aws-sdk-omics 1.0.0 → 1.2.0
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- checksums.yaml +4 -4
- data/CHANGELOG.md +12 -0
- data/VERSION +1 -1
- data/lib/aws-sdk-omics/client.rb +40 -35
- data/lib/aws-sdk-omics/client_api.rb +3 -1
- data/lib/aws-sdk-omics/endpoint_parameters.rb +0 -3
- data/lib/aws-sdk-omics/endpoint_provider.rb +38 -94
- data/lib/aws-sdk-omics/types.rb +31 -1022
- data/lib/aws-sdk-omics.rb +1 -1
- metadata +2 -2
data/lib/aws-sdk-omics/types.rb
CHANGED
@@ -25,15 +25,6 @@ module Aws::Omics
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25
25
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26
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# A read set activation job filter.
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27
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#
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28
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-
# @note When making an API call, you may pass ActivateReadSetFilter
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29
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-
# data as a hash:
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30
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-
#
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31
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-
# {
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32
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# created_after: Time.now,
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33
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-
# created_before: Time.now,
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34
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-
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
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35
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-
# }
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-
#
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28
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# @!attribute [rw] created_after
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# The filter's start date.
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# @return [Time]
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@@ -135,13 +126,6 @@ module Aws::Omics
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126
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# A source for an annotation import job.
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#
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-
# @note When making an API call, you may pass AnnotationImportItemSource
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# data as a hash:
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-
#
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-
# {
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# source: "S3Uri", # required
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-
# }
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-
#
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# @!attribute [rw] source
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# The source file's location in Amazon S3.
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# @return [String]
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@@ -272,14 +256,6 @@ module Aws::Omics
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include Aws::Structure
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end
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-
# @note When making an API call, you may pass BatchDeleteReadSetRequest
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-
# data as a hash:
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-
#
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# {
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279
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-
# ids: ["ReadSetId"], # required
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-
# sequence_store_id: "SequenceStoreId", # required
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-
# }
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-
#
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259
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# @!attribute [rw] ids
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# The read sets' IDs.
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# @return [Array<String>]
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@@ -309,13 +285,6 @@ module Aws::Omics
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include Aws::Structure
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end
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-
# @note When making an API call, you may pass CancelAnnotationImportRequest
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-
# data as a hash:
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-
#
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# {
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# job_id: "ResourceId", # required
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-
# }
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-
#
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# @!attribute [rw] job_id
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# The job's ID.
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# @return [String]
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@@ -332,13 +301,6 @@ module Aws::Omics
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#
|
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class CancelAnnotationImportResponse < Aws::EmptyStructure; end
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303
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-
# @note When making an API call, you may pass CancelRunRequest
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-
# data as a hash:
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-
#
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-
# {
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# id: "RunId", # required
|
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-
# }
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-
#
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# @!attribute [rw] id
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# The run's ID.
|
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# @return [String]
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@@ -351,13 +313,6 @@ module Aws::Omics
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include Aws::Structure
|
352
314
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end
|
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315
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354
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-
# @note When making an API call, you may pass CancelVariantImportRequest
|
355
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-
# data as a hash:
|
356
|
-
#
|
357
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-
# {
|
358
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-
# job_id: "ResourceId", # required
|
359
|
-
# }
|
360
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-
#
|
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316
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# @!attribute [rw] job_id
|
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317
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# The job's ID.
|
363
318
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# @return [String]
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@@ -388,38 +343,6 @@ module Aws::Omics
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388
343
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include Aws::Structure
|
389
344
|
end
|
390
345
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|
391
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-
# @note When making an API call, you may pass CreateAnnotationStoreRequest
|
392
|
-
# data as a hash:
|
393
|
-
#
|
394
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-
# {
|
395
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-
# description: "StoreDescription",
|
396
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-
# name: "CreateAnnotationStoreRequestNameString",
|
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# reference: {
|
398
|
-
# reference_arn: "ReferenceArn",
|
399
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-
# },
|
400
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-
# sse_config: {
|
401
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-
# key_arn: "SseConfigKeyArnString",
|
402
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-
# type: "KMS", # required, accepts KMS
|
403
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-
# },
|
404
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-
# store_format: "GFF", # required, accepts GFF, TSV, VCF
|
405
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-
# store_options: {
|
406
|
-
# tsv_store_options: {
|
407
|
-
# annotation_type: "GENERIC", # accepts GENERIC, CHR_POS, CHR_POS_REF_ALT, CHR_START_END_ONE_BASE, CHR_START_END_REF_ALT_ONE_BASE, CHR_START_END_ZERO_BASE, CHR_START_END_REF_ALT_ZERO_BASE
|
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# format_to_header: {
|
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# "CHR" => "FormatToHeaderValueString",
|
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-
# },
|
411
|
-
# schema: [
|
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-
# {
|
413
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-
# "String" => "LONG", # accepts LONG, INT, STRING, FLOAT, DOUBLE, BOOLEAN
|
414
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# },
|
415
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# ],
|
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# },
|
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# },
|
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# tags: {
|
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# "TagKey" => "TagValue",
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# },
|
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# }
|
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-
#
|
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346
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# @!attribute [rw] description
|
424
347
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# A description for the store.
|
425
348
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# @return [String]
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@@ -475,7 +398,8 @@ module Aws::Omics
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475
398
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# @return [String]
|
476
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#
|
477
400
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# @!attribute [rw] reference
