#
|
1345
|
+
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
1346
|
+
#
|
1347
|
+
# * read_set_export_job_completed
|
1348
|
+
#
|
1349
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReadSetExportJob AWS API Documentation
|
1350
|
+
#
|
1351
|
+
# @overload get_read_set_export_job(params = {})
|
1352
|
+
# @param [Hash] params ({})
|
1353
|
+
def get_read_set_export_job(params = {}, options = {})
|
1354
|
+
req = build_request(:get_read_set_export_job, params)
|
1355
|
+
req.send_request(options)
|
1356
|
+
end
|
1357
|
+
|
1358
|
+
# Gets information about a read set import job.
|
1359
|
+
#
|
1360
|
+
# @option params [required, String] :id
|
1361
|
+
# The job's ID.
|
1362
|
+
#
|
1363
|
+
# @option params [required, String] :sequence_store_id
|
1364
|
+
# The job's sequence store ID.
|
1365
|
+
#
|
1366
|
+
# @return [Types::GetReadSetImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1367
|
+
#
|
1368
|
+
# * {Types::GetReadSetImportJobResponse#completion_time #completion_time} => Time
|
1369
|
+
# * {Types::GetReadSetImportJobResponse#creation_time #creation_time} => Time
|
1370
|
+
# * {Types::GetReadSetImportJobResponse#id #id} => String
|
1371
|
+
# * {Types::GetReadSetImportJobResponse#role_arn #role_arn} => String
|
1372
|
+
# * {Types::GetReadSetImportJobResponse#sequence_store_id #sequence_store_id} => String
|
1373
|
+
# * {Types::GetReadSetImportJobResponse#sources #sources} => Array<Types::ImportReadSetSourceItem>
|
1374
|
+
# * {Types::GetReadSetImportJobResponse#status #status} => String
|
1375
|
+
# * {Types::GetReadSetImportJobResponse#status_message #status_message} => String
|
1376
|
+
#
|
1377
|
+
# @example Request syntax with placeholder values
|
1378
|
+
#
|
1379
|
+
# resp = client.get_read_set_import_job({
|
1380
|
+
# id: "ImportJobId", # required
|
1381
|
+
# sequence_store_id: "SequenceStoreId", # required
|
1382
|
+
# })
|
1383
|
+
#
|
1384
|
+
# @example Response structure
|
1385
|
+
#
|
1386
|
+
# resp.completion_time #=> Time
|
1387
|
+
# resp.creation_time #=> Time
|
1388
|
+
# resp.id #=> String
|
1389
|
+
# resp.role_arn #=> String
|
1390
|
+
# resp.sequence_store_id #=> String
|
1391
|
+
# resp.sources #=> Array
|
1392
|
+
# resp.sources[0].description #=> String
|
1393
|
+
# resp.sources[0].generated_from #=> String
|
1394
|
+
# resp.sources[0].name #=> String
|
1395
|
+
# resp.sources[0].reference_arn #=> String
|
1396
|
+
# resp.sources[0].sample_id #=> String
|
1397
|
+
# resp.sources[0].source_file_type #=> String, one of "FASTQ", "BAM", "CRAM"
|
1398
|
+
# resp.sources[0].source_files.source1 #=> String
|
1399
|
+
# resp.sources[0].source_files.source2 #=> String
|
1400
|
+
# resp.sources[0].status #=> String, one of "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED"
|
1401
|
+
# resp.sources[0].status_message #=> String
|
1402
|
+
# resp.sources[0].subject_id #=> String
|
1403
|
+
# resp.sources[0].tags #=> Hash
|
1404
|
+
# resp.sources[0].tags["TagKey"] #=> String
|
1405
|
+
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
1406
|
+
# resp.status_message #=> String
|
1407
|
+
#
|
1408
|
+
#
|
1409
|
+
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
1410
|
+
#
|
1411
|
+
# * read_set_import_job_completed
|
1412
|
+
#
|
1413
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReadSetImportJob AWS API Documentation
|
1414
|
+
#
|
1415
|
+
# @overload get_read_set_import_job(params = {})
|
1416
|
+
# @param [Hash] params ({})
|
1417
|
+
def get_read_set_import_job(params = {}, options = {})
|
1418
|
+
req = build_request(:get_read_set_import_job, params)
|
1419
|
+
req.send_request(options)
|
1420
|
+
end
|
1421
|
+
|
1422
|
+
# Gets details about a read set.
|
1423
|
+
#
|
1424
|
+
# @option params [required, String] :id
|
1425
|
+
# The read set's ID.
|
1426
|
+
#
|
1427
|
+
# @option params [required, String] :sequence_store_id
|
1428
|
+
# The read set's sequence store ID.
|
1429
|
+
#
|
1430
|
+
# @return [Types::GetReadSetMetadataResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1431
|
+
#
|
1432
|
+
# * {Types::GetReadSetMetadataResponse#arn #arn} => String
|
1433
|
+
# * {Types::GetReadSetMetadataResponse#creation_time #creation_time} => Time
|
1434
|
+
# * {Types::GetReadSetMetadataResponse#description #description} => String
|
1435
|
+
# * {Types::GetReadSetMetadataResponse#file_type #file_type} => String
|
1436
|
+
# * {Types::GetReadSetMetadataResponse#files #files} => Types::ReadSetFiles
|
1437
|
+
# * {Types::GetReadSetMetadataResponse#id #id} => String
|
1438
|
+
# * {Types::GetReadSetMetadataResponse#name #name} => String
|
1439
|
+
# * {Types::GetReadSetMetadataResponse#reference_arn #reference_arn} => String
|
1440
|
+
# * {Types::GetReadSetMetadataResponse#sample_id #sample_id} => String
|
1441
|
+
# * {Types::GetReadSetMetadataResponse#sequence_information #sequence_information} => Types::SequenceInformation
|
1442
|
+
# * {Types::GetReadSetMetadataResponse#sequence_store_id #sequence_store_id} => String
|
1443
|
+
# * {Types::GetReadSetMetadataResponse#status #status} => String
|
1444
|
+
# * {Types::GetReadSetMetadataResponse#subject_id #subject_id} => String
|
1445
|
+
#
|
1446
|
+
# @example Request syntax with placeholder values
|
1447
|
+
#
|
1448
|
+
# resp = client.get_read_set_metadata({
|
1449
|
+
# id: "ReadSetId", # required
|
1450
|
+
# sequence_store_id: "SequenceStoreId", # required
|
1451
|
+
# })
|
1452
|
+
#
|
1453
|
+
# @example Response structure
|
1454
|
+
#
|
1455
|
+
# resp.arn #=> String
|
1456
|
+
# resp.creation_time #=> Time
|
1457
|
+
# resp.description #=> String
|
1458
|
+
# resp.file_type #=> String, one of "FASTQ", "BAM", "CRAM"
|
1459
|
+
# resp.files.index.content_length #=> Integer
|
1460
|
+
# resp.files.index.part_size #=> Integer
|
1461
|
+
# resp.files.index.total_parts #=> Integer
|
1462
|
+
# resp.files.source1.content_length #=> Integer
|
1463
|
+
# resp.files.source1.part_size #=> Integer
|
1464
|
+
# resp.files.source1.total_parts #=> Integer
|
1465
|
+
# resp.files.source2.content_length #=> Integer
|
1466
|
+
# resp.files.source2.part_size #=> Integer
|
1467
|
+
# resp.files.source2.total_parts #=> Integer
|
1468
|
+
# resp.id #=> String
|
1469
|
+
# resp.name #=> String
|
1470
|
+
# resp.reference_arn #=> String
|
1471
|
+
# resp.sample_id #=> String
|
1472
|
+
# resp.sequence_information.alignment #=> String
|
1473
|
+
# resp.sequence_information.generated_from #=> String
|
1474
|
+
# resp.sequence_information.total_base_count #=> Integer
|
1475
|
+
# resp.sequence_information.total_read_count #=> Integer
|
1476
|
+
# resp.sequence_store_id #=> String
|
1477
|
+
# resp.status #=> String, one of "ARCHIVED", "ACTIVATING", "ACTIVE", "DELETING", "DELETED"
|
1478
|
+
# resp.subject_id #=> String
|
1479
|
+
#
|
1480
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReadSetMetadata AWS API Documentation
|
1481
|
+
#
|
1482
|
+
# @overload get_read_set_metadata(params = {})
|
1483
|
+
# @param [Hash] params ({})
|
1484
|
+
def get_read_set_metadata(params = {}, options = {})
|
1485
|
+
req = build_request(:get_read_set_metadata, params)
|
1486
|
+
req.send_request(options)
|
1487
|
+
end
|
1488
|
+
|
1489
|
+
# Gets a reference file.
|
1490
|
+
#
|
1491
|
+
# @option params [String] :file
|
1492
|
+
# The file to retrieve.
|
1493
|
+
#
|
1494
|
+
# @option params [required, String] :id
|
1495
|
+
# The reference's ID.
|
1496
|
+
#
|
1497
|
+
# @option params [required, Integer] :part_number
|
1498
|
+
# The part number to retrieve.
|
1499
|
+
#
|
1500
|
+
# @option params [String] :range
|
1501
|
+
# The range to retrieve.
|
1502
|
+
#
|
1503
|
+
# @option params [required, String] :reference_store_id
|
1504
|
+
# The reference's store ID.
|
1505
|
+
#
|
1506
|
+
# @return [Types::GetReferenceResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1507
|
+
#
|
1508
|
+
# * {Types::GetReferenceResponse#payload #payload} => IO
|
1509
|
+
#
|
1510
|
+
# @example Request syntax with placeholder values
|
1511
|
+
#
|
1512
|
+
# resp = client.get_reference({
|
1513
|
+
# file: "SOURCE", # accepts SOURCE, INDEX
|
1514
|
+
# id: "ReferenceId", # required
|
1515
|
+
# part_number: 1, # required
|
1516
|
+
# range: "Range",
|
1517
|
+
# reference_store_id: "ReferenceStoreId", # required
|
1518
|
+
# })
|
1519
|
+
#
|
1520
|
+
# @example Response structure
|
1521
|
+
#
|
1522
|
+
# resp.payload #=> IO
|
1523
|
+
#
|
1524
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReference AWS API Documentation
|
1525
|
+
#
|
1526
|
+
# @overload get_reference(params = {})
|
1527
|
+
# @param [Hash] params ({})
|
1528
|
+
def get_reference(params = {}, options = {}, &block)
|
1529
|
+
req = build_request(:get_reference, params)
|
1530
|
+
req.send_request(options, &block)
|
1531
|
+
end
|
1532
|
+
|
1533
|
+
# Gets information about a reference import job.
|
1534
|
+
#
|
1535
|
+
# @option params [required, String] :id
|
1536
|
+
# The job's ID.
|
1537
|
+
#
|
1538
|
+
# @option params [required, String] :reference_store_id
|
1539
|
+
# The job's reference store ID.
|
1540
|
+
#
|
1541
|
+
# @return [Types::GetReferenceImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1542
|
+
#
|
1543
|
+
# * {Types::GetReferenceImportJobResponse#completion_time #completion_time} => Time
|
1544
|
+
# * {Types::GetReferenceImportJobResponse#creation_time #creation_time} => Time
|
1545
|
+
# * {Types::GetReferenceImportJobResponse#id #id} => String
|
1546
|
+
# * {Types::GetReferenceImportJobResponse#reference_store_id #reference_store_id} => String
|
1547
|
+
# * {Types::GetReferenceImportJobResponse#role_arn #role_arn} => String
|
1548
|
+
# * {Types::GetReferenceImportJobResponse#sources #sources} => Array<Types::ImportReferenceSourceItem>
|
1549
|
+
# * {Types::GetReferenceImportJobResponse#status #status} => String
|
1550
|
+
# * {Types::GetReferenceImportJobResponse#status_message #status_message} => String
|
1551
|
+
#
|
1552
|
+
# @example Request syntax with placeholder values
|
1553
|
+
#
|
1554
|
+
# resp = client.get_reference_import_job({
|
1555
|
+
# id: "ImportJobId", # required
|
1556
|
+
# reference_store_id: "ReferenceStoreId", # required
|
1557
|
+
# })
|
1558
|
+
#
|
1559
|
+
# @example Response structure
|
1560
|
+
#
|
1561
|
+
# resp.completion_time #=> Time
|
1562
|
+
# resp.creation_time #=> Time
|
1563
|
+
# resp.id #=> String
|
1564
|
+
# resp.reference_store_id #=> String
|
1565
|
+
# resp.role_arn #=> String
|
1566
|
+
# resp.sources #=> Array
|
1567
|
+
# resp.sources[0].description #=> String
|
1568
|
+
# resp.sources[0].name #=> String
|
1569
|
+
# resp.sources[0].source_file #=> String
|
1570
|
+
# resp.sources[0].status #=> String, one of "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED"
|
1571
|
+
# resp.sources[0].status_message #=> String
|
1572
|
+
# resp.sources[0].tags #=> Hash
|
1573
|
+
# resp.sources[0].tags["TagKey"] #=> String
|
1574
|
+
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
1575
|
+
# resp.status_message #=> String
|
1576
|
+
#
|
1577
|
+
#
|
1578
|
+
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
1579
|
+
#
|
1580
|
+
# * reference_import_job_completed
|
1581
|
+
#
|
1582
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReferenceImportJob AWS API Documentation
|
1583
|
+
#
|
1584
|
+
# @overload get_reference_import_job(params = {})
|
1585
|
+
# @param [Hash] params ({})
|
1586
|
+
def get_reference_import_job(params = {}, options = {})
|
1587
|
+
req = build_request(:get_reference_import_job, params)
|
1588
|
+
req.send_request(options)
|
1589
|
+
end
|
1590
|
+
|
1591
|
+
# Gets information about a genome reference's metadata.
|
1592
|
+
#
|
1593
|
+
# @option params [required, String] :id
|
1594
|
+
# The reference's ID.
|
1595
|
+
#
|
1596
|
+
# @option params [required, String] :reference_store_id
|
1597
|
+
# The reference's reference store ID.
|
1598
|
+
#
|
1599
|
+
# @return [Types::GetReferenceMetadataResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1600
|
+
#
|
1601
|
+
# * {Types::GetReferenceMetadataResponse#arn #arn} => String
|
1602
|
+
# * {Types::GetReferenceMetadataResponse#creation_time #creation_time} => Time
|
1603
|
+
# * {Types::GetReferenceMetadataResponse#description #description} => String
|
1604
|
+
# * {Types::GetReferenceMetadataResponse#files #files} => Types::ReferenceFiles
|
1605
|
+
# * {Types::GetReferenceMetadataResponse#id #id} => String
|
1606
|
+
# * {Types::GetReferenceMetadataResponse#md5 #md5} => String
|
1607
|
+
# * {Types::GetReferenceMetadataResponse#name #name} => String
|
1608
|
+
# * {Types::GetReferenceMetadataResponse#reference_store_id #reference_store_id} => String
|
1609
|
+
# * {Types::GetReferenceMetadataResponse#status #status} => String
|
1610
|
+
# * {Types::GetReferenceMetadataResponse#update_time #update_time} => Time
|
1611
|
+
#
|
1612
|
+
# @example Request syntax with placeholder values
|
1613
|
+
#
|
1614
|
+
# resp = client.get_reference_metadata({
|
1615
|
+
# id: "ReferenceId", # required
|
1616
|
+
# reference_store_id: "ReferenceStoreId", # required
|
1617
|
+
# })
|
1618
|
+
#
|
1619
|
+
# @example Response structure
|
1620
|
+
#
|
1621
|
+
# resp.arn #=> String
|
1622
|
+
# resp.creation_time #=> Time
|
1623
|
+
# resp.description #=> String
|
1624
|
+
# resp.files.index.content_length #=> Integer
|
1625
|
+
# resp.files.index.part_size #=> Integer
|
1626
|
+
# resp.files.index.total_parts #=> Integer
|
1627
|
+
# resp.files.source.content_length #=> Integer
|
1628
|
+
# resp.files.source.part_size #=> Integer
|
1629
|
+
# resp.files.source.total_parts #=> Integer
|
1630
|
+
# resp.id #=> String
|
1631
|
+
# resp.md5 #=> String
|
1632
|
+
# resp.name #=> String
|
1633
|
+
# resp.reference_store_id #=> String
|
1634
|
+
# resp.status #=> String, one of "ACTIVE", "DELETING", "DELETED"
|
1635
|
+
# resp.update_time #=> Time
|
1636
|
+
#
|
1637
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReferenceMetadata AWS API Documentation
|
1638
|
+
#
|
1639
|
+
# @overload get_reference_metadata(params = {})
|
1640
|
+
# @param [Hash] params ({})
|
1641
|
+
def get_reference_metadata(params = {}, options = {})
|
1642
|
+
req = build_request(:get_reference_metadata, params)
|
1643
|
+
req.send_request(options)