|
478
|
-
# The store's genome reference.
|
401
|
+
# The store's genome reference. Required for all stores except TSV
|
402
|
+
# format with generic annotations.
|
479
403
|
# @return [Types::ReferenceItem]
|
480
404
|
#
|
481
405
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# @!attribute [rw] status
|
@@ -504,22 +428,6 @@ module Aws::Omics
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|
504
428
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include Aws::Structure
|
505
429
|
end
|
506
430
|
|
507
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-
# @note When making an API call, you may pass CreateReferenceStoreRequest
|
508
|
-
# data as a hash:
|
509
|
-
#
|
510
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-
# {
|
511
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-
# client_token: "ClientToken",
|
512
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-
# description: "ReferenceStoreDescription",
|
513
|
-
# name: "ReferenceStoreName", # required
|
514
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-
# sse_config: {
|
515
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-
# key_arn: "SseConfigKeyArnString",
|
516
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-
# type: "KMS", # required, accepts KMS
|
517
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-
# },
|
518
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-
# tags: {
|
519
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-
# "TagKey" => "TagValue",
|
520
|
-
# },
|
521
|
-
# }
|
522
|
-
#
|
523
431
|
# @!attribute [rw] client_token
|
524
432
|
# To ensure that requests don't run multiple times, specify a unique
|
525
433
|
# token for each request.
|
@@ -590,26 +498,12 @@ module Aws::Omics
|
|
590
498
|
include Aws::Structure
|
591
499
|
end
|
592
500
|
|
593
|
-
# @note When making an API call, you may pass CreateRunGroupRequest
|
594
|
-
# data as a hash:
|
595
|
-
#
|
596
|
-
# {
|
597
|
-
# max_cpus: 1,
|
598
|
-
# max_duration: 1,
|
599
|
-
# max_runs: 1,
|
600
|
-
# name: "RunGroupName",
|
601
|
-
# request_id: "RunGroupRequestId", # required
|
602
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-
# tags: {
|
603
|
-
# "TagKey" => "TagValue",
|
604
|
-
# },
|
605
|
-
# }
|
606
|
-
#
|
607
501
|
# @!attribute [rw] max_cpus
|
608
502
|
# The maximum number of CPUs to use in the group.
|
609
503
|
# @return [Integer]
|
610
504
|
#
|
611
505
|
# @!attribute [rw] max_duration
|
612
|
-
# A
|
506
|
+
# A maximum run time for the group in minutes.
|
613
507
|
# @return [Integer]
|
614
508
|
#
|
615
509
|
# @!attribute [rw] max_runs
|
@@ -621,7 +515,8 @@ module Aws::Omics
|
|
621
515
|
# @return [String]
|
622
516
|
#
|
623
517
|
# @!attribute [rw] request_id
|
624
|
-
#
|
518
|
+
# To ensure that requests don't run multiple times, specify a unique
|
519
|
+
# ID for each request.
|
625
520
|
#
|
626
521
|
# **A suitable default value is auto-generated.** You should normally
|
627
522
|
# not need to pass this option.
|
@@ -666,22 +561,6 @@ module Aws::Omics
|
|
666
561
|
include Aws::Structure
|
667
562
|
end
|
668
563
|
|
669
|
-
# @note When making an API call, you may pass CreateSequenceStoreRequest
|
670
|
-
# data as a hash:
|
671
|
-
#
|
672
|
-
# {
|
673
|
-
# client_token: "ClientToken",
|
674
|
-
# description: "SequenceStoreDescription",
|
675
|
-
# name: "SequenceStoreName", # required
|
676
|
-
# sse_config: {
|
677
|
-
# key_arn: "SseConfigKeyArnString",
|
678
|
-
# type: "KMS", # required, accepts KMS
|
679
|
-
# },
|
680
|
-
# tags: {
|
681
|
-
# "TagKey" => "TagValue",
|
682
|
-
# },
|
683
|
-
# }
|
684
|
-
#
|
685
564
|
# @!attribute [rw] client_token
|
686
565
|
# To ensure that requests don't run multiple times, specify a unique
|
687
566
|
# token for each request.
|
@@ -752,24 +631,6 @@ module Aws::Omics
|
|
752
631
|
include Aws::Structure
|
753
632
|
end
|
754
633
|
|
755
|
-
# @note When making an API call, you may pass CreateVariantStoreRequest
|
756
|
-
# data as a hash:
|
757
|
-
#
|
758
|
-
# {
|
759
|
-
# description: "StoreDescription",
|
760
|
-
# name: "CreateVariantStoreRequestNameString",
|
761
|
-
# reference: { # required
|
762
|
-
# reference_arn: "ReferenceArn",
|
763
|
-
# },
|
764
|
-
# sse_config: {
|
765
|
-
# key_arn: "SseConfigKeyArnString",
|
766
|
-
# type: "KMS", # required, accepts KMS
|
767
|
-
# },
|
768
|
-
# tags: {
|
769
|
-
# "TagKey" => "TagValue",
|
770
|
-
# },
|
771
|
-
# }
|
772
|
-
#
|
773
634
|
# @!attribute [rw] description
|
774
635
|
# A description for the store.
|
775
636
|
# @return [String]
|
@@ -834,29 +695,6 @@ module Aws::Omics
|
|
834
695
|
include Aws::Structure
|
835
696
|
end
|
836
697
|
|
837
|
-
# @note When making an API call, you may pass CreateWorkflowRequest
|
838
|
-
# data as a hash:
|
839
|
-
#
|
840
|
-
# {
|
841
|
-
# definition_uri: "WorkflowDefinition",
|
842
|
-
# definition_zip: "data",
|
843
|
-
# description: "WorkflowDescription",
|
844
|
-
# engine: "WDL", # accepts WDL, NEXTFLOW
|
845
|
-
# main: "WorkflowMain",
|
846
|
-
# name: "WorkflowName",
|
847
|
-
# parameter_template: {
|
848
|
-
# "WorkflowParameterName" => {
|
849
|
-
# description: "WorkflowParameterDescription",
|
850
|
-
# optional: false,
|
851
|
-
# },
|
852
|
-
# },
|
853
|
-
# request_id: "WorkflowRequestId", # required
|
854
|
-
# storage_capacity: 1,
|
855
|
-
# tags: {
|
856
|
-
# "TagKey" => "TagValue",
|
857
|
-
# },
|
858
|
-
# }
|
859
|
-
#
|
860
698
|
# @!attribute [rw] definition_uri
|
861
699
|
# The URI of a definition for the workflow.
|
862
700
|
# @return [String]
|
@@ -886,14 +724,15 @@ module Aws::Omics
|
|
886
724
|
# @return [Hash<String,Types::WorkflowParameter>]
|
887
725
|
#
|
888
726
|
# @!attribute [rw] request_id
|
889
|
-
#
|
727
|
+
# To ensure that requests don't run multiple times, specify a unique
|
728
|
+
# ID for each request.
|
890
729
|
#
|
891
730
|
# **A suitable default value is auto-generated.** You should normally
|
892
731
|
# not need to pass this option.
|
893
732
|
# @return [String]
|
894
733
|
#
|
895
734
|
# @!attribute [rw] storage_capacity
|
896
|
-
# A storage capacity for the workflow.
|
735
|
+
# A storage capacity for the workflow in gigabytes.
|
897
736
|
# @return [Integer]
|
898
737
|
#
|
899
738
|
# @!attribute [rw] tags
|
@@ -944,14 +783,6 @@ module Aws::Omics
|
|
944
783
|
include Aws::Structure
|
945
784
|
end
|
946
785
|
|
947
|
-
# @note When making an API call, you may pass DeleteAnnotationStoreRequest
|
948
|
-
# data as a hash:
|
949
|
-
#
|
950
|
-
# {
|
951
|
-
# force: false,
|
952
|
-
# name: "String", # required
|
953
|
-
# }
|
954
|
-
#
|
955
786
|
# @!attribute [rw] force
|
956
787
|
# Whether to force deletion.
|
957
788
|
# @return [Boolean]
|
@@ -981,14 +812,6 @@ module Aws::Omics
|
|
981
812
|
include Aws::Structure
|
982
813
|
end
|
983
814
|
|
984
|
-
# @note When making an API call, you may pass DeleteReferenceRequest
|
985
|
-
# data as a hash:
|
986
|
-
#
|
987
|
-
# {
|
988
|
-
# id: "ReferenceId", # required
|
989
|
-
# reference_store_id: "ReferenceStoreId", # required
|
990
|
-
# }
|
991
|
-
#
|
992
815
|
# @!attribute [rw] id
|
993
816
|
# The reference's ID.
|
994
817
|
# @return [String]
|
@@ -1010,13 +833,6 @@ module Aws::Omics
|
|
1010
833
|
#
|
1011
834
|
class DeleteReferenceResponse < Aws::EmptyStructure; end
|
1012
835
|
|
1013
|
-