|
1644
|
+
end
|
1645
|
+
|
1646
|
+
# Gets information about a reference store.
|
1647
|
+
#
|
1648
|
+
# @option params [required, String] :id
|
1649
|
+
# The store's ID.
|
1650
|
+
#
|
1651
|
+
# @return [Types::GetReferenceStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1652
|
+
#
|
1653
|
+
# * {Types::GetReferenceStoreResponse#arn #arn} => String
|
1654
|
+
# * {Types::GetReferenceStoreResponse#creation_time #creation_time} => Time
|
1655
|
+
# * {Types::GetReferenceStoreResponse#description #description} => String
|
1656
|
+
# * {Types::GetReferenceStoreResponse#id #id} => String
|
1657
|
+
# * {Types::GetReferenceStoreResponse#name #name} => String
|
1658
|
+
# * {Types::GetReferenceStoreResponse#sse_config #sse_config} => Types::SseConfig
|
1659
|
+
#
|
1660
|
+
# @example Request syntax with placeholder values
|
1661
|
+
#
|
1662
|
+
# resp = client.get_reference_store({
|
1663
|
+
# id: "ReferenceStoreId", # required
|
1664
|
+
# })
|
1665
|
+
#
|
1666
|
+
# @example Response structure
|
1667
|
+
#
|
1668
|
+
# resp.arn #=> String
|
1669
|
+
# resp.creation_time #=> Time
|
1670
|
+
# resp.description #=> String
|
1671
|
+
# resp.id #=> String
|
1672
|
+
# resp.name #=> String
|
1673
|
+
# resp.sse_config.key_arn #=> String
|
1674
|
+
# resp.sse_config.type #=> String, one of "KMS"
|
1675
|
+
#
|
1676
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReferenceStore AWS API Documentation
|
1677
|
+
#
|
1678
|
+
# @overload get_reference_store(params = {})
|
1679
|
+
# @param [Hash] params ({})
|
1680
|
+
def get_reference_store(params = {}, options = {})
|
1681
|
+
req = build_request(:get_reference_store, params)
|
1682
|
+
req.send_request(options)
|
1683
|
+
end
|
1684
|
+
|
1685
|
+
# Gets information about a workflow run.
|
1686
|
+
#
|
1687
|
+
# @option params [Array<String>] :export
|
1688
|
+
# The run's export format.
|
1689
|
+
#
|
1690
|
+
# @option params [required, String] :id
|
1691
|
+
# The run's ID.
|
1692
|
+
#
|
1693
|
+
# @return [Types::GetRunResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1694
|
+
#
|
1695
|
+
# * {Types::GetRunResponse#arn #arn} => String
|
1696
|
+
# * {Types::GetRunResponse#creation_time #creation_time} => Time
|
1697
|
+
# * {Types::GetRunResponse#definition #definition} => String
|
1698
|
+
# * {Types::GetRunResponse#digest #digest} => String
|
1699
|
+
# * {Types::GetRunResponse#id #id} => String
|
1700
|
+
# * {Types::GetRunResponse#log_level #log_level} => String
|
1701
|
+
# * {Types::GetRunResponse#name #name} => String
|
1702
|
+
# * {Types::GetRunResponse#output_uri #output_uri} => String
|
1703
|
+
# * {Types::GetRunResponse#parameters #parameters} => Hash,Array,String,Numeric,Boolean
|
1704
|
+
# * {Types::GetRunResponse#priority #priority} => Integer
|
1705
|
+
# * {Types::GetRunResponse#resource_digests #resource_digests} => Hash<String,String>
|
1706
|
+
# * {Types::GetRunResponse#role_arn #role_arn} => String
|
1707
|
+
# * {Types::GetRunResponse#run_group_id #run_group_id} => String
|
1708
|
+
# * {Types::GetRunResponse#run_id #run_id} => String
|
1709
|
+
# * {Types::GetRunResponse#start_time #start_time} => Time
|
1710
|
+
# * {Types::GetRunResponse#started_by #started_by} => String
|
1711
|
+
# * {Types::GetRunResponse#status #status} => String
|
1712
|
+
# * {Types::GetRunResponse#status_message #status_message} => String
|
1713
|
+
# * {Types::GetRunResponse#stop_time #stop_time} => Time
|
1714
|
+
# * {Types::GetRunResponse#storage_capacity #storage_capacity} => Integer
|
1715
|
+
# * {Types::GetRunResponse#tags #tags} => Hash<String,String>
|
1716
|
+
# * {Types::GetRunResponse#workflow_id #workflow_id} => String
|
1717
|
+
# * {Types::GetRunResponse#workflow_type #workflow_type} => String
|
1718
|
+
#
|
1719
|
+
# @example Request syntax with placeholder values
|
1720
|
+
#
|
1721
|
+
# resp = client.get_run({
|
1722
|
+
# export: ["DEFINITION"], # accepts DEFINITION
|
1723
|
+
# id: "RunId", # required
|
1724
|
+
# })
|
1725
|
+
#
|
1726
|
+
# @example Response structure
|
1727
|
+
#
|
1728
|
+
# resp.arn #=> String
|
1729
|
+
# resp.creation_time #=> Time
|
1730
|
+
# resp.definition #=> String
|
1731
|
+
# resp.digest #=> String
|
1732
|
+
# resp.id #=> String
|
1733
|
+
# resp.log_level #=> String, one of "OFF", "FATAL", "ERROR", "ALL"
|
1734
|
+
# resp.name #=> String
|
1735
|
+
# resp.output_uri #=> String
|
1736
|
+
# resp.priority #=> Integer
|
1737
|
+
# resp.resource_digests #=> Hash
|
1738
|
+
# resp.resource_digests["RunResourceDigestKey"] #=> String
|
1739
|
+
# resp.role_arn #=> String
|
1740
|
+
# resp.run_group_id #=> String
|
1741
|
+
# resp.run_id #=> String
|
1742
|
+
# resp.start_time #=> Time
|
1743
|
+
# resp.started_by #=> String
|
1744
|
+
# resp.status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "DELETED", "CANCELLED", "FAILED"
|
1745
|
+
# resp.status_message #=> String
|
1746
|
+
# resp.stop_time #=> Time
|
1747
|
+
# resp.storage_capacity #=> Integer
|
1748
|
+
# resp.tags #=> Hash
|
1749
|
+
# resp.tags["TagKey"] #=> String
|
1750
|
+
# resp.workflow_id #=> String
|
1751
|
+
# resp.workflow_type #=> String, one of "PRIVATE"
|
1752
|
+
#
|
1753
|
+
#
|
1754
|
+
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
1755
|
+
#
|
1756
|
+
# * run_completed
|
1757
|
+
# * run_running
|
1758
|
+
#
|
1759
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetRun AWS API Documentation
|
1760
|
+
#
|
1761
|
+
# @overload get_run(params = {})
|
1762
|
+
# @param [Hash] params ({})
|
1763
|
+
def get_run(params = {}, options = {})
|
1764
|
+
req = build_request(:get_run, params)
|
1765
|
+
req.send_request(options)
|
1766
|
+
end
|
1767
|
+
|
1768
|
+
# Gets information about a workflow run group.
|
1769
|
+
#
|
1770
|
+
# @option params [required, String] :id
|
1771
|
+
# The group's ID.
|
1772
|
+
#
|
1773
|
+
# @return [Types::GetRunGroupResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1774
|
+
#
|
1775
|
+
# * {Types::GetRunGroupResponse#arn #arn} => String
|
1776
|
+
# * {Types::GetRunGroupResponse#creation_time #creation_time} => Time
|
1777
|
+
# * {Types::GetRunGroupResponse#id #id} => String
|
1778
|
+
# * {Types::GetRunGroupResponse#max_cpus #max_cpus} => Integer
|
1779
|
+
# * {Types::GetRunGroupResponse#max_duration #max_duration} => Integer
|
1780
|
+
# * {Types::GetRunGroupResponse#max_runs #max_runs} => Integer
|
1781
|
+
# * {Types::GetRunGroupResponse#name #name} => String
|
1782
|
+
# * {Types::GetRunGroupResponse#tags #tags} => Hash<String,String>
|
1783
|
+
#
|
1784
|
+
# @example Request syntax with placeholder values
|
1785
|
+
#
|
1786
|
+
# resp = client.get_run_group({
|
1787
|
+
# id: "RunGroupId", # required
|
1788
|
+
# })
|
1789
|
+
#
|
1790
|
+
# @example Response structure
|
1791
|
+
#
|
1792
|
+
# resp.arn #=> String
|
1793
|
+
# resp.creation_time #=> Time
|
1794
|
+
# resp.id #=> String
|
1795
|
+
# resp.max_cpus #=> Integer
|
1796
|
+
# resp.max_duration #=> Integer
|
1797
|
+
# resp.max_runs #=> Integer
|
1798
|
+
# resp.name #=> String
|
1799
|
+
# resp.tags #=> Hash
|
1800
|
+
# resp.tags["TagKey"] #=> String
|
1801
|
+
#
|
1802
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetRunGroup AWS API Documentation
|
1803
|
+
#
|
1804
|
+
# @overload get_run_group(params = {})
|
1805
|
+
# @param [Hash] params ({})
|
1806
|
+
def get_run_group(params = {}, options = {})
|
1807
|
+
req = build_request(:get_run_group, params)
|
1808
|
+
req.send_request(options)
|
1809
|
+
end
|
1810
|
+
|
1811
|
+
# Gets information about a workflow run task.
|
1812
|
+
#
|
1813
|
+
# @option params [required, String] :id
|
1814
|
+
# The task's ID.
|
1815
|
+
#
|
1816
|
+
# @option params [required, String] :task_id
|
1817
|
+
# The task's ID.
|
1818
|
+
#
|
1819
|
+
# @return [Types::GetRunTaskResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1820
|
+
#
|
1821
|
+
# * {Types::GetRunTaskResponse#cpus #cpus} => Integer
|
1822
|
+
# * {Types::GetRunTaskResponse#creation_time #creation_time} => Time
|
1823
|
+
# * {Types::GetRunTaskResponse#log_stream #log_stream} => String
|
1824
|
+
# * {Types::GetRunTaskResponse#memory #memory} => Integer
|
1825
|
+
# * {Types::GetRunTaskResponse#name #name} => String
|
1826
|
+
# * {Types::GetRunTaskResponse#start_time #start_time} => Time
|
1827
|
+
# * {Types::GetRunTaskResponse#status #status} => String
|
1828
|
+
# * {Types::GetRunTaskResponse#status_message #status_message} => String
|
1829
|
+
# * {Types::GetRunTaskResponse#stop_time #stop_time} => Time
|
1830
|
+
# * {Types::GetRunTaskResponse#task_id #task_id} => String
|
1831
|
+
#
|
1832
|
+
# @example Request syntax with placeholder values
|
1833
|
+
#
|
1834
|
+
# resp = client.get_run_task({
|
1835
|
+
# id: "RunId", # required
|
1836
|
+
# task_id: "TaskId", # required
|
1837
|
+
# })
|
1838
|
+
#
|
1839
|
+
# @example Response structure
|
1840
|
+
#
|
1841
|
+
# resp.cpus #=> Integer
|
1842
|
+
# resp.creation_time #=> Time
|
1843
|
+
# resp.log_stream #=> String
|
1844
|
+
# resp.memory #=> Integer
|
1845
|
+
# resp.name #=> String
|
1846
|
+
# resp.start_time #=> Time
|
1847
|
+
# resp.status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "CANCELLED", "FAILED"
|
1848
|
+
# resp.status_message #=> String
|
1849
|
+
# resp.stop_time #=> Time
|
1850
|
+
# resp.task_id #=> String
|
1851
|
+
#
|
1852
|
+
#
|
1853
|
+
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
1854
|
+
#
|
1855
|
+
# * task_completed
|
1856
|
+
# * task_running
|
1857
|
+
#
|
1858
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetRunTask AWS API Documentation
|
1859
|
+
#
|
1860
|
+
# @overload get_run_task(params = {})
|
1861
|
+
# @param [Hash] params ({})
|
1862
|
+
def get_run_task(params = {}, options = {})
|
1863
|
+
req = build_request(:get_run_task, params)
|
1864
|
+
req.send_request(options)
|
1865
|
+
end
|
1866
|
+
|
1867
|
+
# Gets information about a sequence store.
|
1868
|
+
#
|
1869
|
+
# @option params [required, String] :id
|
1870
|
+
# The store's ID.
|
1871
|
+
#
|
1872
|
+
# @return [Types::GetSequenceStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1873
|
+
#
|
1874
|
+
# * {Types::GetSequenceStoreResponse#arn #arn} => String
|
1875
|
+
# * {Types::GetSequenceStoreResponse#creation_time #creation_time} => Time
|
1876
|
+
# * {Types::GetSequenceStoreResponse#description #description} => String
|
1877
|
+
# * {Types::GetSequenceStoreResponse#id #id} => String
|
1878
|
+
# * {Types::GetSequenceStoreResponse#name #name} => String
|
1879
|
+
# * {Types::GetSequenceStoreResponse#sse_config #sse_config} => Types::SseConfig
|
1880
|
+
#
|
1881
|
+
# @example Request syntax with placeholder values
|
1882
|
+
#
|
1883
|
+
# resp = client.get_sequence_store({
|
1884
|
+
# id: "SequenceStoreId", # required
|
1885
|
+
# })
|
1886
|
+
#
|
1887
|
+
# @example Response structure
|
1888
|
+
#
|
1889
|
+
# resp.arn #=> String
|
1890
|
+
# resp.creation_time #=> Time
|
1891
|
+
# resp.description #=> String
|
1892
|
+
# resp.id #=> String
|
1893
|
+
# resp.name #=> String
|
1894
|
+
# resp.sse_config.key_arn #=> String
|
1895
|
+
# resp.sse_config.type #=> String, one of "KMS"
|
1896
|
+
#
|
1897
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetSequenceStore AWS API Documentation
|
1898
|
+
#
|
1899
|
+
# @overload get_sequence_store(params = {})
|
1900
|
+
# @param [Hash] params ({})
|
1901
|
+
def get_sequence_store(params = {}, options = {})
|
1902
|
+
req = build_request(:get_sequence_store, params)
|
1903
|
+
req.send_request(options)
|
1904
|
+
end
|
1905
|
+
|
1906
|
+
# Gets information about a variant import job.
|
1907
|
+
#
|
1908
|
+
# @option params [required, String] :job_id
|
1909
|
+
# The job's ID.
|
1910
|
+
#
|
1911
|
+
# @return [Types::GetVariantImportResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1912
|
+
#
|
1913
|
+
# * {Types::GetVariantImportResponse#completion_time #completion_time} => Time
|
1914
|
+
# * {Types::GetVariantImportResponse#creation_time #creation_time} => Time
|
1915
|
+
# * {Types::GetVariantImportResponse#destination_name #destination_name} => String
|
1916
|
+
# * {Types::GetVariantImportResponse#id #id} => String
|
1917
|
+
# * {Types::GetVariantImportResponse#items #items} => Array<Types::VariantImportItemDetail>
|
1918
|
+
# * {Types::GetVariantImportResponse#role_arn #role_arn} => String
|
1919
|
+
# * {Types::GetVariantImportResponse#run_left_normalization #run_left_normalization} => Boolean
|
1920
|
+
# * {Types::GetVariantImportResponse#status #status} => String
|
1921
|
+
# * {Types::GetVariantImportResponse#status_message #status_message} => String
|
1922
|
+
# * {Types::GetVariantImportResponse#update_time #update_time} => Time
|
1923
|
+
#
|
1924
|
+
# @example Request syntax with placeholder values
|
1925
|
+
#
|
1926
|
+
# resp = client.get_variant_import_job({
|
1927
|
+
# job_id: "ResourceId", # required
|
1928
|
+
# })
|
1929
|
+
#
|
1930
|
+
# @example Response structure
|
1931
|
+
#
|
1932
|
+
# resp.completion_time #=> Time
|
1933
|
+
# resp.creation_time #=> Time
|
1934
|
+
# resp.destination_name #=> String
|
1935
|
+
# resp.id #=> String
|
1936
|
+
# resp.items #=> Array
|
1937
|
+
# resp.items[0].job_status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED"
|
1938
|
+
# resp.items[0].source #=> String
|
1939
|
+
# resp.role_arn #=> String
|
1940
|
+
# resp.run_left_normalization #=> Boolean
|
1941
|
+
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED"
|
1942
|
+
# resp.status_message #=> String
|
1943
|
+
# resp.update_time #=> Time
|
1944
|
+
#
|
1945
|
+
#
|
1946
|
+
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
1947
|
+
#
|
1948
|
+
# * variant_import_job_created
|
1949
|
+
#
|
1950
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetVariantImportJob AWS API Documentation
|
1951
|
+
#
|
1952
|
+
# @overload get_variant_import_job(params = {})
|
1953
|
+
# @param [Hash] params ({})
|
1954
|
+
def get_variant_import_job(params = {}, options = {})
|
1955
|
+
req = build_request(:get_variant_import_job, params)
|
1956
|
+
req.send_request(options)
|
1957
|
+
end
|
1958
|
+
|
1959
|
+
# Gets information about a variant store.
|
1960
|
+
#
|
1961
|
+
# @option params [required, String] :name
|
1962
|
+
# The store's name.
|
1963
|
+
#
|
1964
|
+
# @return [Types::GetVariantStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1965
|
+
#
|
1966
|
+
# * {Types::GetVariantStoreResponse#creation_time #creation_time} => Time
|
1967
|
+
# * {Types::GetVariantStoreResponse#description #description} => String
|
1968
|
+
# * {Types::GetVariantStoreResponse#id #id} => String
|
1969
|
+
# * {Types::GetVariantStoreResponse#name #name} => String
|
1970
|
+
# * {Types::GetVariantStoreResponse#reference #reference} => Types::ReferenceItem
|
1971
|
+
# * {Types::GetVariantStoreResponse#sse_config #sse_config} => Types::SseConfig
|
1972
|
+
# * {Types::GetVariantStoreResponse#status #status} => String
|
1973
|
+
# * {Types::GetVariantStoreResponse#status_message #status_message} => String
|
1974
|
+
# * {Types::GetVariantStoreResponse#store_arn #store_arn} => String
|
1975
|
+
# * {Types::GetVariantStoreResponse#store_size_bytes #store_size_bytes} => Integer
|
1976
|
+
# * {Types::GetVariantStoreResponse#tags #tags} => Hash<String,String>
|
1977
|
+
# * {Types::GetVariantStoreResponse#update_time #update_time} => Time
|
1978
|
+
#
|
1979
|
+
# @example Request syntax with placeholder values
|
1980
|
+
#
|
1981
|
+
# resp = client.get_variant_store({
|
1982
|
+
# name: "String", # required
|
1983
|
+
# })
|
1984
|
+
#
|
1985
|
+
# @example Response structure
|
1986
|
+
#
|
1987
|
+
# resp.creation_time #=> Time
|
1988
|
+
# resp.description #=> String
|
1989
|
+
# resp.id #=> String
|
1990
|
+
# resp.name #=> String
|
1991
|
+
# resp.reference.reference_arn #=> String
|
1992
|
+
# resp.sse_config.key_arn #=> String
|
1993
|
+
# resp.sse_config.type #=> String, one of "KMS"
|
1994
|
+
# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
1995
|
+
# resp.status_message #=> String
|
1996
|
+
# resp.store_arn #=> String
|
1997
|
+
# resp.store_size_bytes #=> Integer
|
1998
|
+
# resp.tags #=> Hash
|
1999
|
+
# resp.tags["TagKey"] #=> String
|
2000
|
+
# resp.update_time #=> Time
|
2001
|
+
#
|
2002
|
+
#
|
2003
|
+
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
2004
|
+
#
|
2005
|
+
# * variant_store_created
|
2006
|
+
# * variant_store_deleted
|
2007
|
+
#
|
2008
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetVariantStore AWS API Documentation
|
2009
|
+
#
|
2010
|
+
# @overload get_variant_store(params = {})
|
2011
|
+
# @param [Hash] params ({})
|
2012
|
+
def get_variant_store(params = {}, options = {})
|
2013
|
+
req = build_request(:get_variant_store, params)
|
2014
|
+
req.send_request(options)
|
2015
|
+
end
|
2016
|
+
|
2017
|
+
# Gets information about a workflow.
|
2018
|
+
#
|
2019
|
+
# @option params [Array<String>] :export
|
2020
|
+
# The export format for the workflow.
|
2021
|
+
#
|
2022
|
+
# @option params [required, String] :id
|
2023
|
+
# The workflow's ID.
|
2024
|
+
#
|
2025
|
+
# @option params [String] :type
|
2026
|
+
# The workflow's type.
|
2027
|
+
#
|
2028
|
+
# @return [Types::GetWorkflowResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2029
|
+
#
|
2030
|
+
# * {Types::GetWorkflowResponse#arn #arn} => String
|
2031
|
+
# * {Types::GetWorkflowResponse#creation_time #creation_time} => Time
|
2032
|
+
# * {Types::GetWorkflowResponse#definition #definition} => String
|
2033
|
+
# * {Types::GetWorkflowResponse#description #description} => String
|
2034
|
+
# * {Types::GetWorkflowResponse#digest #digest} => String
|
2035
|
+
# * {Types::GetWorkflowResponse#engine #engine} => String
|
2036
|
+
# * {Types::GetWorkflowResponse#id #id} => String
|
2037
|
+
# * {Types::GetWorkflowResponse#main #main} => String
|
2038
|
+
# * {Types::GetWorkflowResponse#name #name} => String
|
2039
|
+
# * {Types::GetWorkflowResponse#parameter_template #parameter_template} => Hash<String,Types::WorkflowParameter>
|
2040
|
+
# * {Types::GetWorkflowResponse#status #status} => String
|
2041
|
+
# * {Types::GetWorkflowResponse#status_message #status_message} => String
|
2042
|
+
# * {Types::GetWorkflowResponse#storage_capacity #storage_capacity} => Integer
|
2043
|
+
# * {Types::GetWorkflowResponse#tags #tags} => Hash<String,String>
|
2044
|
+
# * {Types::GetWorkflowResponse#type #type} => String
|
2045
|
+
#
|
2046
|
+
# @example Request syntax with placeholder values
|
2047
|
+
#
|
2048
|
+
# resp = client.get_workflow({
|
2049
|
+
# export: ["DEFINITION"], # accepts DEFINITION
|
2050
|
+
# id: "WorkflowId", # required
|
2051
|
+
# type: "PRIVATE", # accepts PRIVATE
|
2052
|
+
# })
|
2053
|
+
#
|
2054
|
+
# @example Response structure
|
2055
|
+
#
|
2056
|
+
# resp.arn #=> String
|
2057
|
+
# resp.creation_time #=> Time
|
2058
|
+
# resp.definition #=> String
|
2059
|
+
# resp.description #=> String
|
2060
|
+
# resp.digest #=> String
|
2061
|
+
# resp.engine #=> String, one of "WDL", "NEXTFLOW"
|
2062
|
+
# resp.id #=> String
|
2063
|
+
# resp.main #=> String
|
2064
|
+
# resp.name #=> String
|
2065
|
+
# resp.parameter_template #=> Hash
|
2066
|
+
# resp.parameter_template["WorkflowParameterName"].description #=> String
|
2067
|
+
# resp.parameter_template["WorkflowParameterName"].optional #=> Boolean
|
2068
|
+
# resp.status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED"
|
2069
|
+
# resp.status_message #=> String
|
2070
|
+
# resp.storage_capacity #=> Integer
|
2071
|
+
# resp.tags #=> Hash
|
2072
|
+
# resp.tags["TagKey"] #=> String
|
2073
|
+
# resp.type #=> String, one of "PRIVATE"
|
2074
|
+
#
|
2075
|
+
#
|
2076
|
+
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
2077
|
+
#
|
2078
|
+
# * workflow_active
|
2079
|
+
#
|
2080
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetWorkflow AWS API Documentation
|
2081
|
+
#
|
2082
|
+
# @overload get_workflow(params = {})
|
2083
|
+
# @param [Hash] params ({})
|
2084
|
+
def get_workflow(params = {}, options = {})
|
2085
|
+
req = build_request(:get_workflow, params)
|
2086
|
+
req.send_request(options)
|
2087
|
+
end
|
2088
|
+
|
2089
|
+
# Retrieves a list of annotation import jobs.
|
2090
|
+
#
|
2091
|
+
# @option params [Types::ListAnnotationImportJobsFilter] :filter
|
2092
|
+
# A filter to apply to the list.
|
2093
|
+
#
|
2094
|
+
# @option params [Array<String>] :ids
|
2095
|
+
# IDs of annotation import jobs to retrieve.
|
2096
|
+
#
|
2097
|
+
# @option params [Integer] :max_results
|
2098
|
+
# The maximum number of jobs to return in one page of results.
|
2099
|
+
#
|
2100
|
+
# @option params [String] :next_token
|
2101
|
+
# Specify the pagination token from a previous request to retrieve the
|
2102
|
+
# next page of results.
|
2103
|
+
#
|
2104
|
+
# @return [Types::ListAnnotationImportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2105
|
+
#
|
2106
|
+
# * {Types::ListAnnotationImportJobsResponse#annotation_import_jobs #annotation_import_jobs} => Array<Types::AnnotationImportJobItem>
|
2107
|
+
# * {Types::ListAnnotationImportJobsResponse#next_token #next_token} => String
|
2108
|
+
#
|
2109
|
+
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2110
|
+
#
|
2111
|
+
# @example Request syntax with placeholder values
|
2112
|
+
#
|
2113
|
+
# resp = client.list_annotation_import_jobs({
|
2114
|
+
# filter: {
|
2115
|
+
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLED, COMPLETED, FAILED
|
2116
|
+
# store_name: "String",
|
2117
|
+
# },
|
2118
|
+
# ids: ["ResourceIdentifier"],
|
2119
|
+
# max_results: 1,
|
2120
|
+
# next_token: "ListAnnotationImportJobsRequestNextTokenString",
|
2121
|
+
# })
|
2122
|
+
#
|
2123
|
+
# @example Response structure
|
2124
|
+
#
|
2125
|
+
# resp.annotation_import_jobs #=> Array
|
2126
|
+
# resp.annotation_import_jobs[0].completion_time #=> Time
|
2127
|
+
# resp.annotation_import_jobs[0].creation_time #=> Time
|
2128
|
+
# resp.annotation_import_jobs[0].destination_name #=> String
|
2129
|
+
# resp.annotation_import_jobs[0].id #=> String
|
2130
|
+
# resp.annotation_import_jobs[0].role_arn #=> String
|
2131
|
+
# resp.annotation_import_jobs[0].run_left_normalization #=> Boolean
|
2132
|
+
# resp.annotation_import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED"
|
2133
|
+
# resp.annotation_import_jobs[0].update_time #=> Time
|
2134
|
+
# resp.next_token #=> String
|
2135
|
+
#
|
2136
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListAnnotationImportJobs AWS API Documentation
|
2137
|
+
#
|
2138
|
+
# @overload list_annotation_import_jobs(params = {})
|
2139
|
+
# @param [Hash] params ({})
|
2140
|
+
def list_annotation_import_jobs(params = {}, options = {})
|
2141
|
+
req = build_request(:list_annotation_import_jobs, params)
|
2142
|
+
req.send_request(options)
|
2143
|
+
end
|
2144
|
+
|
2145
|
+
# Retrieves a list of annotation stores.
|
2146
|
+
#
|
2147
|
+
# @option params [Types::ListAnnotationStoresFilter] :filter
|
2148
|
+
# A filter to apply to the list.
|
2149
|
+
#
|
2150
|
+
# @option params [Array<String>] :ids
|
2151
|
+
# IDs of stores to list.
|
2152
|
+
#
|
2153
|
+
# @option params [Integer] :max_results
|
2154
|
+
# The maximum number of stores to return in one page of results.
|
2155
|
+
#
|
2156
|
+
# @option params [String] :next_token
|
2157
|
+
# Specify the pagination token from a previous request to retrieve the
|
2158
|
+
# next page of results.
|
2159
|
+
#
|
2160
|
+
# @return [Types::ListAnnotationStoresResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2161
|
+
#
|
2162
|
+
# * {Types::ListAnnotationStoresResponse#annotation_stores #annotation_stores} => Array<Types::AnnotationStoreItem>
|
2163
|
+
# * {Types::ListAnnotationStoresResponse#next_token #next_token} => String
|
2164
|
+
#
|
2165
|
+
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2166
|
+
#
|
2167
|
+
# @example Request syntax with placeholder values
|
2168
|
+
#
|
2169
|
+
# resp = client.list_annotation_stores({
|
2170
|
+
# filter: {
|
2171
|
+
# status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED
|
2172
|
+
# },
|
2173
|
+
# ids: ["ResourceIdentifier"],
|
2174
|
+
# max_results: 1,
|
2175
|
+
# next_token: "ListAnnotationStoresRequestNextTokenString",
|
2176
|
+
# })
|
2177
|
+
#
|
2178
|
+
# @example Response structure
|
2179
|
+
#
|
2180
|
+
# resp.annotation_stores #=> Array
|
2181
|
+
# resp.annotation_stores[0].creation_time #=> Time
|
2182
|
+
# resp.annotation_stores[0].description #=> String
|
2183
|
+
# resp.annotation_stores[0].id #=> String
|
2184
|
+
# resp.annotation_stores[0].name #=> String
|
2185
|
+
# resp.annotation_stores[0].reference.reference_arn #=> String
|
2186
|
+
# resp.annotation_stores[0].sse_config.key_arn #=> String
|
2187
|
+
# resp.annotation_stores[0].sse_config.type #=> String, one of "KMS"
|
2188
|
+
# resp.annotation_stores[0].status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
2189
|
+
# resp.annotation_stores[0].status_message #=> String
|
2190
|
+
# resp.annotation_stores[0].store_arn #=> String
|
2191
|
+
# resp.annotation_stores[0].store_format #=> String, one of "GFF", "TSV", "VCF"
|
2192
|
+
# resp.annotation_stores[0].store_size_bytes #=> Integer
|
2193
|
+
# resp.annotation_stores[0].update_time #=> Time
|
2194
|
+
# resp.next_token #=> String
|
2195
|
+
#
|
2196
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListAnnotationStores AWS API Documentation
|
2197
|
+
#
|
2198
|
+
# @overload list_annotation_stores(params = {})
|
2199
|
+
# @param [Hash] params ({})
|
2200
|
+
def list_annotation_stores(params = {}, options = {})
|
2201
|
+
req = build_request(:list_annotation_stores, params)
|
2202
|
+
req.send_request(options)