# @note When making an API call, you may pass DeleteReferenceStoreRequest
|
1014
|
-
# data as a hash:
|
1015
|
-
#
|
1016
|
-
# {
|
1017
|
-
# id: "ReferenceStoreId", # required
|
1018
|
-
# }
|
1019
|
-
#
|
1020
836
|
# @!attribute [rw] id
|
1021
837
|
# The store's ID.
|
1022
838
|
# @return [String]
|
@@ -1033,13 +849,6 @@ module Aws::Omics
|
|
1033
849
|
#
|
1034
850
|
class DeleteReferenceStoreResponse < Aws::EmptyStructure; end
|
1035
851
|
|
1036
|
-
# @note When making an API call, you may pass DeleteRunGroupRequest
|
1037
|
-
# data as a hash:
|
1038
|
-
#
|
1039
|
-
# {
|
1040
|
-
# id: "RunGroupId", # required
|
1041
|
-
# }
|
1042
|
-
#
|
1043
852
|
# @!attribute [rw] id
|
1044
853
|
# The run group's ID.
|
1045
854
|
# @return [String]
|
@@ -1052,13 +861,6 @@ module Aws::Omics
|
|
1052
861
|
include Aws::Structure
|
1053
862
|
end
|
1054
863
|
|
1055
|
-
# @note When making an API call, you may pass DeleteRunRequest
|
1056
|
-
# data as a hash:
|
1057
|
-
#
|
1058
|
-
# {
|
1059
|
-
# id: "RunId", # required
|
1060
|
-
# }
|
1061
|
-
#
|
1062
864
|
# @!attribute [rw] id
|
1063
865
|
# The run's ID.
|
1064
866
|
# @return [String]
|
@@ -1071,13 +873,6 @@ module Aws::Omics
|
|
1071
873
|
include Aws::Structure
|
1072
874
|
end
|
1073
875
|
|
1074
|
-
# @note When making an API call, you may pass DeleteSequenceStoreRequest
|
1075
|
-
# data as a hash:
|
1076
|
-
#
|
1077
|
-
# {
|
1078
|
-
# id: "SequenceStoreId", # required
|
1079
|
-
# }
|
1080
|
-
#
|
1081
876
|
# @!attribute [rw] id
|
1082
877
|
# The sequence store's ID.
|
1083
878
|
# @return [String]
|
@@ -1094,14 +889,6 @@ module Aws::Omics
|
|
1094
889
|
#
|
1095
890
|
class DeleteSequenceStoreResponse < Aws::EmptyStructure; end
|
1096
891
|
|
1097
|
-
# @note When making an API call, you may pass DeleteVariantStoreRequest
|
1098
|
-
# data as a hash:
|
1099
|
-
#
|
1100
|
-
# {
|
1101
|
-
# force: false,
|
1102
|
-
# name: "String", # required
|
1103
|
-
# }
|
1104
|
-
#
|
1105
892
|
# @!attribute [rw] force
|
1106
893
|
# Whether to force deletion.
|
1107
894
|
# @return [Boolean]
|
@@ -1131,13 +918,6 @@ module Aws::Omics
|
|
1131
918
|
include Aws::Structure
|
1132
919
|
end
|
1133
920
|
|
1134
|
-
# @note When making an API call, you may pass DeleteWorkflowRequest
|
1135
|
-
# data as a hash:
|
1136
|
-
#
|
1137
|
-
# {
|
1138
|
-
# id: "WorkflowId", # required
|
1139
|
-
# }
|
1140
|
-
#
|
1141
921
|
# @!attribute [rw] id
|
1142
922
|
# The workflow's ID.
|
1143
923
|
# @return [String]
|
@@ -1152,13 +932,6 @@ module Aws::Omics
|
|
1152
932
|
|
1153
933
|
# A read set.
|
1154
934
|
#
|
1155
|
-
# @note When making an API call, you may pass ExportReadSet
|
1156
|
-
# data as a hash:
|
1157
|
-
#
|
1158
|
-
# {
|
1159
|
-
# read_set_id: "ReadSetId", # required
|
1160
|
-
# }
|
1161
|
-
#
|
1162
935
|
# @!attribute [rw] read_set_id
|
1163
936
|
# The set's ID.
|
1164
937
|
# @return [String]
|
@@ -1197,15 +970,6 @@ module Aws::Omics
|
|
1197
970
|
|
1198
971
|
# An read set export job filter.
|
1199
972
|
#
|
1200
|
-
# @note When making an API call, you may pass ExportReadSetFilter
|
1201
|
-
# data as a hash:
|
1202
|
-
#
|
1203
|
-
# {
|
1204
|
-
# created_after: Time.now,
|
1205
|
-
# created_before: Time.now,
|
1206
|
-
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
1207
|
-
# }
|
1208
|
-
#
|
1209
973
|
# @!attribute [rw] created_after
|
1210
974
|
# The filter's start date.
|
1211
975
|
# @return [Time]
|
@@ -1320,13 +1084,6 @@ module Aws::Omics
|
|
1320
1084
|
class Unknown < FormatOptions; end
|
1321
1085
|
end
|
1322
1086
|
|
1323
|
-
# @note When making an API call, you may pass GetAnnotationImportRequest
|
1324
|
-
# data as a hash:
|
1325
|
-
#
|
1326
|
-
# {
|
1327
|
-
# job_id: "ResourceId", # required
|
1328
|
-
# }
|
1329
|
-
#
|
1330
1087
|
# @!attribute [rw] job_id
|
1331
1088
|
# The job's ID.
|
1332
1089
|
# @return [String]
|
@@ -1401,13 +1158,6 @@ module Aws::Omics
|
|
1401
1158
|
include Aws::Structure
|
1402
1159
|
end
|
1403
1160
|
|
1404
|
-
# @note When making an API call, you may pass GetAnnotationStoreRequest
|
1405
|
-
# data as a hash:
|
1406
|
-
#
|
1407
|
-
# {
|
1408
|
-
# name: "String", # required
|
1409
|
-
# }
|
1410
|
-
#
|
1411
1161
|
# @!attribute [rw] name
|
1412
1162
|
# The store's name.
|
1413
1163
|
# @return [String]
|
@@ -1497,14 +1247,6 @@ module Aws::Omics
|
|
1497
1247
|
include Aws::Structure
|
1498
1248
|
end
|
1499
1249
|
|
1500
|
-
# @note When making an API call, you may pass GetReadSetActivationJobRequest
|
1501
|
-
# data as a hash:
|
1502
|
-
#
|
1503
|
-
# {
|
1504
|
-
# id: "ActivationJobId", # required
|
1505
|
-
# sequence_store_id: "SequenceStoreId", # required
|
1506
|
-
# }
|
1507
|
-
#
|
1508
1250
|
# @!attribute [rw] id
|
1509
1251
|
# The job's ID.
|
1510
1252
|
# @return [String]
|
@@ -1539,7 +1281,7 @@ module Aws::Omics
|
|
1539
1281
|
# @return [String]
|
1540
1282
|
#
|
1541
1283
|
# @!attribute [rw] sources
|
1542
|
-
# The job's
|
1284
|
+
# The job's source files.
|
1543
1285
|
# @return [Array<Types::ActivateReadSetSourceItem>]
|
1544
1286
|
#
|
1545
1287
|
# @!attribute [rw] status
|
@@ -1564,14 +1306,6 @@ module Aws::Omics
|
|
1564
1306
|
include Aws::Structure
|
1565
1307
|
end
|
1566
1308
|
|
1567
|
-
# @note When making an API call, you may pass GetReadSetExportJobRequest
|
1568
|
-
# data as a hash:
|
1569
|
-
#
|
1570
|
-
# {
|
1571
|
-
# id: "ExportJobId", # required
|
1572
|
-
# sequence_store_id: "SequenceStoreId", # required
|
1573
|
-
# }
|
1574
|
-
#
|
1575
1309
|
# @!attribute [rw] id
|
1576
1310
|
# The job's ID.
|
1577
1311
|
# @return [String]
|
@@ -1636,14 +1370,6 @@ module Aws::Omics
|
|
1636
1370
|
include Aws::Structure
|
1637
1371
|
end
|
1638
1372
|
|
1639
|
-
# @note When making an API call, you may pass GetReadSetImportJobRequest
|
1640
|
-
# data as a hash:
|
1641
|
-
#
|
1642
|
-
# {
|
1643
|
-
# id: "ImportJobId", # required
|
1644
|
-
# sequence_store_id: "SequenceStoreId", # required
|
1645
|
-
# }
|
1646
|
-
#
|
1647
1373
|
# @!attribute [rw] id
|
1648
1374
|
# The job's ID.
|
1649
1375
|
# @return [String]
|
@@ -1682,7 +1408,7 @@ module Aws::Omics
|
|
1682
1408
|
# @return [String]
|
1683
1409
|
#
|
1684
1410
|
# @!attribute [rw] sources
|
1685
|
-
# The job's
|
1411
|
+
# The job's source files.
|
1686
1412
|
# @return [Array<Types::ImportReadSetSourceItem>]
|
1687
1413
|
#
|
1688
1414
|
# @!attribute [rw] status
|
@@ -1708,14 +1434,6 @@ module Aws::Omics
|
|
1708
1434
|
include Aws::Structure
|
1709
1435
|
end
|
1710
1436
|
|
1711
|
-
# @note When making an API call, you may pass GetReadSetMetadataRequest
|
1712
|
-
# data as a hash:
|
1713
|
-
#
|
1714
|
-
# {
|
1715
|
-
# id: "ReadSetId", # required
|
1716
|
-
# sequence_store_id: "SequenceStoreId", # required
|
1717
|
-
# }
|
1718
|
-
#
|
1719
1437
|
# @!attribute [rw] id
|
1720
1438
|
# The read set's ID.
|
1721
1439
|
# @return [String]
|
@@ -1805,16 +1523,6 @@ module Aws::Omics
|
|
1805
1523
|
include Aws::Structure
|
1806
1524
|
end
|
1807
1525
|
|
1808
|
-
# @note When making an API call, you may pass GetReadSetRequest
|
1809
|
-
# data as a hash:
|
1810
|
-
#
|
1811
|
-
# {
|
1812
|
-
# file: "SOURCE1", # accepts SOURCE1, SOURCE2, INDEX
|
1813
|
-
# id: "ReadSetId", # required
|
1814
|
-
# part_number: 1, # required
|
1815
|
-
# sequence_store_id: "SequenceStoreId", # required
|
1816
|
-
# }
|
1817
|
-
#
|
1818
1526
|
# @!attribute [rw] file
|