|
2203
|
+
end
|
2204
|
+
|
2205
|
+
# Retrieves a list of read set activation jobs.
|
2206
|
+
#
|
2207
|
+
# @option params [Types::ActivateReadSetFilter] :filter
|
2208
|
+
# A filter to apply to the list.
|
2209
|
+
#
|
2210
|
+
# @option params [Integer] :max_results
|
2211
|
+
# The maximum number of read set activation jobs to return in one page
|
2212
|
+
# of results.
|
2213
|
+
#
|
2214
|
+
# @option params [String] :next_token
|
2215
|
+
# Specify the pagination token from a previous request to retrieve the
|
2216
|
+
# next page of results.
|
2217
|
+
#
|
2218
|
+
# @option params [required, String] :sequence_store_id
|
2219
|
+
# The read set's sequence store ID.
|
2220
|
+
#
|
2221
|
+
# @return [Types::ListReadSetActivationJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2222
|
+
#
|
2223
|
+
# * {Types::ListReadSetActivationJobsResponse#activation_jobs #activation_jobs} => Array<Types::ActivateReadSetJobItem>
|
2224
|
+
# * {Types::ListReadSetActivationJobsResponse#next_token #next_token} => String
|
2225
|
+
#
|
2226
|
+
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2227
|
+
#
|
2228
|
+
# @example Request syntax with placeholder values
|
2229
|
+
#
|
2230
|
+
# resp = client.list_read_set_activation_jobs({
|
2231
|
+
# filter: {
|
2232
|
+
# created_after: Time.now,
|
2233
|
+
# created_before: Time.now,
|
2234
|
+
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
2235
|
+
# },
|
2236
|
+
# max_results: 1,
|
2237
|
+
# next_token: "NextToken",
|
2238
|
+
# sequence_store_id: "SequenceStoreId", # required
|
2239
|
+
# })
|
2240
|
+
#
|
2241
|
+
# @example Response structure
|
2242
|
+
#
|
2243
|
+
# resp.activation_jobs #=> Array
|
2244
|
+
# resp.activation_jobs[0].completion_time #=> Time
|
2245
|
+
# resp.activation_jobs[0].creation_time #=> Time
|
2246
|
+
# resp.activation_jobs[0].id #=> String
|
2247
|
+
# resp.activation_jobs[0].sequence_store_id #=> String
|
2248
|
+
# resp.activation_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
2249
|
+
# resp.next_token #=> String
|
2250
|
+
#
|
2251
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSetActivationJobs AWS API Documentation
|
2252
|
+
#
|
2253
|
+
# @overload list_read_set_activation_jobs(params = {})
|
2254
|
+
# @param [Hash] params ({})
|
2255
|
+
def list_read_set_activation_jobs(params = {}, options = {})
|
2256
|
+
req = build_request(:list_read_set_activation_jobs, params)
|
2257
|
+
req.send_request(options)
|
2258
|
+
end
|
2259
|
+
|
2260
|
+
# Retrieves a list of read set export jobs.
|
2261
|
+
#
|
2262
|
+
# @option params [Types::ExportReadSetFilter] :filter
|
2263
|
+
# A filter to apply to the list.
|
2264
|
+
#
|
2265
|
+
# @option params [Integer] :max_results
|
2266
|
+
# The maximum number of jobs to return in one page of results.
|
2267
|
+
#
|
2268
|
+
# @option params [String] :next_token
|
2269
|
+
# Specify the pagination token from a previous request to retrieve the
|
2270
|
+
# next page of results.
|
2271
|
+
#
|
2272
|
+
# @option params [required, String] :sequence_store_id
|
2273
|
+
# The jobs' sequence store ID.
|
2274
|
+
#
|
2275
|
+
# @return [Types::ListReadSetExportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2276
|
+
#
|
2277
|
+
# * {Types::ListReadSetExportJobsResponse#export_jobs #export_jobs} => Array<Types::ExportReadSetJobDetail>
|
2278
|
+
# * {Types::ListReadSetExportJobsResponse#next_token #next_token} => String
|
2279
|
+
#
|
2280
|
+
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2281
|
+
#
|
2282
|
+
# @example Request syntax with placeholder values
|
2283
|
+
#
|
2284
|
+
# resp = client.list_read_set_export_jobs({
|
2285
|
+
# filter: {
|
2286
|
+
# created_after: Time.now,
|
2287
|
+
# created_before: Time.now,
|
2288
|
+
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
2289
|
+
# },
|
2290
|
+
# max_results: 1,
|
2291
|
+
# next_token: "NextToken",
|
2292
|
+
# sequence_store_id: "SequenceStoreId", # required
|
2293
|
+
# })
|
2294
|
+
#
|
2295
|
+
# @example Response structure
|
2296
|
+
#
|
2297
|
+
# resp.export_jobs #=> Array
|
2298
|
+
# resp.export_jobs[0].completion_time #=> Time
|
2299
|
+
# resp.export_jobs[0].creation_time #=> Time
|
2300
|
+
# resp.export_jobs[0].destination #=> String
|
2301
|
+
# resp.export_jobs[0].id #=> String
|
2302
|
+
# resp.export_jobs[0].sequence_store_id #=> String
|
2303
|
+
# resp.export_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
2304
|
+
# resp.next_token #=> String
|
2305
|
+
#
|
2306
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSetExportJobs AWS API Documentation
|
2307
|
+
#
|
2308
|
+
# @overload list_read_set_export_jobs(params = {})
|
2309
|
+
# @param [Hash] params ({})
|
2310
|
+
def list_read_set_export_jobs(params = {}, options = {})
|
2311
|
+
req = build_request(:list_read_set_export_jobs, params)
|
2312
|
+
req.send_request(options)
|
2313
|
+
end
|
2314
|
+
|
2315
|
+
# Retrieves a list of read set import jobs.
|
2316
|
+
#
|
2317
|
+
# @option params [Types::ImportReadSetFilter] :filter
|
2318
|
+
# A filter to apply to the list.
|
2319
|
+
#
|
2320
|
+
# @option params [Integer] :max_results
|
2321
|
+
# The maximum number of jobs to return in one page of results.
|
2322
|
+
#
|
2323
|
+
# @option params [String] :next_token
|
2324
|
+
# Specify the pagination token from a previous request to retrieve the
|
2325
|
+
# next page of results.
|
2326
|
+
#
|
2327
|
+
# @option params [required, String] :sequence_store_id
|
2328
|
+
# The jobs' sequence store ID.
|
2329
|
+
#
|
2330
|
+
# @return [Types::ListReadSetImportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2331
|
+
#
|
2332
|
+
# * {Types::ListReadSetImportJobsResponse#import_jobs #import_jobs} => Array<Types::ImportReadSetJobItem>
|
2333
|
+
# * {Types::ListReadSetImportJobsResponse#next_token #next_token} => String
|
2334
|
+
#
|
2335
|
+
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2336
|
+
#
|
2337
|
+
# @example Request syntax with placeholder values
|
2338
|
+
#
|
2339
|
+
# resp = client.list_read_set_import_jobs({
|
2340
|
+
# filter: {
|
2341
|
+
# created_after: Time.now,
|
2342
|
+
# created_before: Time.now,
|
2343
|
+
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
2344
|
+
# },
|
2345
|
+
# max_results: 1,
|
2346
|
+
# next_token: "NextToken",
|
2347
|
+
# sequence_store_id: "SequenceStoreId", # required
|
2348
|
+
# })
|
2349
|
+
#
|
2350
|
+
# @example Response structure
|
2351
|
+
#
|
2352
|
+
# resp.import_jobs #=> Array
|
2353
|
+
# resp.import_jobs[0].completion_time #=> Time
|
2354
|
+
# resp.import_jobs[0].creation_time #=> Time
|
2355
|
+
# resp.import_jobs[0].id #=> String
|
2356
|
+
# resp.import_jobs[0].role_arn #=> String
|
2357
|
+
# resp.import_jobs[0].sequence_store_id #=> String
|
2358
|
+
# resp.import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
2359
|
+
# resp.next_token #=> String
|
2360
|
+
#
|
2361
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSetImportJobs AWS API Documentation
|
2362
|
+
#
|
2363
|
+
# @overload list_read_set_import_jobs(params = {})
|
2364
|
+
# @param [Hash] params ({})
|
2365
|
+
def list_read_set_import_jobs(params = {}, options = {})
|
2366
|
+
req = build_request(:list_read_set_import_jobs, params)
|
2367
|
+
req.send_request(options)
|
2368
|
+
end
|
2369
|
+
|
2370
|
+
# Retrieves a list of read sets.
|
2371
|
+
#
|
2372
|
+
# @option params [Types::ReadSetFilter] :filter
|
2373
|
+
# A filter to apply to the list.
|
2374
|
+
#
|
2375
|
+
# @option params [Integer] :max_results
|
2376
|
+
# The maximum number of read sets to return in one page of results.
|
2377
|
+
#
|
2378
|
+
# @option params [String] :next_token
|
2379
|
+
# Specify the pagination token from a previous request to retrieve the
|
2380
|
+
# next page of results.
|
2381
|
+
#
|
2382
|
+
# @option params [required, String] :sequence_store_id
|
2383
|
+
# The jobs' sequence store ID.
|
2384
|
+
#
|
2385
|
+
# @return [Types::ListReadSetsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2386
|
+
#
|
2387
|
+
# * {Types::ListReadSetsResponse#next_token #next_token} => String
|
2388
|
+
# * {Types::ListReadSetsResponse#read_sets #read_sets} => Array<Types::ReadSetListItem>
|
2389
|
+
#
|
2390
|
+
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2391
|
+
#
|
2392
|
+
# @example Request syntax with placeholder values
|
2393
|
+
#
|
2394
|
+
# resp = client.list_read_sets({
|
2395
|
+
# filter: {
|
2396
|
+
# created_after: Time.now,
|
2397
|
+
# created_before: Time.now,
|
2398
|
+
# name: "ReadSetName",
|
2399
|
+
# reference_arn: "ReferenceArn",
|
2400
|
+
# status: "ARCHIVED", # accepts ARCHIVED, ACTIVATING, ACTIVE, DELETING, DELETED
|
2401
|
+
# },
|
2402
|
+
# max_results: 1,
|
2403
|
+
# next_token: "NextToken",
|
2404
|
+
# sequence_store_id: "SequenceStoreId", # required
|
2405
|
+
# })
|
2406
|
+
#
|
2407
|
+
# @example Response structure
|
2408
|
+
#
|
2409
|
+
# resp.next_token #=> String
|
2410
|
+
# resp.read_sets #=> Array
|
2411
|
+
# resp.read_sets[0].arn #=> String
|
2412
|
+
# resp.read_sets[0].creation_time #=> Time
|
2413
|
+
# resp.read_sets[0].description #=> String
|
2414
|
+
# resp.read_sets[0].file_type #=> String, one of "FASTQ", "BAM", "CRAM"
|
2415
|
+
# resp.read_sets[0].id #=> String
|
2416
|
+
# resp.read_sets[0].name #=> String
|
2417
|
+
# resp.read_sets[0].reference_arn #=> String
|
2418
|
+
# resp.read_sets[0].sample_id #=> String
|
2419
|
+
# resp.read_sets[0].sequence_information.alignment #=> String
|
2420
|
+
# resp.read_sets[0].sequence_information.generated_from #=> String
|
2421
|
+
# resp.read_sets[0].sequence_information.total_base_count #=> Integer
|
2422
|
+
# resp.read_sets[0].sequence_information.total_read_count #=> Integer
|
2423
|
+
# resp.read_sets[0].sequence_store_id #=> String
|
2424
|
+
# resp.read_sets[0].status #=> String, one of "ARCHIVED", "ACTIVATING", "ACTIVE", "DELETING", "DELETED"
|
2425
|
+
# resp.read_sets[0].subject_id #=> String
|
2426
|
+
#
|
2427
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSets AWS API Documentation
|
2428
|
+
#
|
2429
|
+
# @overload list_read_sets(params = {})
|
2430
|
+
# @param [Hash] params ({})
|
2431
|
+
def list_read_sets(params = {}, options = {})
|
2432
|
+
req = build_request(:list_read_sets, params)
|
2433
|
+
req.send_request(options)
|
2434
|
+
end
|
2435
|
+
|
2436
|
+
# Retrieves a list of reference import jobs.
|
2437
|
+
#
|
2438
|
+
# @option params [Types::ImportReferenceFilter] :filter
|
2439
|
+
# A filter to apply to the list.
|
2440
|
+
#
|
2441
|
+
# @option params [Integer] :max_results
|
2442
|
+
# The maximum number of jobs to return in one page of results.
|
2443
|
+
#
|
2444
|
+
# @option params [String] :next_token
|
2445
|
+
# Specify the pagination token from a previous request to retrieve the
|
2446
|
+
# next page of results.
|
2447
|
+
#
|
2448
|
+
# @option params [required, String] :reference_store_id
|
2449
|
+
# The job's reference store ID.
|
2450
|
+
#
|
2451
|
+
# @return [Types::ListReferenceImportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2452
|
+
#
|
2453
|
+
# * {Types::ListReferenceImportJobsResponse#import_jobs #import_jobs} => Array<Types::ImportReferenceJobItem>
|
2454
|
+
# * {Types::ListReferenceImportJobsResponse#next_token #next_token} => String
|
2455
|
+
#
|
2456
|
+
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2457
|
+
#
|
2458
|
+
# @example Request syntax with placeholder values
|
2459
|
+
#
|
2460
|
+
# resp = client.list_reference_import_jobs({
|
2461
|
+
# filter: {
|
2462
|
+
# created_after: Time.now,
|
2463
|
+
# created_before: Time.now,
|
2464
|
+
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
2465
|
+
# },
|
2466
|
+
# max_results: 1,
|
2467
|
+
# next_token: "NextToken",
|
2468
|
+
# reference_store_id: "ReferenceStoreId", # required
|
2469
|
+
# })
|
2470
|
+
#
|
2471
|
+
# @example Response structure
|
2472
|
+
#
|
2473
|
+
# resp.import_jobs #=> Array
|
2474
|
+
# resp.import_jobs[0].completion_time #=> Time
|
2475
|
+
# resp.import_jobs[0].creation_time #=> Time
|
2476
|
+
# resp.import_jobs[0].id #=> String
|
2477
|
+
# resp.import_jobs[0].reference_store_id #=> String
|
2478
|
+
# resp.import_jobs[0].role_arn #=> String
|
2479
|
+
# resp.import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
2480
|
+
# resp.next_token #=> String
|
2481
|
+
#
|
2482
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReferenceImportJobs AWS API Documentation
|
2483
|
+
#
|
2484
|
+
# @overload list_reference_import_jobs(params = {})
|
2485
|
+
# @param [Hash] params ({})
|
2486
|
+
def list_reference_import_jobs(params = {}, options = {})
|
2487
|
+
req = build_request(:list_reference_import_jobs, params)
|
2488
|
+
req.send_request(options)
|
2489
|
+
end
|
2490
|
+
|
2491
|
+
# Retrieves a list of reference stores.
|
2492
|
+
#
|
2493
|
+
# @option params [Types::ReferenceStoreFilter] :filter
|
2494
|
+
# A filter to apply to the list.
|
2495
|
+
#
|
2496
|
+
# @option params [Integer] :max_results
|
2497
|
+
# The maximum number of stores to return in one page of results.
|
2498
|
+
#
|
2499
|
+
# @option params [String] :next_token
|
2500
|
+
# Specify the pagination token from a previous request to retrieve the
|
2501
|
+
# next page of results.
|
2502
|
+
#
|
2503
|
+
# @return [Types::ListReferenceStoresResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2504
|
+
#
|
2505
|
+
# * {Types::ListReferenceStoresResponse#next_token #next_token} => String
|
2506
|
+
# * {Types::ListReferenceStoresResponse#reference_stores #reference_stores} => Array<Types::ReferenceStoreDetail>
|
2507
|
+
#
|
2508
|
+
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2509
|
+
#
|
2510
|
+
# @example Request syntax with placeholder values
|
2511
|
+
#
|
2512
|
+
# resp = client.list_reference_stores({
|
2513
|
+
# filter: {
|
2514
|
+
# created_after: Time.now,
|
2515
|
+
# created_before: Time.now,
|
2516
|
+
# name: "ReferenceStoreName",
|
2517
|
+
# },
|
2518
|
+
# max_results: 1,
|
2519
|
+
# next_token: "NextToken",
|
2520
|
+
# })
|
2521
|
+
#
|
2522
|
+
# @example Response structure
|
2523
|
+
#
|
2524
|
+
# resp.next_token #=> String
|
2525
|
+
# resp.reference_stores #=> Array
|
2526
|
+
# resp.reference_stores[0].arn #=> String
|
2527
|
+
# resp.reference_stores[0].creation_time #=> Time
|
2528
|
+
# resp.reference_stores[0].description #=> String
|
2529
|
+
# resp.reference_stores[0].id #=> String
|
2530
|
+
# resp.reference_stores[0].name #=> String
|
2531
|
+
# resp.reference_stores[0].sse_config.key_arn #=> String
|
2532
|
+
# resp.reference_stores[0].sse_config.type #=> String, one of "KMS"
|
2533
|
+
#
|
2534
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReferenceStores AWS API Documentation
|
2535
|
+
#
|
2536
|
+
# @overload list_reference_stores(params = {})
|
2537
|
+
# @param [Hash] params ({})
|
2538
|
+
def list_reference_stores(params = {}, options = {})
|
2539
|
+
req = build_request(:list_reference_stores, params)
|
2540
|
+
req.send_request(options)