1819
1527
|
# The file to retrieve.
|
1820
1528
|
# @return [String]
|
@@ -1854,14 +1562,6 @@ module Aws::Omics
|
|
1854
1562
|
include Aws::Structure
|
1855
1563
|
end
|
1856
1564
|
|
1857
|
-
# @note When making an API call, you may pass GetReferenceImportJobRequest
|
1858
|
-
# data as a hash:
|
1859
|
-
#
|
1860
|
-
# {
|
1861
|
-
# id: "ImportJobId", # required
|
1862
|
-
# reference_store_id: "ReferenceStoreId", # required
|
1863
|
-
# }
|
1864
|
-
#
|
1865
1565
|
# @!attribute [rw] id
|
1866
1566
|
# The job's ID.
|
1867
1567
|
# @return [String]
|
@@ -1900,7 +1600,7 @@ module Aws::Omics
|
|
1900
1600
|
# @return [String]
|
1901
1601
|
#
|
1902
1602
|
# @!attribute [rw] sources
|
1903
|
-
# The job's
|
1603
|
+
# The job's source files.
|
1904
1604
|
# @return [Array<Types::ImportReferenceSourceItem>]
|
1905
1605
|
#
|
1906
1606
|
# @!attribute [rw] status
|
@@ -1926,14 +1626,6 @@ module Aws::Omics
|
|
1926
1626
|
include Aws::Structure
|
1927
1627
|
end
|
1928
1628
|
|
1929
|
-
# @note When making an API call, you may pass GetReferenceMetadataRequest
|
1930
|
-
# data as a hash:
|
1931
|
-
#
|
1932
|
-
# {
|
1933
|
-
# id: "ReferenceId", # required
|
1934
|
-
# reference_store_id: "ReferenceStoreId", # required
|
1935
|
-
# }
|
1936
|
-
#
|
1937
1629
|
# @!attribute [rw] id
|
1938
1630
|
# The reference's ID.
|
1939
1631
|
# @return [String]
|
@@ -2008,17 +1700,6 @@ module Aws::Omics
|
|
2008
1700
|
include Aws::Structure
|
2009
1701
|
end
|
2010
1702
|
|
2011
|
-
# @note When making an API call, you may pass GetReferenceRequest
|
2012
|
-
# data as a hash:
|
2013
|
-
#
|
2014
|
-
# {
|
2015
|
-
# file: "SOURCE", # accepts SOURCE, INDEX
|
2016
|
-
# id: "ReferenceId", # required
|
2017
|
-
# part_number: 1, # required
|
2018
|
-
# range: "Range",
|
2019
|
-
# reference_store_id: "ReferenceStoreId", # required
|
2020
|
-
# }
|
2021
|
-
#
|
2022
1703
|
# @!attribute [rw] file
|
2023
1704
|
# The file to retrieve.
|
2024
1705
|
# @return [String]
|
@@ -2063,13 +1744,6 @@ module Aws::Omics
|
|
2063
1744
|
include Aws::Structure
|
2064
1745
|
end
|
2065
1746
|
|
2066
|
-
# @note When making an API call, you may pass GetReferenceStoreRequest
|
2067
|
-
# data as a hash:
|
2068
|
-
#
|
2069
|
-
# {
|
2070
|
-
# id: "ReferenceStoreId", # required
|
2071
|
-
# }
|
2072
|
-
#
|
2073
1747
|
# @!attribute [rw] id
|
2074
1748
|
# The store's ID.
|
2075
1749
|
# @return [String]
|
@@ -2119,13 +1793,6 @@ module Aws::Omics
|
|
2119
1793
|
include Aws::Structure
|
2120
1794
|
end
|
2121
1795
|
|
2122
|
-
# @note When making an API call, you may pass GetRunGroupRequest
|
2123
|
-
# data as a hash:
|
2124
|
-
#
|
2125
|
-
# {
|
2126
|
-
# id: "RunGroupId", # required
|
2127
|
-
# }
|
2128
|
-
#
|
2129
1796
|
# @!attribute [rw] id
|
2130
1797
|
# The group's ID.
|
2131
1798
|
# @return [String]
|
@@ -2155,7 +1822,7 @@ module Aws::Omics
|
|
2155
1822
|
# @return [Integer]
|
2156
1823
|
#
|
2157
1824
|
# @!attribute [rw] max_duration
|
2158
|
-
# The group's maximum run
|
1825
|
+
# The group's maximum run time in minutes.
|
2159
1826
|
# @return [Integer]
|
2160
1827
|
#
|
2161
1828
|
# @!attribute [rw] max_runs
|
@@ -2185,14 +1852,6 @@ module Aws::Omics
|
|
2185
1852
|
include Aws::Structure
|
2186
1853
|
end
|
2187
1854
|
|
2188
|
-
# @note When making an API call, you may pass GetRunRequest
|
2189
|
-
# data as a hash:
|
2190
|
-
#
|
2191
|
-
# {
|
2192
|
-
# export: ["DEFINITION"], # accepts DEFINITION
|
2193
|
-
# id: "RunId", # required
|
2194
|
-
# }
|
2195
|
-
#
|
2196
1855
|
# @!attribute [rw] export
|
2197
1856
|
# The run's export format.
|
2198
1857
|
# @return [Array<String>]
|
@@ -2287,7 +1946,7 @@ module Aws::Omics
|
|
2287
1946
|
# @return [Time]
|
2288
1947
|
#
|
2289
1948
|
# @!attribute [rw] storage_capacity
|
2290
|
-
# The run's storage capacity.
|
1949
|
+
# The run's storage capacity in gigabytes.
|
2291
1950
|
# @return [Integer]
|
2292
1951
|
#
|
2293
1952
|
# @!attribute [rw] tags
|
@@ -2332,14 +1991,6 @@ module Aws::Omics
|
|
2332
1991
|
include Aws::Structure
|
2333
1992
|
end
|
2334
1993
|
|
2335
|
-
# @note When making an API call, you may pass GetRunTaskRequest
|
2336
|
-
# data as a hash:
|
2337
|
-
#
|
2338
|
-
# {
|
2339
|
-
# id: "RunId", # required
|
2340
|
-
# task_id: "TaskId", # required
|
2341
|
-
# }
|
2342
|
-
#
|
2343
1994
|
# @!attribute [rw] id
|
2344
1995
|
# The task's ID.
|
2345
1996
|
# @return [String]
|
@@ -2370,7 +2021,7 @@ module Aws::Omics
|
|
2370
2021
|
# @return [String]
|
2371
2022
|
#
|
2372
2023
|
# @!attribute [rw] memory
|
2373
|
-
# The task's memory
|
2024
|
+
# The task's memory use in gigabytes.
|
2374
2025
|
# @return [Integer]
|
2375
2026
|
#
|
2376
2027
|
# @!attribute [rw] name
|
@@ -2414,13 +2065,6 @@ module Aws::Omics
|
|
2414
2065
|
include Aws::Structure
|
2415
2066
|
end
|
2416
2067
|
|
2417
|
-
# @note When making an API call, you may pass GetSequenceStoreRequest
|
2418
|
-
# data as a hash:
|
2419
|
-
#
|
2420
|
-
# {
|
2421
|
-
# id: "SequenceStoreId", # required
|
2422
|
-
# }
|
2423
|
-
#
|
2424
2068
|
# @!attribute [rw] id
|
2425
2069
|
# The store's ID.
|
2426
2070
|
# @return [String]
|
@@ -2470,13 +2114,6 @@ module Aws::Omics
|
|
2470
2114
|
include Aws::Structure
|
2471
2115
|
end
|
2472
2116
|
|
2473
|
-
# @note When making an API call, you may pass GetVariantImportRequest
|
2474
|
-
# data as a hash:
|
2475
|
-
#
|
2476
|
-
# {
|
2477
|
-
# job_id: "ResourceId", # required
|
2478
|
-
# }
|
2479
|
-
#
|
2480
2117
|
# @!attribute [rw] job_id
|
2481
2118
|
# The job's ID.
|
2482
2119
|
# @return [String]
|
@@ -2546,13 +2183,6 @@ module Aws::Omics
|
|
2546
2183
|
include Aws::Structure
|
2547
2184
|
end
|
2548
2185
|
|
2549
|
-
# @note When making an API call, you may pass GetVariantStoreRequest
|
2550
|
-
# data as a hash:
|
2551
|
-
#
|
2552
|
-
# {
|
2553
|
-
# name: "String", # required
|
2554
|
-
# }
|
2555
|
-
#
|
2556
2186
|
# @!attribute [rw] name
|
2557
2187
|
# The store's name.
|
2558
2188
|
# @return [String]
|
@@ -2632,15 +2262,6 @@ module Aws::Omics
|
|
2632
2262
|
include Aws::Structure
|
2633
2263
|
end
|
2634
2264
|
|
2635
|
-
# @note When making an API call, you may pass GetWorkflowRequest
|
2636
|
-
# data as a hash:
|
2637
|
-
#
|
2638
|
-
# {
|
2639
|
-
# export: ["DEFINITION"], # accepts DEFINITION
|
2640
|
-
# id: "WorkflowId", # required
|
2641
|
-
# type: "PRIVATE", # accepts PRIVATE
|
2642
|
-
# }
|
2643
|
-
#
|
2644
2265
|
# @!attribute [rw] export
|
2645
2266
|
# The export format for the workflow.
|
2646
2267
|
# @return [Array<String>]
|
@@ -2712,7 +2333,7 @@ module Aws::Omics
|
|
2712
2333
|
# @return [String]
|
2713
2334
|
#
|
2714
2335
|
# @!attribute [rw] storage_capacity
|
2715
|
-
# The workflow's storage capacity.
|
2336
|
+
# The workflow's storage capacity in gigabytes.
|
2716
2337
|
# @return [Integer]
|
2717
2338
|
#
|
2718
2339
|
# @!attribute [rw] tags
|
@@ -2747,15 +2368,6 @@ module Aws::Omics
|
|
2747
2368
|
|
2748
2369
|
# A filter for import read set jobs.
|
2749
2370
|
#
|
2750
|
-
# @note When making an API call, you may pass ImportReadSetFilter
|
2751
|
-
# data as a hash:
|
2752
|
-
#
|
2753
|
-
# {
|
2754
|
-
# created_after: Time.now,
|
2755
|
-
# created_before: Time.now,
|
2756
|
-
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
2757
|
-
# }
|
2758
|
-
#
|
2759
2371
|
# @!attribute [rw] created_after
|
2760
2372
|
# The filter's start date.
|