|
2541
|
+
end
|
2542
|
+
|
2543
|
+
# Retrieves a list of references.
|
2544
|
+
#
|
2545
|
+
# @option params [Types::ReferenceFilter] :filter
|
2546
|
+
# A filter to apply to the list.
|
2547
|
+
#
|
2548
|
+
# @option params [Integer] :max_results
|
2549
|
+
# The maximum number of references to return in one page of results.
|
2550
|
+
#
|
2551
|
+
# @option params [String] :next_token
|
2552
|
+
# Specify the pagination token from a previous request to retrieve the
|
2553
|
+
# next page of results.
|
2554
|
+
#
|
2555
|
+
# @option params [required, String] :reference_store_id
|
2556
|
+
# The references' reference store ID.
|
2557
|
+
#
|
2558
|
+
# @return [Types::ListReferencesResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2559
|
+
#
|
2560
|
+
# * {Types::ListReferencesResponse#next_token #next_token} => String
|
2561
|
+
# * {Types::ListReferencesResponse#references #references} => Array<Types::ReferenceListItem>
|
2562
|
+
#
|
2563
|
+
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2564
|
+
#
|
2565
|
+
# @example Request syntax with placeholder values
|
2566
|
+
#
|
2567
|
+
# resp = client.list_references({
|
2568
|
+
# filter: {
|
2569
|
+
# created_after: Time.now,
|
2570
|
+
# created_before: Time.now,
|
2571
|
+
# md5: "Md5",
|
2572
|
+
# name: "ReferenceName",
|
2573
|
+
# },
|
2574
|
+
# max_results: 1,
|
2575
|
+
# next_token: "NextToken",
|
2576
|
+
# reference_store_id: "ReferenceStoreId", # required
|
2577
|
+
# })
|
2578
|
+
#
|
2579
|
+
# @example Response structure
|
2580
|
+
#
|
2581
|
+
# resp.next_token #=> String
|
2582
|
+
# resp.references #=> Array
|
2583
|
+
# resp.references[0].arn #=> String
|
2584
|
+
# resp.references[0].creation_time #=> Time
|
2585
|
+
# resp.references[0].description #=> String
|
2586
|
+
# resp.references[0].id #=> String
|
2587
|
+
# resp.references[0].md5 #=> String
|
2588
|
+
# resp.references[0].name #=> String
|
2589
|
+
# resp.references[0].reference_store_id #=> String
|
2590
|
+
# resp.references[0].status #=> String, one of "ACTIVE", "DELETING", "DELETED"
|
2591
|
+
# resp.references[0].update_time #=> Time
|
2592
|
+
#
|
2593
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReferences AWS API Documentation
|
2594
|
+
#
|
2595
|
+
# @overload list_references(params = {})
|
2596
|
+
# @param [Hash] params ({})
|
2597
|
+
def list_references(params = {}, options = {})
|
2598
|
+
req = build_request(:list_references, params)
|
2599
|
+
req.send_request(options)
|
2600
|
+
end
|
2601
|
+
|
2602
|
+
# Retrieves a list of run groups.
|
2603
|
+
#
|
2604
|
+
# @option params [Integer] :max_results
|
2605
|
+
# The maximum number of run groups to return in one page of results.
|
2606
|
+
#
|
2607
|
+
# @option params [String] :name
|
2608
|
+
# The run groups' name.
|
2609
|
+
#
|
2610
|
+
# @option params [String] :starting_token
|
2611
|
+
# Specify the pagination token from a previous request to retrieve the
|
2612
|
+
# next page of results.
|
2613
|
+
#
|
2614
|
+
# @return [Types::ListRunGroupsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2615
|
+
#
|
2616
|
+
# * {Types::ListRunGroupsResponse#items #items} => Array<Types::RunGroupListItem>
|
2617
|
+
# * {Types::ListRunGroupsResponse#next_token #next_token} => String
|
2618
|
+
#
|
2619
|
+
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2620
|
+
#
|
2621
|
+
# @example Request syntax with placeholder values
|
2622
|
+
#
|
2623
|
+
# resp = client.list_run_groups({
|
2624
|
+
# max_results: 1,
|
2625
|
+
# name: "RunGroupName",
|
2626
|
+
# starting_token: "RunGroupListToken",
|
2627
|
+
# })
|
2628
|
+
#
|
2629
|
+
# @example Response structure
|
2630
|
+
#
|
2631
|
+
# resp.items #=> Array
|
2632
|
+
# resp.items[0].arn #=> String
|
2633
|
+
# resp.items[0].creation_time #=> Time
|
2634
|
+
# resp.items[0].id #=> String
|
2635
|
+
# resp.items[0].max_cpus #=> Integer
|
2636
|
+
# resp.items[0].max_duration #=> Integer
|
2637
|
+
# resp.items[0].max_runs #=> Integer
|
2638
|
+
# resp.items[0].name #=> String
|
2639
|
+
# resp.next_token #=> String
|
2640
|
+
#
|
2641
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListRunGroups AWS API Documentation
|
2642
|
+
#
|
2643
|
+
# @overload list_run_groups(params = {})
|
2644
|
+
# @param [Hash] params ({})
|
2645
|
+
def list_run_groups(params = {}, options = {})
|
2646
|
+
req = build_request(:list_run_groups, params)
|
2647
|
+
req.send_request(options)
|
2648
|
+
end
|
2649
|
+
|
2650
|
+
# Retrieves a list of tasks for a run.
|
2651
|
+
#
|
2652
|
+
# @option params [required, String] :id
|
2653
|
+
# The run's ID.
|
2654
|
+
#
|
2655
|
+
# @option params [Integer] :max_results
|
2656
|
+
# The maximum number of run tasks to return in one page of results.
|
2657
|
+
#
|
2658
|
+
# @option params [String] :starting_token
|
2659
|
+
# Specify the pagination token from a previous request to retrieve the
|
2660
|
+
# next page of results.
|
2661
|
+
#
|
2662
|
+
# @option params [String] :status
|
2663
|
+
# Filter the list by status.
|
2664
|
+
#
|
2665
|
+
# @return [Types::ListRunTasksResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2666
|
+
#
|
2667
|
+
# * {Types::ListRunTasksResponse#items #items} => Array<Types::TaskListItem>
|
2668
|
+
# * {Types::ListRunTasksResponse#next_token #next_token} => String
|
2669
|
+
#
|
2670
|
+
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2671
|
+
#
|
2672
|
+
# @example Request syntax with placeholder values
|
2673
|
+
#
|
2674
|
+
# resp = client.list_run_tasks({
|
2675
|
+
# id: "RunId", # required
|
2676
|
+
# max_results: 1,
|
2677
|
+
# starting_token: "TaskListToken",
|
2678
|
+
# status: "PENDING", # accepts PENDING, STARTING, RUNNING, STOPPING, COMPLETED, CANCELLED, FAILED
|
2679
|
+
# })
|
2680
|
+
#
|
2681
|
+
# @example Response structure
|
2682
|
+
#
|
2683
|
+
# resp.items #=> Array
|
2684
|
+
# resp.items[0].cpus #=> Integer
|
2685
|
+
# resp.items[0].creation_time #=> Time
|
2686
|
+
# resp.items[0].memory #=> Integer
|
2687
|
+
# resp.items[0].name #=> String
|
2688
|
+
# resp.items[0].start_time #=> Time
|
2689
|
+
# resp.items[0].status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "CANCELLED", "FAILED"
|
2690
|
+
# resp.items[0].stop_time #=> Time
|
2691
|
+
# resp.items[0].task_id #=> String
|
2692
|
+
# resp.next_token #=> String
|
2693
|
+
#
|
2694
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListRunTasks AWS API Documentation
|
2695
|
+
#
|
2696
|
+
# @overload list_run_tasks(params = {})
|
2697
|
+
# @param [Hash] params ({})
|
2698
|
+
def list_run_tasks(params = {}, options = {})
|
2699
|
+
req = build_request(:list_run_tasks, params)
|
2700
|
+
req.send_request(options)
|
2701
|
+
end
|
2702
|
+
|
2703
|
+
# Retrieves a list of runs.
|
2704
|
+
#
|
2705
|
+
# @option params [Integer] :max_results
|
2706
|
+
# The maximum number of runs to return in one page of results.
|
2707
|
+
#
|
2708
|
+
# @option params [String] :name
|
2709
|
+
# Filter the list by run name.
|
2710
|
+
#
|
2711
|
+
# @option params [String] :run_group_id
|
2712
|
+
# Filter the list by run group ID.
|
2713
|
+
#
|
2714
|
+
# @option params [String] :starting_token
|
2715
|
+
# Specify the pagination token from a previous request to retrieve the
|
2716
|
+
# next page of results.
|
2717
|
+
#
|
2718
|
+
# @return [Types::ListRunsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2719
|
+
#
|
2720
|
+
# * {Types::ListRunsResponse#items #items} => Array<Types::RunListItem>
|
2721
|
+
# * {Types::ListRunsResponse#next_token #next_token} => String
|
2722
|
+
#
|
2723
|
+
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2724
|
+
#
|
2725
|
+
# @example Request syntax with placeholder values
|
2726
|
+
#
|
2727
|
+
# resp = client.list_runs({
|
2728
|
+
# max_results: 1,
|
2729
|
+
# name: "RunName",
|
2730
|
+
# run_group_id: "RunGroupId",
|
2731
|
+
# starting_token: "RunListToken",
|
2732
|
+
# })
|
2733
|
+
#
|
2734
|
+
# @example Response structure
|
2735
|
+
#
|
2736
|
+
# resp.items #=> Array
|
2737
|
+
# resp.items[0].arn #=> String
|
2738
|
+
# resp.items[0].creation_time #=> Time
|
2739
|
+
# resp.items[0].id #=> String
|
2740
|
+
# resp.items[0].name #=> String
|
2741
|
+
# resp.items[0].priority #=> Integer
|
2742
|
+
# resp.items[0].start_time #=> Time
|
2743
|
+
# resp.items[0].status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "DELETED", "CANCELLED", "FAILED"
|
2744
|
+
# resp.items[0].stop_time #=> Time
|
2745
|
+
# resp.items[0].storage_capacity #=> Integer
|
2746
|
+
# resp.items[0].workflow_id #=> String
|
2747
|
+
# resp.next_token #=> String
|
2748
|
+
#
|
2749
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListRuns AWS API Documentation
|
2750
|
+
#
|
2751
|
+
# @overload list_runs(params = {})
|
2752
|
+
# @param [Hash] params ({})
|
2753
|
+
def list_runs(params = {}, options = {})
|
2754
|
+
req = build_request(:list_runs, params)
|
2755
|
+
req.send_request(options)
|
2756
|
+
end
|
2757
|
+
|
2758
|
+
# Retrieves a list of sequence stores.
|
2759
|
+
#
|
2760
|
+
# @option params [Types::SequenceStoreFilter] :filter
|
2761
|
+
# A filter to apply to the list.
|
2762
|
+
#
|
2763
|
+
# @option params [Integer] :max_results
|
2764
|
+
# The maximum number of stores to return in one page of results.
|
2765
|
+
#
|
2766
|
+
# @option params [String] :next_token
|
2767
|
+
# Specify the pagination token from a previous request to retrieve the
|
2768
|
+
# next page of results.
|
2769
|
+
#
|
2770
|
+
# @return [Types::ListSequenceStoresResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2771
|
+
#
|
2772
|
+
# * {Types::ListSequenceStoresResponse#next_token #next_token} => String
|
2773
|
+
# * {Types::ListSequenceStoresResponse#sequence_stores #sequence_stores} => Array<Types::SequenceStoreDetail>
|
2774
|
+
#
|
2775
|
+
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2776
|
+
#
|
2777
|
+
# @example Request syntax with placeholder values
|
2778
|
+
#
|
2779
|
+
# resp = client.list_sequence_stores({
|
2780
|
+
# filter: {
|
2781
|
+
# created_after: Time.now,
|
2782
|
+
# created_before: Time.now,
|
2783
|
+
# name: "SequenceStoreName",
|
2784
|
+
# },
|
2785
|
+
# max_results: 1,
|
2786
|
+
# next_token: "NextToken",
|
2787
|
+
# })
|
2788
|
+
#
|
2789
|
+
# @example Response structure
|
2790
|
+
#
|
2791
|
+
# resp.next_token #=> String
|
2792
|
+
# resp.sequence_stores #=> Array
|
2793
|
+
# resp.sequence_stores[0].arn #=> String
|
2794
|
+
# resp.sequence_stores[0].creation_time #=> Time
|
2795
|
+
# resp.sequence_stores[0].description #=> String
|
2796
|
+
# resp.sequence_stores[0].id #=> String
|
2797
|
+
# resp.sequence_stores[0].name #=> String
|
2798
|
+
# resp.sequence_stores[0].sse_config.key_arn #=> String
|
2799
|
+
# resp.sequence_stores[0].sse_config.type #=> String, one of "KMS"
|
2800
|
+
#
|
2801
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListSequenceStores AWS API Documentation
|
2802
|
+
#
|
2803
|
+
# @overload list_sequence_stores(params = {})
|
2804
|
+
# @param [Hash] params ({})
|
2805
|
+
def list_sequence_stores(params = {}, options = {})
|
2806
|
+
req = build_request(:list_sequence_stores, params)
|
2807
|
+
req.send_request(options)
|
2808
|
+
end
|
2809
|
+
|
2810
|
+
# Retrieves a list of tags for a resource.
|
2811
|
+
#
|
2812
|
+
# @option params [required, String] :resource_arn
|
2813
|
+
# The resource's ARN.
|
2814
|
+
#
|
2815
|
+
# @return [Types::ListTagsForResourceResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2816
|
+
#
|
2817
|
+
# * {Types::ListTagsForResourceResponse#tags #tags} => Hash<String,String>
|
2818
|
+
#
|
2819
|
+
# @example Request syntax with placeholder values
|
2820
|
+
#
|
2821
|
+
# resp = client.list_tags_for_resource({
|
2822
|
+
# resource_arn: "TagArn", # required
|
2823
|
+
# })
|
2824
|
+
#
|
2825
|
+
# @example Response structure
|
2826
|
+
#
|
2827
|
+
# resp.tags #=> Hash
|
2828
|
+
# resp.tags["TagKey"] #=> String
|
2829
|
+
#
|
2830
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListTagsForResource AWS API Documentation
|
2831
|
+
#
|
2832
|
+
# @overload list_tags_for_resource(params = {})
|
2833
|
+
# @param [Hash] params ({})
|
2834
|
+
def list_tags_for_resource(params = {}, options = {})
|
2835
|
+
req = build_request(:list_tags_for_resource, params)
|
2836
|
+
req.send_request(options)
|
2837
|
+
end
|
2838
|
+
|
2839
|
+
# Retrieves a list of variant import jobs.
|
2840
|
+
#
|
2841
|
+
# @option params [Types::ListVariantImportJobsFilter] :filter
|
2842
|
+
# A filter to apply to the list.
|
2843
|
+
#
|
2844
|
+
# @option params [Array<String>] :ids
|
2845
|
+
# A list of job IDs.
|
2846
|
+
#
|
2847
|
+
# @option params [Integer] :max_results
|
2848
|
+
# The maximum number of import jobs to return in one page of results.
|
2849
|
+
#
|
2850
|
+
# @option params [String] :next_token
|
2851
|
+
# Specify the pagination token from a previous request to retrieve the
|
2852
|
+
# next page of results.
|
2853
|
+
#
|
2854
|
+
# @return [Types::ListVariantImportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2855
|
+
#
|
2856
|
+
# * {Types::ListVariantImportJobsResponse#next_token #next_token} => String
|
2857
|
+
# * {Types::ListVariantImportJobsResponse#variant_import_jobs #variant_import_jobs} => Array<Types::VariantImportJobItem>
|
2858
|
+
#
|
2859
|
+
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2860
|
+
#
|
2861
|
+
# @example Request syntax with placeholder values
|
2862
|
+
#
|
2863
|
+
# resp = client.list_variant_import_jobs({
|
2864
|
+
# filter: {
|
2865
|
+
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLED, COMPLETED, FAILED
|
2866
|
+
# store_name: "String",
|
2867
|
+
# },
|
2868
|
+
# ids: ["ResourceIdentifier"],
|
2869
|
+
# max_results: 1,
|
2870
|
+
# next_token: "ListVariantImportJobsRequestNextTokenString",
|
2871
|
+
# })
|
2872
|
+
#
|
2873
|
+
# @example Response structure
|
2874
|
+
#
|
2875
|
+
# resp.next_token #=> String
|
2876
|
+
# resp.variant_import_jobs #=> Array
|
2877
|
+
# resp.variant_import_jobs[0].completion_time #=> Time
|
2878
|
+
# resp.variant_import_jobs[0].creation_time #=> Time
|
2879
|
+
# resp.variant_import_jobs[0].destination_name #=> String
|
2880
|
+
# resp.variant_import_jobs[0].id #=> String
|
2881
|
+
# resp.variant_import_jobs[0].role_arn #=> String
|
2882
|
+
# resp.variant_import_jobs[0].run_left_normalization #=> Boolean
|
2883
|
+
# resp.variant_import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED"
|
2884
|
+
# resp.variant_import_jobs[0].update_time #=> Time
|
2885
|
+
#
|
2886
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListVariantImportJobs AWS API Documentation
|
2887
|
+
#
|
2888
|
+
# @overload list_variant_import_jobs(params = {})
|
2889
|
+
# @param [Hash] params ({})
|
2890
|
+
def list_variant_import_jobs(params = {}, options = {})
|
2891
|
+
req = build_request(:list_variant_import_jobs, params)
|
2892
|
+
req.send_request(options)
|
2893
|
+
end
|
2894
|
+
|
2895
|
+
# Retrieves a list of variant stores.
|
2896
|
+
#
|
2897
|
+
# @option params [Types::ListVariantStoresFilter] :filter
|
2898
|
+
# A filter to apply to the list.
|
2899
|
+
#
|
2900
|
+
# @option params [Array<String>] :ids
|
2901
|
+
# A list of store IDs.
|
2902
|
+
#
|
2903
|
+
# @option params [Integer] :max_results
|
2904
|
+
# The maximum number of stores to return in one page of results.
|
2905
|
+
#
|
2906
|
+
# @option params [String] :next_token
|
2907
|
+
# Specify the pagination token from a previous request to retrieve the
|
2908
|
+
# next page of results.
|
2909
|
+
#
|
2910
|
+
# @return [Types::ListVariantStoresResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2911
|
+
#
|
2912
|
+
# * {Types::ListVariantStoresResponse#next_token #next_token} => String
|
2913
|
+
# * {Types::ListVariantStoresResponse#variant_stores #variant_stores} => Array<Types::VariantStoreItem>
|
2914
|
+
#
|
2915
|
+
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2916
|
+
#
|
2917
|
+
# @example Request syntax with placeholder values
|
2918
|
+
#
|
2919
|
+
# resp = client.list_variant_stores({
|
2920
|
+
# filter: {
|
2921
|
+
# status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED
|
2922
|
+
# },
|
2923
|
+
# ids: ["ResourceIdentifier"],
|
2924
|
+
# max_results: 1,
|
2925
|
+
# next_token: "ListVariantStoresRequestNextTokenString",
|
2926
|
+
# })
|
2927
|
+
#
|
2928
|
+
# @example Response structure
|
2929
|
+
#
|
2930
|
+
# resp.next_token #=> String
|
2931
|
+
# resp.variant_stores #=> Array
|
2932
|
+
# resp.variant_stores[0].creation_time #=> Time
|
2933
|
+
# resp.variant_stores[0].description #=> String
|
2934
|
+
# resp.variant_stores[0].id #=> String
|
2935
|
+
# resp.variant_stores[0].name #=> String
|
2936
|
+
# resp.variant_stores[0].reference.reference_arn #=> String
|
2937
|
+
# resp.variant_stores[0].sse_config.key_arn #=> String
|
2938
|
+
# resp.variant_stores[0].sse_config.type #=> String, one of "KMS"
|
2939
|
+
# resp.variant_stores[0].status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
2940
|
+
# resp.variant_stores[0].status_message #=> String
|
2941
|
+
# resp.variant_stores[0].store_arn #=> String
|
2942
|
+
# resp.variant_stores[0].store_size_bytes #=> Integer
|
2943
|
+
# resp.variant_stores[0].update_time #=> Time
|
2944
|
+
#
|
2945
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListVariantStores AWS API Documentation
|
2946
|
+
#
|
2947
|
+
# @overload list_variant_stores(params = {})
|
2948
|
+
# @param [Hash] params ({})
|
2949
|
+
def list_variant_stores(params = {}, options = {})
|
2950
|
+
req = build_request(:list_variant_stores, params)
|
2951
|
+
req.send_request(options)
|
2952
|
+
end
|
2953
|
+
|
2954
|
+
# Retrieves a list of workflows.
|
2955
|
+
#
|
2956
|
+
# @option params [Integer] :max_results
|
2957
|
+
# The maximum number of workflows to return in one page of results.
|
2958
|
+
#
|
2959
|
+
# @option params [String] :name
|
2960
|
+
# The workflows' name.
|
2961
|
+
#
|
2962
|
+
# @option params [String] :starting_token
|
2963
|
+
# Specify the pagination token from a previous request to retrieve the
|
2964
|
+
# next page of results.
|
2965
|
+
#
|
2966
|
+
# @option params [String] :type
|
2967
|
+
# The workflows' type.
|
2968
|
+
#
|
2969
|
+
# @return [Types::ListWorkflowsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2970
|
+
#
|
2971
|
+
# * {Types::ListWorkflowsResponse#items #items} => Array<Types::WorkflowListItem>
|
2972
|
+
# * {Types::ListWorkflowsResponse#next_token #next_token} => String
|
2973
|
+
#
|
2974
|
+
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2975
|
+
#
|
2976
|
+
# @example Request syntax with placeholder values
|
2977
|
+
#
|
2978
|
+
# resp = client.list_workflows({
|
2979
|
+
# max_results: 1,
|
2980
|
+
# name: "WorkflowName",
|
2981
|
+
# starting_token: "WorkflowListToken",
|
2982
|
+
# type: "PRIVATE", # accepts PRIVATE
|
2983
|
+
# })
|
2984
|
+
#
|
2985
|
+
# @example Response structure
|
2986
|
+
#
|
2987
|
+
# resp.items #=> Array
|
2988
|
+
# resp.items[0].arn #=> String
|
2989
|
+
# resp.items[0].creation_time #=> Time
|
2990
|
+
# resp.items[0].digest #=> String
|
2991
|
+
# resp.items[0].id #=> String
|
2992
|
+
# resp.items[0].name #=> String
|
2993
|
+
# resp.items[0].status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED"
|
2994
|
+
# resp.items[0].type #=> String, one of "PRIVATE"
|
2995
|
+
# resp.next_token #=> String
|
2996
|
+
#
|
2997
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListWorkflows AWS API Documentation
|
2998
|
+
#
|
2999
|
+
# @overload list_workflows(params = {})
|
3000
|
+
# @param [Hash] params ({})
|
3001
|
+
def list_workflows(params = {}, options = {})
|
3002
|
+
req = build_request(:list_workflows, params)
|
3003
|
+
req.send_request(options)
|
3004
|
+
end
|
3005
|
+
|
3006
|
+
# Starts an annotation import job.
|
3007
|
+
#
|
3008
|
+
# @option params [required, String] :destination_name
|
3009
|
+
# A destination annotation store for the job.
|
3010
|
+
#
|
3011
|
+
# @option params [Types::FormatOptions] :format_options
|
3012
|
+
# Formatting options for the annotation file.
|
3013
|
+
#
|
3014
|
+
# @option params [required, Array<Types::AnnotationImportItemSource>] :items
|
3015
|
+
# Items to import.
|
3016
|
+
#
|
3017
|
+
# @option params [required, String] :role_arn
|
3018
|
+
# A service role for the job.
|
3019
|
+
#
|
3020
|
+
# @option params [Boolean] :run_left_normalization
|
3021
|
+
# The job's left normalization setting.
|
3022
|
+
#
|
3023
|
+
# @return [Types::StartAnnotationImportResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3024
|
+
#
|
3025
|
+
# * {Types::StartAnnotationImportResponse#job_id #job_id} => String
|
3026
|
+
#
|
3027
|
+
# @example Request syntax with placeholder values
|
3028
|
+
#
|
3029
|
+
# resp = client.start_annotation_import_job({
|
3030
|
+
# destination_name: "StoreName", # required
|
3031
|
+
# format_options: {
|
3032
|
+
# tsv_options: {
|
3033
|
+
# read_options: {
|
3034
|
+
# comment: "CommentChar",
|
3035
|
+
# encoding: "Encoding",
|
3036
|
+
# escape: "EscapeChar",
|
3037
|
+
# escape_quotes: false,
|
3038
|
+
# header: false,
|
3039
|
+
# line_sep: "LineSep",
|
3040
|
+
# quote: "Quote",
|
3041
|
+
# quote_all: false,
|
3042
|
+
# sep: "Separator",
|
3043
|
+
# },
|
3044
|
+
# },
|
3045
|
+
# vcf_options: {
|
3046
|
+
# ignore_filter_field: false,
|
3047
|
+
# ignore_qual_field: false,
|
3048
|
+
# },
|
3049
|
+
# },
|
3050
|
+
# items: [ # required
|
3051
|
+
# {
|
3052
|
+
# source: "S3Uri", # required
|
3053
|
+
# },
|
3054
|
+
# ],
|
3055
|
+
# role_arn: "Arn", # required
|
3056
|
+
# run_left_normalization: false,
|
3057
|
+
# })
|
3058
|
+
#
|
3059
|
+
# @example Response structure
|
3060
|
+
#
|
3061
|
+
# resp.job_id #=> String
|
3062
|
+
#
|
3063
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartAnnotationImportJob AWS API Documentation
|
3064
|
+
#
|
3065
|
+
# @overload start_annotation_import_job(params = {})
|
3066
|
+
# @param [Hash] params ({})
|
3067
|
+
def start_annotation_import_job(params = {}, options = {})
|
3068
|
+
req = build_request(:start_annotation_import_job, params)
|
3069
|
+
req.send_request(options)
|
3070
|
+
end
|
3071
|
+
|
3072
|
+
# Starts a read set activation job.
|
3073
|
+
#
|
3074
|
+
# @option params [String] :client_token
|
3075
|
+
# To ensure that jobs don't run multiple times, specify a unique token
|
3076
|
+
# for each job.
|
3077
|
+
#
|
3078
|
+
# @option params [required, String] :sequence_store_id
|
3079
|
+
# The read set's sequence store ID.
|
3080
|
+
#
|
3081
|
+
# @option params [required, Array<Types::StartReadSetActivationJobSourceItem>] :sources
|
3082
|
+
# The job's sources.
|
3083
|
+
#
|
3084
|
+
# @return [Types::StartReadSetActivationJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3085
|
+
#
|
3086
|
+
# * {Types::StartReadSetActivationJobResponse#creation_time #creation_time} => Time
|
3087
|
+
# * {Types::StartReadSetActivationJobResponse#id #id} => String
|
3088
|
+
# * {Types::StartReadSetActivationJobResponse#sequence_store_id #sequence_store_id} => String
|
3089
|
+
# * {Types::StartReadSetActivationJobResponse#status #status} => String
|
3090
|
+
#
|
3091
|
+
# @example Request syntax with placeholder values
|
3092
|
+
#
|
3093
|
+
# resp = client.start_read_set_activation_job({
|
3094
|
+
# client_token: "ClientToken",
|
3095
|
+
# sequence_store_id: "SequenceStoreId", # required
|
3096
|
+
# sources: [ # required
|
3097
|
+
# {
|
3098
|
+
# read_set_id: "ReadSetId", # required
|
3099
|
+
# },
|
3100
|
+
# ],
|
3101
|
+
# })
|
3102
|
+
#
|
3103
|
+
# @example Response structure
|
3104
|
+
#
|
3105
|
+
# resp.creation_time #=> Time
|
3106
|
+
# resp.id #=> String
|
3107
|
+
# resp.sequence_store_id #=> String
|
3108
|
+
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
3109
|
+
#
|
3110
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetActivationJob AWS API Documentation
|
3111
|
+
#
|
3112
|
+
# @overload start_read_set_activation_job(params = {})
|
3113
|
+
# @param [Hash] params ({})
|
3114
|
+
def start_read_set_activation_job(params = {}, options = {})
|
3115
|
+
req = build_request(:start_read_set_activation_job, params)
|
3116
|
+
req.send_request(options)
|
3117
|
+
end
|
3118
|
+
|
3119
|
+
# Starts a read set export job.
|
3120
|
+
#
|
3121
|
+
# @option params [String] :client_token
|
3122
|
+
# To ensure that jobs don't run multiple times, specify a unique token
|
3123
|
+
# for each job.
|
3124
|
+
#
|
3125
|
+
# @option params [required, String] :destination
|
3126
|
+
# A location for exported files in Amazon S3.
|
3127
|
+
#
|
3128
|
+
# @option params [required, String] :role_arn
|
3129
|
+
# A service role for the job.
|
3130
|
+
#
|
3131
|
+
# @option params [required, String] :sequence_store_id
|
3132
|
+
# The read set's sequence store ID.
|
3133
|
+
#
|
3134
|
+
# @option params [required, Array<Types::ExportReadSet>] :sources
|
3135
|
+
# Sources for the job.
|
3136
|
+
#
|
3137
|
+
# @return [Types::StartReadSetExportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3138
|
+
#
|
3139
|
+
# * {Types::StartReadSetExportJobResponse#creation_time #creation_time} => Time
|
3140
|
+
# * {Types::StartReadSetExportJobResponse#destination #destination} => String
|
3141
|
+
# * {Types::StartReadSetExportJobResponse#id #id} => String
|
3142
|
+
# * {Types::StartReadSetExportJobResponse#sequence_store_id #sequence_store_id} => String
|
3143
|
+
# * {Types::StartReadSetExportJobResponse#status #status} => String
|
3144
|
+
#
|
3145
|
+
# @example Request syntax with placeholder values
|
3146
|
+
#
|
3147
|
+
# resp = client.start_read_set_export_job({
|
3148
|
+
# client_token: "ClientToken",
|
3149
|
+
# destination: "S3Destination", # required
|
3150
|
+
# role_arn: "RoleArn", # required
|
3151
|
+
# sequence_store_id: "SequenceStoreId", # required
|
3152
|
+
# sources: [ # required
|
3153
|
+
# {
|
3154
|
+
# read_set_id: "ReadSetId", # required
|
3155
|
+
# },
|
3156
|
+
# ],
|
3157
|
+
# })
|
3158
|
+
#
|
3159
|
+
# @example Response structure
|
3160
|
+
#
|
3161
|
+
# resp.creation_time #=> Time
|
3162
|
+
# resp.destination #=> String
|
3163
|
+
# resp.id #=> String
|
3164
|
+
# resp.sequence_store_id #=> String
|
3165
|
+
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
3166
|
+
#
|
3167
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetExportJob AWS API Documentation
|
3168
|
+
#
|
3169
|
+
# @overload start_read_set_export_job(params = {})
|
3170
|
+
# @param [Hash] params ({})
|
3171
|
+
def start_read_set_export_job(params = {}, options = {})
|
3172
|
+
req = build_request(:start_read_set_export_job, params)
|
3173
|
+
req.send_request(options)