2761
2373
|
# @return [Time]
|
@@ -2883,15 +2495,6 @@ module Aws::Omics
|
|
2883
2495
|
|
2884
2496
|
# A filter for import references.
|
2885
2497
|
#
|
2886
|
-
# @note When making an API call, you may pass ImportReferenceFilter
|
2887
|
-
# data as a hash:
|
2888
|
-
#
|
2889
|
-
# {
|
2890
|
-
# created_after: Time.now,
|
2891
|
-
# created_before: Time.now,
|
2892
|
-
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
2893
|
-
# }
|
2894
|
-
#
|
2895
2498
|
# @!attribute [rw] created_after
|
2896
2499
|
# The filter's start date.
|
2897
2500
|
# @return [Time]
|
@@ -3007,14 +2610,6 @@ module Aws::Omics
|
|
3007
2610
|
|
3008
2611
|
# A filter for annotation import jobs.
|
3009
2612
|
#
|
3010
|
-
# @note When making an API call, you may pass ListAnnotationImportJobsFilter
|
3011
|
-
# data as a hash:
|
3012
|
-
#
|
3013
|
-
# {
|
3014
|
-
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLED, COMPLETED, FAILED
|
3015
|
-
# store_name: "String",
|
3016
|
-
# }
|
3017
|
-
#
|
3018
2613
|
# @!attribute [rw] status
|
3019
2614
|
# A status to filter on.
|
3020
2615
|
# @return [String]
|
@@ -3032,19 +2627,6 @@ module Aws::Omics
|
|
3032
2627
|
include Aws::Structure
|
3033
2628
|
end
|
3034
2629
|
|
3035
|
-
# @note When making an API call, you may pass ListAnnotationImportJobsRequest
|
3036
|
-
# data as a hash:
|
3037
|
-
#
|
3038
|
-
# {
|
3039
|
-
# filter: {
|
3040
|
-
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLED, COMPLETED, FAILED
|
3041
|
-
# store_name: "String",
|
3042
|
-
# },
|
3043
|
-
# ids: ["ResourceIdentifier"],
|
3044
|
-
# max_results: 1,
|
3045
|
-
# next_token: "ListAnnotationImportJobsRequestNextTokenString",
|
3046
|
-
# }
|
3047
|
-
#
|
3048
2630
|
# @!attribute [rw] filter
|
3049
2631
|
# A filter to apply to the list.
|
3050
2632
|
# @return [Types::ListAnnotationImportJobsFilter]
|
@@ -3092,13 +2674,6 @@ module Aws::Omics
|
|
3092
2674
|
|
3093
2675
|
# A filter for annotation stores.
|
3094
2676
|
#
|
3095
|
-
# @note When making an API call, you may pass ListAnnotationStoresFilter
|
3096
|
-
# data as a hash:
|
3097
|
-
#
|
3098
|
-
# {
|
3099
|
-
# status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED
|
3100
|
-
# }
|
3101
|
-
#
|
3102
2677
|
# @!attribute [rw] status
|
3103
2678
|
# A status to filter on.
|
3104
2679
|
# @return [String]
|
@@ -3111,18 +2686,6 @@ module Aws::Omics
|
|
3111
2686
|
include Aws::Structure
|
3112
2687
|
end
|
3113
2688
|
|
3114
|
-
# @note When making an API call, you may pass ListAnnotationStoresRequest
|
3115
|
-
# data as a hash:
|
3116
|
-
#
|
3117
|
-
# {
|
3118
|
-
# filter: {
|
3119
|
-
# status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED
|
3120
|
-
# },
|
3121
|
-
# ids: ["ResourceIdentifier"],
|
3122
|
-
# max_results: 1,
|
3123
|
-
# next_token: "ListAnnotationStoresRequestNextTokenString",
|
3124
|
-
# }
|
3125
|
-
#
|
3126
2689
|
# @!attribute [rw] filter
|
3127
2690
|
# A filter to apply to the list.
|
3128
2691
|
# @return [Types::ListAnnotationStoresFilter]
|
@@ -3168,20 +2731,6 @@ module Aws::Omics
|
|
3168
2731
|
include Aws::Structure
|
3169
2732
|
end
|
3170
2733
|
|
3171
|
-
# @note When making an API call, you may pass ListReadSetActivationJobsRequest
|
3172
|
-
# data as a hash:
|
3173
|
-
#
|
3174
|
-
# {
|
3175
|
-
# filter: {
|
3176
|
-
# created_after: Time.now,
|
3177
|
-
# created_before: Time.now,
|
3178
|
-
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
3179
|
-
# },
|
3180
|
-
# max_results: 1,
|
3181
|
-
# next_token: "NextToken",
|
3182
|
-
# sequence_store_id: "SequenceStoreId", # required
|
3183
|
-
# }
|
3184
|
-
#
|
3185
2734
|
# @!attribute [rw] filter
|
3186
2735
|
# A filter to apply to the list.
|
3187
2736
|
# @return [Types::ActivateReadSetFilter]
|
@@ -3228,20 +2777,6 @@ module Aws::Omics
|
|
3228
2777
|
include Aws::Structure
|
3229
2778
|
end
|
3230
2779
|
|
3231
|
-
# @note When making an API call, you may pass ListReadSetExportJobsRequest
|
3232
|
-
# data as a hash:
|
3233
|
-
#
|
3234
|
-
# {
|
3235
|
-
# filter: {
|
3236
|
-
# created_after: Time.now,
|
3237
|
-
# created_before: Time.now,
|
3238
|
-
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
3239
|
-
# },
|
3240
|
-
# max_results: 1,
|
3241
|
-
# next_token: "NextToken",
|
3242
|
-
# sequence_store_id: "SequenceStoreId", # required
|
3243
|
-
# }
|
3244
|
-
#
|
3245
2780
|
# @!attribute [rw] filter
|
3246
2781
|
# A filter to apply to the list.
|
3247
2782
|
# @return [Types::ExportReadSetFilter]
|
@@ -3287,20 +2822,6 @@ module Aws::Omics
|
|
3287
2822
|
include Aws::Structure
|
3288
2823
|
end
|
3289
2824
|
|
3290
|
-
# @note When making an API call, you may pass ListReadSetImportJobsRequest
|
3291
|
-
# data as a hash:
|
3292
|
-
#
|
3293
|
-
# {
|
3294
|
-
# filter: {
|
3295
|
-
# created_after: Time.now,
|
3296
|
-
# created_before: Time.now,
|
3297
|
-
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
3298
|
-
# },
|
3299
|
-
# max_results: 1,
|
3300
|
-
# next_token: "NextToken",
|
3301
|
-
# sequence_store_id: "SequenceStoreId", # required
|
3302
|
-
# }
|
3303
|
-
#
|
3304
2825
|
# @!attribute [rw] filter
|
3305
2826
|
# A filter to apply to the list.
|
3306
2827
|
# @return [Types::ImportReadSetFilter]
|
@@ -3346,22 +2867,6 @@ module Aws::Omics
|
|
3346
2867
|
include Aws::Structure
|
3347
2868
|
end
|
3348
2869
|
|
3349
|
-
# @note When making an API call, you may pass ListReadSetsRequest
|
3350
|
-
# data as a hash:
|
3351
|
-
#
|
3352
|
-
# {
|
3353
|
-
# filter: {
|
3354
|
-
# created_after: Time.now,
|
3355
|
-
# created_before: Time.now,
|
3356
|
-
# name: "ReadSetName",
|
3357
|
-
# reference_arn: "ReferenceArn",
|
3358
|
-
# status: "ARCHIVED", # accepts ARCHIVED, ACTIVATING, ACTIVE, DELETING, DELETED
|
3359
|
-
# },
|
3360
|
-
# max_results: 1,
|
3361
|
-
# next_token: "NextToken",
|
3362
|
-
# sequence_store_id: "SequenceStoreId", # required
|
3363
|
-
# }
|
3364
|
-
#
|
3365
2870
|
# @!attribute [rw] filter
|
3366
2871
|
# A filter to apply to the list.
|
3367
2872
|
# @return [Types::ReadSetFilter]
|
@@ -3407,20 +2912,6 @@ module Aws::Omics
|
|
3407
2912
|
include Aws::Structure
|
3408
2913
|
end
|
3409
2914
|
|
3410
|
-
# @note When making an API call, you may pass ListReferenceImportJobsRequest
|
3411
|
-
# data as a hash:
|
3412
|
-
#
|
3413
|
-
# {
|
3414
|
-
# filter: {
|
3415
|
-
# created_after: Time.now,
|
3416
|
-
# created_before: Time.now,
|
3417
|
-
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
3418
|
-
# },
|
3419
|
-
# max_results: 1,
|
3420
|
-
# next_token: "NextToken",
|
3421
|
-
# reference_store_id: "ReferenceStoreId", # required
|
3422
|
-
# }
|
3423
|
-
#
|
3424
2915
|
# @!attribute [rw] filter
|
3425
2916
|
# A filter to apply to the list.
|
3426
2917
|
# @return [Types::ImportReferenceFilter]
|
@@ -3466,19 +2957,6 @@ module Aws::Omics
|
|
3466
2957
|
include Aws::Structure
|
3467
2958
|
end
|
3468
2959
|
|
3469
|
-
# @note When making an API call, you may pass ListReferenceStoresRequest
|
3470
|
-
# data as a hash:
|
3471
|
-
#
|
3472
|
-
# {
|
3473
|
-
# filter: {
|
3474
|
-
# created_after: Time.now,
|
3475
|
-
# created_before: Time.now,
|
3476
|
-
# name: "ReferenceStoreName",
|
3477
|
-
# },
|
3478
|
-
# max_results: 1,
|
3479
|
-
# next_token: "NextToken",
|
3480
|
-
# }
|
3481
|
-
#
|
3482
2960
|
# @!attribute [rw] filter
|
3483
2961
|
# A filter to apply to the list.
|