|
3174
|
+
end
|
3175
|
+
|
3176
|
+
# Starts a read set import job.
|
3177
|
+
#
|
3178
|
+
# @option params [String] :client_token
|
3179
|
+
# To ensure that jobs don't run multiple times, specify a unique token
|
3180
|
+
# for each job.
|
3181
|
+
#
|
3182
|
+
# @option params [required, String] :role_arn
|
3183
|
+
# A service role for the job.
|
3184
|
+
#
|
3185
|
+
# @option params [required, String] :sequence_store_id
|
3186
|
+
# The read set's sequence store ID.
|
3187
|
+
#
|
3188
|
+
# @option params [required, Array<Types::StartReadSetImportJobSourceItem>] :sources
|
3189
|
+
# Source files to import.
|
3190
|
+
#
|
3191
|
+
# @return [Types::StartReadSetImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3192
|
+
#
|
3193
|
+
# * {Types::StartReadSetImportJobResponse#creation_time #creation_time} => Time
|
3194
|
+
# * {Types::StartReadSetImportJobResponse#id #id} => String
|
3195
|
+
# * {Types::StartReadSetImportJobResponse#role_arn #role_arn} => String
|
3196
|
+
# * {Types::StartReadSetImportJobResponse#sequence_store_id #sequence_store_id} => String
|
3197
|
+
# * {Types::StartReadSetImportJobResponse#status #status} => String
|
3198
|
+
#
|
3199
|
+
# @example Request syntax with placeholder values
|
3200
|
+
#
|
3201
|
+
# resp = client.start_read_set_import_job({
|
3202
|
+
# client_token: "ClientToken",
|
3203
|
+
# role_arn: "RoleArn", # required
|
3204
|
+
# sequence_store_id: "SequenceStoreId", # required
|
3205
|
+
# sources: [ # required
|
3206
|
+
# {
|
3207
|
+
# description: "ReadSetDescription",
|
3208
|
+
# generated_from: "GeneratedFrom",
|
3209
|
+
# name: "ReadSetName",
|
3210
|
+
# reference_arn: "ReferenceArn", # required
|
3211
|
+
# sample_id: "SampleId", # required
|
3212
|
+
# source_file_type: "FASTQ", # required, accepts FASTQ, BAM, CRAM
|
3213
|
+
# source_files: { # required
|
3214
|
+
# source1: "S3Uri", # required
|
3215
|
+
# source2: "S3Uri",
|
3216
|
+
# },
|
3217
|
+
# subject_id: "SubjectId", # required
|
3218
|
+
# tags: {
|
3219
|
+
# "TagKey" => "TagValue",
|
3220
|
+
# },
|
3221
|
+
# },
|
3222
|
+
# ],
|
3223
|
+
# })
|
3224
|
+
#
|
3225
|
+
# @example Response structure
|
3226
|
+
#
|
3227
|
+
# resp.creation_time #=> Time
|
3228
|
+
# resp.id #=> String
|
3229
|
+
# resp.role_arn #=> String
|
3230
|
+
# resp.sequence_store_id #=> String
|
3231
|
+
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
3232
|
+
#
|
3233
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetImportJob AWS API Documentation
|
3234
|
+
#
|
3235
|
+
# @overload start_read_set_import_job(params = {})
|
3236
|
+
# @param [Hash] params ({})
|
3237
|
+
def start_read_set_import_job(params = {}, options = {})
|
3238
|
+
req = build_request(:start_read_set_import_job, params)
|
3239
|
+
req.send_request(options)
|
3240
|
+
end
|
3241
|
+
|
3242
|
+
# Starts a reference import job.
|
3243
|
+
#
|
3244
|
+
# @option params [String] :client_token
|
3245
|
+
# To ensure that jobs don't run multiple times, specify a unique token
|
3246
|
+
# for each job.
|
3247
|
+
#
|
3248
|
+
# @option params [required, String] :reference_store_id
|
3249
|
+
# The job's reference store ID.
|
3250
|
+
#
|
3251
|
+
# @option params [required, String] :role_arn
|
3252
|
+
# A service role for the job.
|
3253
|
+
#
|
3254
|
+
# @option params [required, Array<Types::StartReferenceImportJobSourceItem>] :sources
|
3255
|
+
# Sources for the job.
|
3256
|
+
#
|
3257
|
+
# @return [Types::StartReferenceImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3258
|
+
#
|
3259
|
+
# * {Types::StartReferenceImportJobResponse#creation_time #creation_time} => Time
|
3260
|
+
# * {Types::StartReferenceImportJobResponse#id #id} => String
|
3261
|
+
# * {Types::StartReferenceImportJobResponse#reference_store_id #reference_store_id} => String
|
3262
|
+
# * {Types::StartReferenceImportJobResponse#role_arn #role_arn} => String
|
3263
|
+
# * {Types::StartReferenceImportJobResponse#status #status} => String
|
3264
|
+
#
|
3265
|
+
# @example Request syntax with placeholder values
|
3266
|
+
#
|
3267
|
+
# resp = client.start_reference_import_job({
|
3268
|
+
# client_token: "ClientToken",
|
3269
|
+
# reference_store_id: "ReferenceStoreId", # required
|
3270
|
+
# role_arn: "RoleArn", # required
|
3271
|
+
# sources: [ # required
|
3272
|
+
# {
|
3273
|
+
# description: "ReferenceDescription",
|
3274
|
+
# name: "ReferenceName", # required
|
3275
|
+
# source_file: "S3Uri", # required
|
3276
|
+
# tags: {
|
3277
|
+
# "TagKey" => "TagValue",
|
3278
|
+
# },
|
3279
|
+
# },
|
3280
|
+
# ],
|
3281
|
+
# })
|
3282
|
+
#
|
3283
|
+
# @example Response structure
|
3284
|
+
#
|
3285
|
+
# resp.creation_time #=> Time
|
3286
|
+
# resp.id #=> String
|
3287
|
+
# resp.reference_store_id #=> String
|
3288
|
+
# resp.role_arn #=> String
|
3289
|
+
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
3290
|
+
#
|
3291
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReferenceImportJob AWS API Documentation
|
3292
|
+
#
|
3293
|
+
# @overload start_reference_import_job(params = {})
|
3294
|
+
# @param [Hash] params ({})
|
3295
|
+
def start_reference_import_job(params = {}, options = {})
|
3296
|
+
req = build_request(:start_reference_import_job, params)
|
3297
|
+
req.send_request(options)
|
3298
|
+
end
|
3299
|
+
|
3300
|
+
# Starts a run.
|
3301
|
+
#
|
3302
|
+
# @option params [String] :log_level
|
3303
|
+
# A log level for the run.
|
3304
|
+
#
|
3305
|
+
# @option params [String] :name
|
3306
|
+
# A name for the run.
|
3307
|
+
#
|
3308
|
+
# @option params [String] :output_uri
|
3309
|
+
# An output URI for the run.
|
3310
|
+
#
|
3311
|
+
# @option params [Hash,Array,String,Numeric,Boolean] :parameters
|
3312
|
+
# Parameters for the run.
|
3313
|
+
#
|
3314
|
+
# Document type used to carry open content
|
3315
|
+
# (Hash,Array,String,Numeric,Boolean). A document type value is
|
3316
|
+
# serialized using the same format as its surroundings and requires no
|
3317
|
+
# additional encoding or escaping.
|
3318
|
+
#
|
3319
|
+
# @option params [Integer] :priority
|
3320
|
+
# A priority for the run.
|
3321
|
+
#
|
3322
|
+
# @option params [required, String] :request_id
|
3323
|
+
# A request ID for the run.
|
3324
|
+
#
|
3325
|
+
# **A suitable default value is auto-generated.** You should normally
|
3326
|
+
# not need to pass this option.**
|
3327
|
+
#
|
3328
|
+
# @option params [required, String] :role_arn
|
3329
|
+
# A service role for the run.
|
3330
|
+
#
|
3331
|
+
# @option params [String] :run_group_id
|
3332
|
+
# The run's group ID.
|
3333
|
+
#
|
3334
|
+
# @option params [String] :run_id
|
3335
|
+
# The run's ID.
|
3336
|
+
#
|
3337
|
+
# @option params [Integer] :storage_capacity
|
3338
|
+
# A storage capacity for the run.
|
3339
|
+
#
|
3340
|
+
# @option params [Hash<String,String>] :tags
|
3341
|
+
# Tags for the run.
|
3342
|
+
#
|
3343
|
+
# @option params [String] :workflow_id
|
3344
|
+
# The run's workflow ID.
|
3345
|
+
#
|
3346
|
+
# @option params [String] :workflow_type
|
3347
|
+
# The run's workflows type.
|
3348
|
+
#
|
3349
|
+
# @return [Types::StartRunResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3350
|
+
#
|
3351
|
+
# * {Types::StartRunResponse#arn #arn} => String
|
3352
|
+
# * {Types::StartRunResponse#id #id} => String
|
3353
|
+
# * {Types::StartRunResponse#status #status} => String
|
3354
|
+
# * {Types::StartRunResponse#tags #tags} => Hash<String,String>
|
3355
|
+
#
|
3356
|
+
# @example Request syntax with placeholder values
|
3357
|
+
#
|
3358
|
+
# resp = client.start_run({
|
3359
|
+
# log_level: "OFF", # accepts OFF, FATAL, ERROR, ALL
|
3360
|
+
# name: "RunName",
|
3361
|
+
# output_uri: "RunOutputUri",
|
3362
|
+
# parameters: {
|
3363
|
+
# },
|
3364
|
+
# priority: 1,
|
3365
|
+
# request_id: "RunRequestId", # required
|
3366
|
+
# role_arn: "RunRoleArn", # required
|
3367
|
+
# run_group_id: "RunGroupId",
|
3368
|
+
# run_id: "RunId",
|
3369
|
+
# storage_capacity: 1,
|
3370
|
+
# tags: {
|
3371
|
+
# "TagKey" => "TagValue",
|
3372
|
+
# },
|
3373
|
+
# workflow_id: "WorkflowId",
|
3374
|
+
# workflow_type: "PRIVATE", # accepts PRIVATE
|
3375
|
+
# })
|
3376
|
+
#
|
3377
|
+
# @example Response structure
|
3378
|
+
#
|
3379
|
+
# resp.arn #=> String
|
3380
|
+
# resp.id #=> String
|
3381
|
+
# resp.status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "DELETED", "CANCELLED", "FAILED"
|
3382
|
+
# resp.tags #=> Hash
|
3383
|
+
# resp.tags["TagKey"] #=> String
|
3384
|
+
#
|
3385
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartRun AWS API Documentation
|
3386
|
+
#
|
3387
|
+
# @overload start_run(params = {})
|
3388
|
+
# @param [Hash] params ({})
|
3389
|
+
def start_run(params = {}, options = {})
|
3390
|
+
req = build_request(:start_run, params)
|
3391
|
+
req.send_request(options)
|
3392
|
+
end
|
3393
|
+
|
3394
|
+
# Starts a variant import job.
|
3395
|
+
#
|
3396
|
+
# @option params [required, String] :destination_name
|
3397
|
+
# The destination variant store for the job.
|
3398
|
+
#
|
3399
|
+
# @option params [required, Array<Types::VariantImportItemSource>] :items
|
3400
|
+
# Items to import.
|
3401
|
+
#
|
3402
|
+
# @option params [required, String] :role_arn
|
3403
|
+
# A service role for the job.
|
3404
|
+
#
|
3405
|
+
# @option params [Boolean] :run_left_normalization
|
3406
|
+
# The job's left normalization setting.
|
3407
|
+
#
|
3408
|
+
# @return [Types::StartVariantImportResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3409
|
+
#
|
3410
|
+
# * {Types::StartVariantImportResponse#job_id #job_id} => String
|
3411
|
+
#
|
3412
|
+
# @example Request syntax with placeholder values
|
3413
|
+
#
|
3414
|
+
# resp = client.start_variant_import_job({
|
3415
|
+
# destination_name: "StoreName", # required
|
3416
|
+
# items: [ # required
|
3417
|
+
# {
|
3418
|
+
# source: "S3Uri", # required
|
3419
|
+
# },
|
3420
|
+
# ],
|
3421
|
+
# role_arn: "Arn", # required
|
3422
|
+
# run_left_normalization: false,
|
3423
|
+
# })
|
3424
|
+
#
|
3425
|
+
# @example Response structure
|
3426
|
+
#
|
3427
|
+
# resp.job_id #=> String
|
3428
|
+
#
|
3429
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartVariantImportJob AWS API Documentation
|
3430
|
+
#
|
3431
|
+
# @overload start_variant_import_job(params = {})
|
3432
|
+
# @param [Hash] params ({})
|
3433
|
+
def start_variant_import_job(params = {}, options = {})
|
3434
|
+
req = build_request(:start_variant_import_job, params)
|
3435
|
+
req.send_request(options)
|
3436
|
+
end
|
3437
|
+
|
3438
|
+
# Tags a resource.
|
3439
|
+
#
|
3440
|
+
# @option params [required, String] :resource_arn
|
3441
|
+
# The resource's ARN.
|
3442
|
+
#
|
3443
|
+
# @option params [required, Hash<String,String>] :tags
|
3444
|
+
# Tags for the resource.
|
3445
|
+
#
|
3446
|
+
# @return [Struct] Returns an empty {Seahorse::Client::Response response}.
|
3447
|
+
#
|
3448
|
+
# @example Request syntax with placeholder values
|
3449
|
+
#
|
3450
|
+
# resp = client.tag_resource({
|
3451
|
+
# resource_arn: "TagArn", # required
|
3452
|
+
# tags: { # required
|
3453
|
+
# "TagKey" => "TagValue",
|
3454
|
+
# },
|
3455
|
+
# })
|
3456
|
+
#
|
3457
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/TagResource AWS API Documentation
|
3458
|
+
#
|
3459
|
+
# @overload tag_resource(params = {})
|
3460
|
+
# @param [Hash] params ({})
|
3461
|
+
def tag_resource(params = {}, options = {})
|
3462
|
+
req = build_request(:tag_resource, params)
|
3463
|
+
req.send_request(options)
|
3464
|
+
end
|
3465
|
+
|
3466
|
+
# Removes tags from a resource.
|
3467
|
+
#
|
3468
|
+
# @option params [required, String] :resource_arn
|
3469
|
+
# The resource's ARN.
|
3470
|
+
#
|
3471
|
+
# @option params [required, Array<String>] :tag_keys
|
3472
|
+
# Keys of tags to remove.
|
3473
|
+
#
|
3474
|
+
# @return [Struct] Returns an empty {Seahorse::Client::Response response}.
|
3475
|
+
#
|
3476
|
+
# @example Request syntax with placeholder values
|
3477
|
+
#
|
3478
|
+
# resp = client.untag_resource({
|
3479
|
+
# resource_arn: "TagArn", # required
|
3480
|
+
# tag_keys: ["TagKey"], # required
|
3481
|
+
# })
|
3482
|
+
#
|
3483
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UntagResource AWS API Documentation
|
3484
|
+
#
|
3485
|
+
# @overload untag_resource(params = {})
|
3486
|
+
# @param [Hash] params ({})
|
3487
|
+
def untag_resource(params = {}, options = {})
|
3488
|
+
req = build_request(:untag_resource, params)
|
3489
|
+
req.send_request(options)
|
3490
|
+
end
|
3491
|
+
|
3492
|
+
# Updates an annotation store.
|
3493
|
+
#
|
3494
|
+
# @option params [String] :description
|
3495
|
+
# A description for the store.
|
3496
|
+
#
|
3497
|
+
# @option params [required, String] :name
|
3498
|
+
# A name for the store.
|
3499
|
+
#
|
3500
|
+
# @return [Types::UpdateAnnotationStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3501
|
+
#
|
3502
|
+
# * {Types::UpdateAnnotationStoreResponse#creation_time #creation_time} => Time
|
3503
|
+
# * {Types::UpdateAnnotationStoreResponse#description #description} => String
|
3504
|
+
# * {Types::UpdateAnnotationStoreResponse#id #id} => String
|
3505
|
+
# * {Types::UpdateAnnotationStoreResponse#name #name} => String
|
3506
|
+
# * {Types::UpdateAnnotationStoreResponse#reference #reference} => Types::ReferenceItem
|
3507
|
+
# * {Types::UpdateAnnotationStoreResponse#status #status} => String
|
3508
|
+
# * {Types::UpdateAnnotationStoreResponse#store_format #store_format} => String
|
3509
|
+
# * {Types::UpdateAnnotationStoreResponse#store_options #store_options} => Types::StoreOptions
|
3510
|
+
# * {Types::UpdateAnnotationStoreResponse#update_time #update_time} => Time
|
3511
|
+
#
|
3512
|
+
# @example Request syntax with placeholder values
|
3513
|
+
#
|
3514
|
+
# resp = client.update_annotation_store({
|
3515
|
+
# description: "StoreDescription",
|
3516
|
+
# name: "String", # required
|
3517
|
+
# })
|
3518
|
+
#
|
3519
|
+
# @example Response structure
|
3520
|
+
#
|
3521
|
+
# resp.creation_time #=> Time
|
3522
|
+
# resp.description #=> String
|
3523
|
+
# resp.id #=> String
|
3524
|
+
# resp.name #=> String
|
3525
|
+
# resp.reference.reference_arn #=> String
|
3526
|
+
# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
3527
|
+
# resp.store_format #=> String, one of "GFF", "TSV", "VCF"
|
3528
|
+
# resp.store_options.tsv_store_options.annotation_type #=> String, one of "GENERIC", "CHR_POS", "CHR_POS_REF_ALT", "CHR_START_END_ONE_BASE", "CHR_START_END_REF_ALT_ONE_BASE", "CHR_START_END_ZERO_BASE", "CHR_START_END_REF_ALT_ZERO_BASE"
|
3529
|
+
# resp.store_options.tsv_store_options.format_to_header #=> Hash
|
3530
|
+
# resp.store_options.tsv_store_options.format_to_header["FormatToHeaderKey"] #=> String
|
3531
|
+
# resp.store_options.tsv_store_options.schema #=> Array
|
3532
|
+
# resp.store_options.tsv_store_options.schema[0] #=> Hash
|
3533
|
+
# resp.store_options.tsv_store_options.schema[0]["String"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN"
|
3534
|
+
# resp.update_time #=> Time
|
3535
|
+
#
|
3536
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateAnnotationStore AWS API Documentation
|
3537
|
+
#
|
3538
|
+
# @overload update_annotation_store(params = {})
|
3539
|
+
# @param [Hash] params ({})
|
3540
|
+
def update_annotation_store(params = {}, options = {})
|
3541
|
+
req = build_request(:update_annotation_store, params)
|
3542
|
+
req.send_request(options)