3484
2962
|
# @return [Types::ReferenceStoreFilter]
|
@@ -3519,21 +2997,6 @@ module Aws::Omics
|
|
3519
2997
|
include Aws::Structure
|
3520
2998
|
end
|
3521
2999
|
|
3522
|
-
# @note When making an API call, you may pass ListReferencesRequest
|
3523
|
-
# data as a hash:
|
3524
|
-
#
|
3525
|
-
# {
|
3526
|
-
# filter: {
|
3527
|
-
# created_after: Time.now,
|
3528
|
-
# created_before: Time.now,
|
3529
|
-
# md5: "Md5",
|
3530
|
-
# name: "ReferenceName",
|
3531
|
-
# },
|
3532
|
-
# max_results: 1,
|
3533
|
-
# next_token: "NextToken",
|
3534
|
-
# reference_store_id: "ReferenceStoreId", # required
|
3535
|
-
# }
|
3536
|
-
#
|
3537
3000
|
# @!attribute [rw] filter
|
3538
3001
|
# A filter to apply to the list.
|
3539
3002
|
# @return [Types::ReferenceFilter]
|
@@ -3579,15 +3042,6 @@ module Aws::Omics
|
|
3579
3042
|
include Aws::Structure
|
3580
3043
|
end
|
3581
3044
|
|
3582
|
-
# @note When making an API call, you may pass ListRunGroupsRequest
|
3583
|
-
# data as a hash:
|
3584
|
-
#
|
3585
|
-
# {
|
3586
|
-
# max_results: 1,
|
3587
|
-
# name: "RunGroupName",
|
3588
|
-
# starting_token: "RunGroupListToken",
|
3589
|
-
# }
|
3590
|
-
#
|
3591
3045
|
# @!attribute [rw] max_results
|
3592
3046
|
# The maximum number of run groups to return in one page of results.
|
3593
3047
|
# @return [Integer]
|
@@ -3628,16 +3082,6 @@ module Aws::Omics
|
|
3628
3082
|
include Aws::Structure
|
3629
3083
|
end
|
3630
3084
|
|
3631
|
-
# @note When making an API call, you may pass ListRunTasksRequest
|
3632
|
-
# data as a hash:
|
3633
|
-
#
|
3634
|
-
# {
|
3635
|
-
# id: "RunId", # required
|
3636
|
-
# max_results: 1,
|
3637
|
-
# starting_token: "TaskListToken",
|
3638
|
-
# status: "PENDING", # accepts PENDING, STARTING, RUNNING, STOPPING, COMPLETED, CANCELLED, FAILED
|
3639
|
-
# }
|
3640
|
-
#
|
3641
3085
|
# @!attribute [rw] id
|
3642
3086
|
# The run's ID.
|
3643
3087
|
# @return [String]
|
@@ -3683,16 +3127,6 @@ module Aws::Omics
|
|
3683
3127
|
include Aws::Structure
|
3684
3128
|
end
|
3685
3129
|
|
3686
|
-
# @note When making an API call, you may pass ListRunsRequest
|
3687
|
-
# data as a hash:
|
3688
|
-
#
|
3689
|
-
# {
|
3690
|
-
# max_results: 1,
|
3691
|
-
# name: "RunName",
|
3692
|
-
# run_group_id: "RunGroupId",
|
3693
|
-
# starting_token: "RunListToken",
|
3694
|
-
# }
|
3695
|
-
#
|
3696
3130
|
# @!attribute [rw] max_results
|
3697
3131
|
# The maximum number of runs to return in one page of results.
|
3698
3132
|
# @return [Integer]
|
@@ -3738,19 +3172,6 @@ module Aws::Omics
|
|
3738
3172
|
include Aws::Structure
|
3739
3173
|
end
|
3740
3174
|
|
3741
|
-
# @note When making an API call, you may pass ListSequenceStoresRequest
|
3742
|
-
# data as a hash:
|
3743
|
-
#
|
3744
|
-
# {
|
3745
|
-
# filter: {
|
3746
|
-
# created_after: Time.now,
|
3747
|
-
# created_before: Time.now,
|
3748
|
-
# name: "SequenceStoreName",
|
3749
|
-
# },
|
3750
|
-
# max_results: 1,
|
3751
|
-
# next_token: "NextToken",
|
3752
|
-
# }
|
3753
|
-
#
|
3754
3175
|
# @!attribute [rw] filter
|
3755
3176
|
# A filter to apply to the list.
|
3756
3177
|
# @return [Types::SequenceStoreFilter]
|
@@ -3791,13 +3212,6 @@ module Aws::Omics
|
|
3791
3212
|
include Aws::Structure
|
3792
3213
|
end
|
3793
3214
|
|
3794
|
-
# @note When making an API call, you may pass ListTagsForResourceRequest
|
3795
|
-
# data as a hash:
|
3796
|
-
#
|
3797
|
-
# {
|
3798
|
-
# resource_arn: "TagArn", # required
|
3799
|
-
# }
|
3800
|
-
#
|
3801
3215
|
# @!attribute [rw] resource_arn
|
3802
3216
|
# The resource's ARN.
|
3803
3217
|
# @return [String]
|
@@ -3824,14 +3238,6 @@ module Aws::Omics
|
|
3824
3238
|
|
3825
3239
|
# A filter for variant import jobs.
|
3826
3240
|
#
|
3827
|
-
# @note When making an API call, you may pass ListVariantImportJobsFilter
|
3828
|
-
# data as a hash:
|
3829
|
-
#
|
3830
|
-
# {
|
3831
|
-
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLED, COMPLETED, FAILED
|
3832
|
-
# store_name: "String",
|
3833
|
-
# }
|
3834
|
-
#
|
3835
3241
|
# @!attribute [rw] status
|
3836
3242
|
# A status to filter on.
|
3837
3243
|
# @return [String]
|
@@ -3849,19 +3255,6 @@ module Aws::Omics
|
|
3849
3255
|
include Aws::Structure
|
3850
3256
|
end
|
3851
3257
|
|
3852
|
-
# @note When making an API call, you may pass ListVariantImportJobsRequest
|
3853
|
-
# data as a hash:
|
3854
|
-
#
|
3855
|
-
# {
|
3856
|
-
# filter: {
|
3857
|
-
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLED, COMPLETED, FAILED
|
3858
|
-
# store_name: "String",
|
3859
|
-
# },
|
3860
|
-
# ids: ["ResourceIdentifier"],
|
3861
|
-
# max_results: 1,
|
3862
|
-
# next_token: "ListVariantImportJobsRequestNextTokenString",
|
3863
|
-
# }
|
3864
|
-
#
|
3865
3258
|
# @!attribute [rw] filter
|
3866
3259
|
# A filter to apply to the list.
|
3867
3260
|
# @return [Types::ListVariantImportJobsFilter]
|
@@ -3909,13 +3302,6 @@ module Aws::Omics
|
|
3909
3302
|
|
3910
3303
|
# A filter for variant stores.
|
3911
3304
|
#
|
3912
|
-
# @note When making an API call, you may pass ListVariantStoresFilter
|
3913
|
-
# data as a hash:
|
3914
|
-
#
|
3915
|
-
# {
|
3916
|
-
# status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED
|
3917
|
-
# }
|
3918
|
-
#
|
3919
3305
|
# @!attribute [rw] status
|
3920
3306
|
# A status to filter on.
|
3921
3307
|
# @return [String]
|
@@ -3928,18 +3314,6 @@ module Aws::Omics
|
|
3928
3314
|
include Aws::Structure
|
3929
3315
|
end
|
3930
3316
|
|
3931
|
-
# @note When making an API call, you may pass ListVariantStoresRequest
|
3932
|
-
# data as a hash:
|
3933
|
-
#
|
3934
|
-
# {
|
3935
|
-
# filter: {
|
3936
|
-
# status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED
|
3937
|
-
# },
|
3938
|
-
# ids: ["ResourceIdentifier"],
|
3939
|
-
# max_results: 1,
|
3940
|
-
# next_token: "ListVariantStoresRequestNextTokenString",
|
3941
|
-
# }
|
3942
|
-
#
|
3943
3317
|
# @!attribute [rw] filter
|
3944
3318
|
# A filter to apply to the list.
|
3945
3319
|
# @return [Types::ListVariantStoresFilter]
|
@@ -3985,16 +3359,6 @@ module Aws::Omics
|
|
3985
3359
|
include Aws::Structure
|
3986
3360
|
end
|
3987
3361
|
|
3988
|
-
# @note When making an API call, you may pass ListWorkflowsRequest
|
3989
|
-
# data as a hash:
|
3990
|
-
#
|
3991
|
-
# {
|
3992
|
-
# max_results: 1,
|
3993
|
-
# name: "WorkflowName",
|
3994
|
-
# starting_token: "WorkflowListToken",
|
3995
|
-
# type: "PRIVATE", # accepts PRIVATE
|
3996
|
-
# }
|
3997
|
-
#
|
3998
3362
|
# @!attribute [rw] max_results
|
3999
3363
|
# The maximum number of workflows to return in one page of results.
|
4000
3364
|
# @return [Integer]
|
@@ -4055,21 +3419,6 @@ module Aws::Omics
|
|
4055
3419
|
|
4056
3420
|
# Read options for an annotation import job.
|
4057
3421
|
#
|
4058
|
-
# @note When making an API call, you may pass ReadOptions
|
4059
|
-
# data as a hash:
|
4060
|
-
#
|
4061
|
-
# {
|
4062
|
-
# comment: "CommentChar",
|
4063
|
-
# encoding: "Encoding",
|
4064
|
-
# escape: "EscapeChar",
|
4065
|
-
# escape_quotes: false,
|
4066
|
-
# header: false,
|
4067
|
-
# line_sep: "LineSep",
|
4068
|
-
# quote: "Quote",
|
4069
|
-
# quote_all: false,
|
4070
|
-
# sep: "Separator",
|
4071
|
-
# }
|
4072
|
-
#
|
4073
3422
|
# @!attribute [rw] comment
|
4074
3423
|
# The file's comment character.
|
4075
3424
|
# @return [String]
|
@@ -4173,17 +3522,6 @@ module Aws::Omics
|
|
4173
3522
|
|
4174
3523
|
# A filter for read sets.
|
4175
3524
|
#
|
4176
|
-
# @note When making an API call, you may pass ReadSetFilter
|
4177
|
-
# data as a hash:
|
4178
|
-
#
|
4179
|
-
# {
|
4180
|
-
# created_after: Time.now,
|
4181
|
-
# created_before: Time.now,
|
4182
|
-
# name: "ReadSetName",
|
4183
|
-
# reference_arn: "ReferenceArn",
|
4184
|
-
# status: "ARCHIVED", # accepts ARCHIVED, ACTIVATING, ACTIVE, DELETING, DELETED
|
4185
|
-
# }
|
4186
|
-
#
|
4187
3525
|
# @!attribute [rw] created_after
|
4188
3526
|
# The filter's start date.
|
4189
3527
|
# @return [Time]
|
@@ -4306,16 +3644,6 @@ module Aws::Omics
|
|
4306
3644
|
|
4307
3645
|
# A filter for references.
|
4308
3646
|
#
|
4309
|
-
# @note When making an API call, you may pass ReferenceFilter
|
4310
|
-
# data as a hash:
|
4311
|
-
#
|
4312
|
-
# {
|
4313
|
-
# created_after: Time.now,
|
4314
|
-
# created_before: Time.now,
|
4315
|
-
# md5: "Md5",
|
4316
|
-
# name: "ReferenceName",
|
4317
|
-
# }
|
4318
|
-
#
|
4319
3647
|
# @!attribute [rw] created_after
|
4320
3648
|
# The filter's start date.
|
4321
3649
|
# @return [Time]
|
@@ -4461,15 +3789,6 @@ module Aws::Omics
|
|
4461
3789
|
|
4462
3790
|
# A filter for reference stores.
|
4463
3791
|
#
|
4464
|
-
# @note When making an API call, you may pass ReferenceStoreFilter
|
4465
|
-
# data as a hash:
|
4466
|
-
#
|
4467
|
-
# {
|
4468
|
-
# created_after: Time.now,
|
4469
|
-
# created_before: Time.now,
|
4470
|
-
# name: "ReferenceStoreName",
|
4471
|
-
# }
|
4472
|
-
#
|
4473
3792
|
# @!attribute [rw] created_after
|
4474
3793
|
# The filter's start date.
|
4475
3794
|
# @return [Time]
|
@@ -4537,7 +3856,7 @@ module Aws::Omics
|
|
4537
3856
|
# @return [Integer]
|
4538
3857
|
#
|
4539
3858
|
# @!attribute [rw] max_duration
|
4540
|
-
# The group's maximum duration setting.
|
3859
|
+
# The group's maximum duration setting in minutes.
|
4541
3860
|
# @return [Integer]
|
4542
3861
|
#
|
4543
3862
|
# @!attribute [rw] max_runs
|
@@ -4691,15 +4010,6 @@ module Aws::Omics
|
|
4691
4010
|
|
4692
4011
|
# A filter for a sequence store.
|
4693
4012
|
#
|
4694
|
-
# @note When making an API call, you may pass SequenceStoreFilter
|
4695
|
-
# data as a hash:
|
4696
|
-
#
|
4697
|
-
# {
|
4698
|
-
# created_after: Time.now,
|
4699
|
-
# created_before: Time.now,
|
4700
|
-
# name: "SequenceStoreName",
|
4701
|
-
# }
|
4702
|
-
#
|
4703
4013
|
# @!attribute [rw] created_after
|
4704
4014
|
# The filter's start date.
|
4705
4015
|
# @return [Time]
|
@@ -4737,14 +4047,6 @@ module Aws::Omics
|
|
4737
4047
|
|
4738
4048
|
# Source files for a sequence.
|
4739
4049
|
#
|
4740
|
-
# @note When making an API call, you may pass SourceFiles
|
4741
|
-
# data as a hash:
|
4742
|
-
#
|
4743
|
-
# {
|
4744
|
-
# source1: "S3Uri", # required
|
4745
|
-
# source2: "S3Uri",
|
4746
|
-
# }
|
4747
|
-
#
|
4748
4050
|
# @!attribute [rw] source1
|
4749
4051
|
# The location of the first file in Amazon S3.
|
4750
4052
|
# @return [String]
|
@@ -4764,14 +4066,6 @@ module Aws::Omics
|
|
4764
4066
|
|
4765
4067
|
# Server-side encryption (SSE) settings for a store.
|
4766
4068
|
#
|
4767
|
-
# @note When making an API call, you may pass SseConfig
|
4768
|
-
# data as a hash:
|
4769
|
-
#
|
4770
|
-
# {
|
4771
|
-
# key_arn: "SseConfigKeyArnString",
|
4772
|
-
# type: "KMS", # required, accepts KMS
|
4773
|
-
# }
|
4774
|
-
#
|
4775
4069
|
# @!attribute [rw] key_arn
|
4776
4070
|
# An encryption key ARN.
|
4777
4071
|
# @return [String]
|
@@ -4789,39 +4083,6 @@ module Aws::Omics
|
|
4789
4083
|
include Aws::Structure
|
4790
4084
|
end
|
4791
4085
|
|
4792
|
-
# @note When making an API call, you may pass StartAnnotationImportRequest
|
4793
|
-
# data as a hash:
|
4794
|
-
#
|
4795
|
-
# {
|
4796
|
-
# destination_name: "StoreName", # required
|
4797
|
-
# format_options: {
|
4798
|
-
# tsv_options: {
|
4799
|
-
# read_options: {
|
4800
|
-
# comment: "CommentChar",
|
4801
|
-
# encoding: "Encoding",
|
4802
|
-
# escape: "EscapeChar",
|
4803
|
-
# escape_quotes: false,
|
4804
|
-
# header: false,
|
4805
|
-
# line_sep: "LineSep",
|
4806
|
-
# quote: "Quote",
|
4807
|
-
# quote_all: false,
|
4808
|
-
# sep: "Separator",
|
4809
|
-
# },
|
4810
|
-
# },
|
4811
|
-
# vcf_options: {
|
4812
|
-
# ignore_filter_field: false,
|
4813
|
-
# ignore_qual_field: false,
|
4814
|
-
# },
|
4815
|
-
# },
|
4816
|
-
# items: [ # required
|
4817
|
-
# {
|
4818
|
-
# source: "S3Uri", # required
|
4819
|
-
# },
|
4820
|
-
# ],
|
4821
|
-
# role_arn: "Arn", # required
|
4822
|
-
# run_left_normalization: false,
|
4823
|
-
# }
|
4824
|
-
#
|
4825
4086
|
# @!attribute [rw] destination_name
|
4826
4087
|
# A destination annotation store for the job.
|
4827
4088
|
# @return [String]
|
@@ -4866,19 +4127,6 @@ module Aws::Omics
|
|
4866
4127
|
include Aws::Structure
|
4867
4128
|
end
|
4868
4129
|
|
4869
|
-
# @note When making an API call, you may pass StartReadSetActivationJobRequest
|
4870
|
-
# data as a hash:
|
4871
|
-
#
|
4872
|
-
# {
|
4873
|
-
# client_token: "ClientToken",
|
4874
|
-
# sequence_store_id: "SequenceStoreId", # required
|
4875
|
-
# sources: [ # required
|
4876
|
-
# {
|
4877
|
-
# read_set_id: "ReadSetId", # required
|
4878
|
-
# },
|
4879
|
-
# ],
|
4880
|
-
# }
|
4881
|
-
#
|
4882
4130
|
# @!attribute [rw] client_token
|
4883
4131
|
# To ensure that jobs don't run multiple times, specify a unique
|
4884
4132
|
# token for each job.
|
@@ -4889,7 +4137,7 @@ module Aws::Omics
|
|
4889
4137
|
# @return [String]
|
4890
4138
|
#
|
4891
4139
|
# @!attribute [rw] sources
|
4892
|
-
# The job's
|
4140
|
+
# The job's source files.
|
4893
4141
|
# @return [Array<Types::StartReadSetActivationJobSourceItem>]
|
4894
4142
|
#
|
4895
4143
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetActivationJobRequest AWS API Documentation
|
@@ -4931,13 +4179,6 @@ module Aws::Omics
|
|
4931
4179
|
|
4932
4180
|
# A source for a read set activation job.
|
4933
4181
|
#
|
4934
|
-
# @note When making an API call, you may pass StartReadSetActivationJobSourceItem
|
4935
|
-
# data as a hash:
|
4936
|
-
#
|
4937
|
-
# {
|
4938
|
-
# read_set_id: "ReadSetId", # required
|
4939
|
-
# }
|
4940
|
-
#
|
4941
4182
|
# @!attribute [rw] read_set_id
|
4942
4183
|
# The source's read set ID.
|
4943
4184
|
# @return [String]
|
@@ -4950,21 +4191,6 @@ module Aws::Omics
|
|
4950
4191
|
include Aws::Structure
|
4951
4192
|
end
|
4952
4193
|
|
4953
|
-
# @note When making an API call, you may pass StartReadSetExportJobRequest
|
4954
|
-
# data as a hash:
|
4955
|
-
#
|
4956
|
-
# {
|
4957
|
-
# client_token: "ClientToken",
|
4958
|
-
# destination: "S3Destination", # required
|
4959
|
-
# role_arn: "RoleArn", # required
|
4960
|
-
# sequence_store_id: "SequenceStoreId", # required
|
4961
|
-
# sources: [ # required
|
4962
|
-
# {
|
4963
|
-
# read_set_id: "ReadSetId", # required
|
4964
|
-
# },
|
4965
|
-
# ],
|
4966
|
-
# }
|
4967
|
-
#
|
4968
4194
|
# @!attribute [rw] client_token
|
4969
4195
|
# To ensure that jobs don't run multiple times, specify a unique
|
4970
4196
|
# token for each job.
|
@@ -4983,7 +4209,7 @@ module Aws::Omics
|
|
4983
4209
|
# @return [String]
|
4984
4210
|
#
|
4985
4211
|
# @!attribute [rw] sources
|
4986
|
-
#
|
4212
|
+
# The job's source files.
|
4987
4213
|
# @return [Array<Types::ExportReadSet>]
|
4988
4214
|
#
|
4989
4215
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetExportJobRequest AWS API Documentation