|
3543
|
+
end
|
3544
|
+
|
3545
|
+
# Updates a run group.
|
3546
|
+
#
|
3547
|
+
# @option params [required, String] :id
|
3548
|
+
# The group's ID.
|
3549
|
+
#
|
3550
|
+
# @option params [Integer] :max_cpus
|
3551
|
+
# The maximum number of CPUs to use.
|
3552
|
+
#
|
3553
|
+
# @option params [Integer] :max_duration
|
3554
|
+
# The maximum amount of time to run.
|
3555
|
+
#
|
3556
|
+
# @option params [Integer] :max_runs
|
3557
|
+
# The maximum number of concurrent runs for the group.
|
3558
|
+
#
|
3559
|
+
# @option params [String] :name
|
3560
|
+
# A name for the group.
|
3561
|
+
#
|
3562
|
+
# @return [Struct] Returns an empty {Seahorse::Client::Response response}.
|
3563
|
+
#
|
3564
|
+
# @example Request syntax with placeholder values
|
3565
|
+
#
|
3566
|
+
# resp = client.update_run_group({
|
3567
|
+
# id: "RunGroupId", # required
|
3568
|
+
# max_cpus: 1,
|
3569
|
+
# max_duration: 1,
|
3570
|
+
# max_runs: 1,
|
3571
|
+
# name: "RunGroupName",
|
3572
|
+
# })
|
3573
|
+
#
|
3574
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateRunGroup AWS API Documentation
|
3575
|
+
#
|
3576
|
+
# @overload update_run_group(params = {})
|
3577
|
+
# @param [Hash] params ({})
|
3578
|
+
def update_run_group(params = {}, options = {})
|
3579
|
+
req = build_request(:update_run_group, params)
|
3580
|
+
req.send_request(options)
|
3581
|
+
end
|
3582
|
+
|
3583
|
+
# Updates a variant store.
|
3584
|
+
#
|
3585
|
+
# @option params [String] :description
|
3586
|
+
# A description for the store.
|
3587
|
+
#
|
3588
|
+
# @option params [required, String] :name
|
3589
|
+
# A name for the store.
|
3590
|
+
#
|
3591
|
+
# @return [Types::UpdateVariantStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3592
|
+
#
|
3593
|
+
# * {Types::UpdateVariantStoreResponse#creation_time #creation_time} => Time
|
3594
|
+
# * {Types::UpdateVariantStoreResponse#description #description} => String
|
3595
|
+
# * {Types::UpdateVariantStoreResponse#id #id} => String
|
3596
|
+
# * {Types::UpdateVariantStoreResponse#name #name} => String
|
3597
|
+
# * {Types::UpdateVariantStoreResponse#reference #reference} => Types::ReferenceItem
|
3598
|
+
# * {Types::UpdateVariantStoreResponse#status #status} => String
|
3599
|
+
# * {Types::UpdateVariantStoreResponse#update_time #update_time} => Time
|
3600
|
+
#
|
3601
|
+
# @example Request syntax with placeholder values
|
3602
|
+
#
|
3603
|
+
# resp = client.update_variant_store({
|
3604
|
+
# description: "StoreDescription",
|
3605
|
+
# name: "String", # required
|
3606
|
+
# })
|
3607
|
+
#
|
3608
|
+
# @example Response structure
|
3609
|
+
#
|
3610
|
+
# resp.creation_time #=> Time
|
3611
|
+
# resp.description #=> String
|
3612
|
+
# resp.id #=> String
|
3613
|
+
# resp.name #=> String
|
3614
|
+
# resp.reference.reference_arn #=> String
|
3615
|
+
# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
3616
|
+
# resp.update_time #=> Time
|
3617
|
+
#
|
3618
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateVariantStore AWS API Documentation
|
3619
|
+
#
|
3620
|
+
# @overload update_variant_store(params = {})
|
3621
|
+
# @param [Hash] params ({})
|
3622
|
+
def update_variant_store(params = {}, options = {})
|
3623
|
+
req = build_request(:update_variant_store, params)
|
3624
|
+
req.send_request(options)
|
3625
|
+
end
|
3626
|
+
|
3627
|
+
# Updates a workflow.
|
3628
|
+
#
|
3629
|
+
# @option params [String] :description
|
3630
|
+
# A description for the workflow.
|
3631
|
+
#
|
3632
|
+
# @option params [required, String] :id
|
3633
|
+
# The workflow's ID.
|
3634
|
+
#
|
3635
|
+
# @option params [String] :name
|
3636
|
+
# A name for the workflow.
|
3637
|
+
#
|
3638
|
+
# @return [Struct] Returns an empty {Seahorse::Client::Response response}.
|
3639
|
+
#
|
3640
|
+
# @example Request syntax with placeholder values
|
3641
|
+
#
|
3642
|
+
# resp = client.update_workflow({
|
3643
|
+
# description: "WorkflowDescription",
|
3644
|
+
# id: "WorkflowId", # required
|
3645
|
+
# name: "WorkflowName",
|
3646
|
+
# })
|
3647
|
+
#
|
3648
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateWorkflow AWS API Documentation
|
3649
|
+
#
|
3650
|
+
# @overload update_workflow(params = {})
|
3651
|
+
# @param [Hash] params ({})
|
3652
|
+
def update_workflow(params = {}, options = {})
|
3653
|
+
req = build_request(:update_workflow, params)
|
3654
|
+
req.send_request(options)
|
3655
|
+
end
|
3656
|
+
|
3657
|
+
# @!endgroup
|
3658
|
+
|
3659
|
+
# @param params ({})
|
3660
|
+
# @api private
|
3661
|
+
def build_request(operation_name, params = {})
|
3662
|
+
handlers = @handlers.for(operation_name)
|
3663
|
+
context = Seahorse::Client::RequestContext.new(
|
3664
|
+
operation_name: operation_name,
|
3665
|
+
operation: config.api.operation(operation_name),
|
3666
|
+
client: self,
|
3667
|
+
params: params,
|
3668
|
+
config: config)
|
3669
|
+
context[:gem_name] = 'aws-sdk-omics'
|
3670
|
+
context[:gem_version] = '1.0.0'
|
3671
|
+
Seahorse::Client::Request.new(handlers, context)
|
3672
|
+
end
|
3673
|
+
|
3674
|
+
# Polls an API operation until a resource enters a desired state.
|
3675
|
+
#
|
3676
|
+
# ## Basic Usage
|
3677
|
+
#
|
3678
|
+
# A waiter will call an API operation until:
|
3679
|
+
#
|
3680
|
+
# * It is successful
|
3681
|
+
# * It enters a terminal state
|
3682
|
+
# * It makes the maximum number of attempts
|
3683
|
+
#
|
3684
|
+
# In between attempts, the waiter will sleep.
|
3685
|
+
#
|
3686
|
+
# # polls in a loop, sleeping between attempts
|
3687
|
+
# client.wait_until(waiter_name, params)
|
3688
|
+
#
|
3689
|
+
# ## Configuration
|
3690
|
+
#
|
3691
|
+
# You can configure the maximum number of polling attempts, and the
|
3692
|
+
# delay (in seconds) between each polling attempt. You can pass
|
3693
|
+
# configuration as the final arguments hash.
|
3694
|
+
#
|
3695
|
+
# # poll for ~25 seconds
|
3696
|
+
# client.wait_until(waiter_name, params, {
|
3697
|
+
# max_attempts: 5,
|
3698
|
+
# delay: 5,
|
3699
|
+
# })
|
3700
|
+
#
|
3701
|
+
# ## Callbacks
|
3702
|
+
#
|
3703
|
+
# You can be notified before each polling attempt and before each
|
3704
|
+
# delay. If you throw `:success` or `:failure` from these callbacks,
|
3705
|
+
# it will terminate the waiter.
|
3706
|
+
#
|
3707
|
+
# started_at = Time.now
|
3708
|
+
# client.wait_until(waiter_name, params, {
|
3709
|
+
#
|
3710
|
+
# # disable max attempts
|
3711
|
+
# max_attempts: nil,
|
3712
|
+
#
|
3713
|
+
# # poll for 1 hour, instead of a number of attempts
|
3714
|
+
# before_wait: -> (attempts, response) do
|
3715
|
+
# throw :failure if Time.now - started_at > 3600
|
3716
|
+
# end
|
3717
|
+
# })
|
3718
|
+
#
|
3719
|
+
# ## Handling Errors
|
3720
|
+
#
|
3721
|
+
# When a waiter is unsuccessful, it will raise an error.
|
3722
|
+
# All of the failure errors extend from
|
3723
|
+
# {Aws::Waiters::Errors::WaiterFailed}.
|
3724
|
+
#
|
3725
|
+
# begin
|
3726
|
+
# client.wait_until(...)
|
3727
|
+
# rescue Aws::Waiters::Errors::WaiterFailed
|
3728
|
+
# # resource did not enter the desired state in time
|
3729
|
+
# end
|
3730
|
+
#
|
3731
|
+
# ## Valid Waiters
|
3732
|
+
#
|
3733
|
+
# The following table lists the valid waiter names, the operations they call,
|
3734
|
+
# and the default `:delay` and `:max_attempts` values.
|
3735
|
+
#
|
3736
|
+
# | waiter_name | params | :delay | :max_attempts |
|
3737
|
+
# | --------------------------------- | ------------------------------------ | -------- | ------------- |
|
3738
|
+
# | annotation_import_job_created | {Client#get_annotation_import_job} | 30 | 20 |
|
3739
|
+
# | annotation_store_created | {Client#get_annotation_store} | 30 | 20 |
|
3740
|
+
# | annotation_store_deleted | {Client#get_annotation_store} | 30 | 20 |
|
3741
|
+
# | read_set_activation_job_completed | {Client#get_read_set_activation_job} | 30 | 20 |
|
3742
|
+
# | read_set_export_job_completed | {Client#get_read_set_export_job} | 30 | 20 |
|
3743
|
+
# | read_set_import_job_completed | {Client#get_read_set_import_job} | 30 | 20 |
|
3744
|
+
# | reference_import_job_completed | {Client#get_reference_import_job} | 30 | 20 |
|
3745
|
+
# | run_completed | {Client#get_run} | 30 | 20 |
|
3746
|
+
# | run_running | {Client#get_run} | 30 | 20 |
|
3747
|
+
# | task_completed | {Client#get_run_task} | 30 | 20 |
|
3748
|
+
# | task_running | {Client#get_run_task} | 30 | 20 |
|
3749
|
+
# | variant_import_job_created | {Client#get_variant_import_job} | 30 | 20 |
|
3750
|
+
# | variant_store_created | {Client#get_variant_store} | 30 | 20 |
|
3751
|
+
# | variant_store_deleted | {Client#get_variant_store} | 30 | 20 |
|
3752
|
+
# | workflow_active | {Client#get_workflow} | 3 | 10 |
|
3753
|
+
#
|
3754
|
+
# @raise [Errors::FailureStateError] Raised when the waiter terminates
|
3755
|
+
# because the waiter has entered a state that it will not transition
|
3756
|
+
# out of, preventing success.
|
3757
|
+
#
|
3758
|
+
# @raise [Errors::TooManyAttemptsError] Raised when the configured
|
3759
|
+
# maximum number of attempts have been made, and the waiter is not
|
3760
|
+
# yet successful.
|
3761
|
+
#
|
3762
|
+
# @raise [Errors::UnexpectedError] Raised when an error is encounted
|
3763
|
+
# while polling for a resource that is not expected.
|
3764
|
+
#
|
3765
|
+
# @raise [Errors::NoSuchWaiterError] Raised when you request to wait
|
3766
|
+
# for an unknown state.
|
3767
|
+
#
|
3768
|
+
# @return [Boolean] Returns `true` if the waiter was successful.
|
3769
|
+
# @param [Symbol] waiter_name
|
3770
|
+
# @param [Hash] params ({})
|
3771
|
+
# @param [Hash] options ({})
|
3772
|
+
# @option options [Integer] :max_attempts
|
3773
|
+
# @option options [Integer] :delay
|
3774
|
+
# @option options [Proc] :before_attempt
|
3775
|
+
# @option options [Proc] :before_wait
|
3776
|
+
def wait_until(waiter_name, params = {}, options = {})
|
3777
|
+
w = waiter(waiter_name, options)
|
3778
|
+
yield(w.waiter) if block_given? # deprecated
|
3779
|
+
w.wait(params)
|
3780
|
+
end
|
3781
|
+
|
3782
|
+
# @api private
|
3783
|
+
# @deprecated
|
3784
|
+
def waiter_names
|
3785
|
+
waiters.keys
|
3786
|
+
end
|
3787
|
+
|
3788
|
+
private
|
3789
|
+
|
3790
|
+
# @param [Symbol] waiter_name
|
3791
|
+
# @param [Hash] options ({})
|
3792
|
+
def waiter(waiter_name, options = {})
|
3793
|
+
waiter_class = waiters[waiter_name]
|
3794
|
+
if waiter_class
|
3795
|
+
waiter_class.new(options.merge(client: self))
|
3796
|
+
else
|
3797
|
+
raise Aws::Waiters::Errors::NoSuchWaiterError.new(waiter_name, waiters.keys)
|
3798
|
+
end
|
3799
|
+
end
|
3800
|
+
|
3801
|
+
def waiters
|
3802
|
+
{
|
3803
|
+
annotation_import_job_created: Waiters::AnnotationImportJobCreated,
|
3804
|
+
annotation_store_created: Waiters::AnnotationStoreCreated,
|
3805
|
+
annotation_store_deleted: Waiters::AnnotationStoreDeleted,
|
3806
|
+
read_set_activation_job_completed: Waiters::ReadSetActivationJobCompleted,
|
3807
|
+
read_set_export_job_completed: Waiters::ReadSetExportJobCompleted,
|
3808
|
+
read_set_import_job_completed: Waiters::ReadSetImportJobCompleted,
|
3809
|
+
reference_import_job_completed: Waiters::ReferenceImportJobCompleted,
|
3810
|
+
run_completed: Waiters::RunCompleted,
|
3811
|
+
run_running: Waiters::RunRunning,
|
3812
|
+
task_completed: Waiters::TaskCompleted,
|
3813
|
+
task_running: Waiters::TaskRunning,
|
3814
|
+
variant_import_job_created: Waiters::VariantImportJobCreated,
|
3815
|
+
variant_store_created: Waiters::VariantStoreCreated,
|
3816
|
+
variant_store_deleted: Waiters::VariantStoreDeleted,
|
3817
|
+
workflow_active: Waiters::WorkflowActive
|
3818
|
+
}
|
3819
|
+
end
|
3820
|
+
|
3821
|
+
class << self
|
3822
|
+
|
3823
|
+
# @api private
|
3824
|
+
attr_reader :identifier
|
3825
|
+
|
3826
|
+
# @api private
|
3827
|
+
def errors_module
|
3828
|
+
Errors
|
3829
|
+
end
|
3830
|
+
|
3831
|
+
end
|
3832
|
+
end
|
3833
|
+
end
|