|
@@ -5030,33 +4256,6 @@ module Aws::Omics
|
|
5030
4256
|
include Aws::Structure
|
5031
4257
|
end
|
5032
4258
|
|
5033
|
-
# @note When making an API call, you may pass StartReadSetImportJobRequest
|
5034
|
-
# data as a hash:
|
5035
|
-
#
|
5036
|
-
# {
|
5037
|
-
# client_token: "ClientToken",
|
5038
|
-
# role_arn: "RoleArn", # required
|
5039
|
-
# sequence_store_id: "SequenceStoreId", # required
|
5040
|
-
# sources: [ # required
|
5041
|
-
# {
|
5042
|
-
# description: "ReadSetDescription",
|
5043
|
-
# generated_from: "GeneratedFrom",
|
5044
|
-
# name: "ReadSetName",
|
5045
|
-
# reference_arn: "ReferenceArn", # required
|
5046
|
-
# sample_id: "SampleId", # required
|
5047
|
-
# source_file_type: "FASTQ", # required, accepts FASTQ, BAM, CRAM
|
5048
|
-
# source_files: { # required
|
5049
|
-
# source1: "S3Uri", # required
|
5050
|
-
# source2: "S3Uri",
|
5051
|
-
# },
|
5052
|
-
# subject_id: "SubjectId", # required
|
5053
|
-
# tags: {
|
5054
|
-
# "TagKey" => "TagValue",
|
5055
|
-
# },
|
5056
|
-
# },
|
5057
|
-
# ],
|
5058
|
-
# }
|
5059
|
-
#
|
5060
4259
|
# @!attribute [rw] client_token
|
5061
4260
|
# To ensure that jobs don't run multiple times, specify a unique
|
5062
4261
|
# token for each job.
|
@@ -5071,7 +4270,7 @@ module Aws::Omics
|
|
5071
4270
|
# @return [String]
|
5072
4271
|
#
|
5073
4272
|
# @!attribute [rw] sources
|
5074
|
-
#
|
4273
|
+
# The job's source files.
|
5075
4274
|
# @return [Array<Types::StartReadSetImportJobSourceItem>]
|
5076
4275
|
#
|
5077
4276
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetImportJobRequest AWS API Documentation
|
@@ -5119,26 +4318,6 @@ module Aws::Omics
|
|
5119
4318
|
|
5120
4319
|
# A source for a read set import job.
|
5121
4320
|
#
|
5122
|
-
# @note When making an API call, you may pass StartReadSetImportJobSourceItem
|
5123
|
-
# data as a hash:
|
5124
|
-
#
|
5125
|
-
# {
|
5126
|
-
# description: "ReadSetDescription",
|
5127
|
-
# generated_from: "GeneratedFrom",
|
5128
|
-
# name: "ReadSetName",
|
5129
|
-
# reference_arn: "ReferenceArn", # required
|
5130
|
-
# sample_id: "SampleId", # required
|
5131
|
-
# source_file_type: "FASTQ", # required, accepts FASTQ, BAM, CRAM
|
5132
|
-
# source_files: { # required
|
5133
|
-
# source1: "S3Uri", # required
|
5134
|
-
# source2: "S3Uri",
|
5135
|
-
# },
|
5136
|
-
# subject_id: "SubjectId", # required
|
5137
|
-
# tags: {
|
5138
|
-
# "TagKey" => "TagValue",
|
5139
|
-
# },
|
5140
|
-
# }
|
5141
|
-
#
|
5142
4321
|
# @!attribute [rw] description
|
5143
4322
|
# The source's description.
|
5144
4323
|
# @return [String]
|
@@ -5191,25 +4370,6 @@ module Aws::Omics
|
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include Aws::Structure
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end
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5193
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5194
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-
# @note When making an API call, you may pass StartReferenceImportJobRequest
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5195
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-
# data as a hash:
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5196
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-
#
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5197
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# {
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5198
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# client_token: "ClientToken",
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5199
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# reference_store_id: "ReferenceStoreId", # required
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5200
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-
# role_arn: "RoleArn", # required
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5201
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-
# sources: [ # required
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5202
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-
# {
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5203
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# description: "ReferenceDescription",
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# name: "ReferenceName", # required
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5205
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-
# source_file: "S3Uri", # required
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# tags: {
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# "TagKey" => "TagValue",
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# },
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# },
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# ],
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# }
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#
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# @!attribute [rw] client_token
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# To ensure that jobs don't run multiple times, specify a unique
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# token for each job.
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@@ -5224,7 +4384,7 @@ module Aws::Omics
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# @return [String]
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#
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# @!attribute [rw] sources
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-
#
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+
# The job's source files.
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# @return [Array<Types::StartReferenceImportJobSourceItem>]
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#
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# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReferenceImportJobRequest AWS API Documentation
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@@ -5272,18 +4432,6 @@ module Aws::Omics
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# A source for a reference import job.
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#
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# @note When making an API call, you may pass StartReferenceImportJobSourceItem
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# data as a hash:
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#
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# {
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# description: "ReferenceDescription",
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# name: "ReferenceName", # required
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# source_file: "S3Uri", # required
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# tags: {
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# "TagKey" => "TagValue",
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# },
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# }
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#
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# @!attribute [rw] description
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# The source's description.
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# @return [String]
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@@ -5311,28 +4459,6 @@ module Aws::Omics
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include Aws::Structure
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end
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# @note When making an API call, you may pass StartRunRequest
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# data as a hash:
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#
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# {
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5318
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# log_level: "OFF", # accepts OFF, FATAL, ERROR, ALL
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# name: "RunName",
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# output_uri: "RunOutputUri",
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# parameters: {
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# },
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# priority: 1,
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# request_id: "RunRequestId", # required
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5325
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# role_arn: "RunRoleArn", # required
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# run_group_id: "RunGroupId",
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# run_id: "RunId",
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# storage_capacity: 1,
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# tags: {
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5330
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# "TagKey" => "TagValue",
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# },
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-
# workflow_id: "WorkflowId",
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# workflow_type: "PRIVATE", # accepts PRIVATE
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-
# }
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5335
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-
#
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# @!attribute [rw] log_level
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# A log level for the run.
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# @return [String]
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@@ -5354,7 +4480,8 @@ module Aws::Omics
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# @return [Integer]
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#
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# @!attribute [rw] request_id
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-
#
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+
# To ensure that requests don't run multiple times, specify a unique
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# ID for each request.
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#
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# **A suitable default value is auto-generated.** You should normally
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# not need to pass this option.
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@@ -5373,7 +4500,7 @@ module Aws::Omics
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# @return [String]
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#
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# @!attribute [rw] storage_capacity
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# A storage capacity for the run.
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+
# A storage capacity for the run in gigabytes.
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# @return [Integer]
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#
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# @!attribute [rw] tags
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@@ -5435,20 +4562,6 @@ module Aws::Omics
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include Aws::Structure
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end
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5437
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5438
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-
# @note When making an API call, you may pass StartVariantImportRequest
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5439
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-
# data as a hash:
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5440
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-
#
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5441
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# {
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5442
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# destination_name: "StoreName", # required
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5443
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# items: [ # required
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5444
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# {
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5445
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# source: "S3Uri", # required
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5446
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# },
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5447
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# ],
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5448
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# role_arn: "Arn", # required
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# run_left_normalization: false,
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# }
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-
#
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# @!attribute [rw] destination_name
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# The destination variant store for the job.
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# @return [String]
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@@ -5511,16 +4624,6 @@ module Aws::Omics
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class Unknown < StoreOptions; end
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end
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# @note When making an API call, you may pass TagResourceRequest
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5515
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# data as a hash:
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5516
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-
#
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5517
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-
# {
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5518
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# resource_arn: "TagArn", # required
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5519
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# tags: { # required
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5520
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# "TagKey" => "TagValue",
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# },
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# }
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5523
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#
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# @!attribute [rw] resource_arn
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# The resource's ARN.
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# @return [String]
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@@ -5553,7 +4656,7 @@ module Aws::Omics
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# @return [Time]
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#
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# @!attribute [rw] memory
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5556
|
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# The task's memory.
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+
# The task's memory use in gigabyes.
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# @return [Integer]
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#
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# @!attribute [rw] name
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@@ -5606,23 +4709,6 @@ module Aws::Omics
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# Formatting options for a TSV file.
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#
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5609
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-
# @note When making an API call, you may pass TsvOptions
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5610
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# data as a hash:
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5611
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-
#
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5612
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# {
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# read_options: {
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# comment: "CommentChar",
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# encoding: "Encoding",
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# escape: "EscapeChar",
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5617
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# escape_quotes: false,
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# header: false,
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# line_sep: "LineSep",
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5620
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# quote: "Quote",
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# quote_all: false,
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# sep: "Separator",
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# },
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# }
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5625
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-
#
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# @!attribute [rw] read_options
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# The file's read options.
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# @return [Types::ReadOptions]
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@@ -5637,21 +4723,6 @@ module Aws::Omics
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# File settings for a TSV store.
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#
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5640
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-
# @note When making an API call, you may pass TsvStoreOptions
|
5641
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# data as a hash:
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5642
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-
#
|
5643
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# {
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5644
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-
# annotation_type: "GENERIC", # accepts GENERIC, CHR_POS, CHR_POS_REF_ALT, CHR_START_END_ONE_BASE, CHR_START_END_REF_ALT_ONE_BASE, CHR_START_END_ZERO_BASE, CHR_START_END_REF_ALT_ZERO_BASE
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5645
|
-
# format_to_header: {
|
5646
|
-
# "CHR" => "FormatToHeaderValueString",
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|
-
# },
|
5648
|
-
# schema: [
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5649
|
-
# {
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5650
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-
# "String" => "LONG", # accepts LONG, INT, STRING, FLOAT, DOUBLE, BOOLEAN
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5651
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# },
|
5652
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-
# ],
|
5653
|
-
# }
|
5654
|
-
#
|
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|
# @!attribute [rw] annotation_type
|
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|
# The store's annotation type.
|
5657
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|
# @return [String]
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@@ -5674,14 +4745,6 @@ module Aws::Omics
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|
5674
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|
include Aws::Structure
|
5675
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|
end
|
5676
4747
|
|
5677
|
-
# @note When making an API call, you may pass UntagResourceRequest
|
5678
|
-
# data as a hash:
|
5679
|
-
#
|
5680
|
-
# {
|
5681
|
-
# resource_arn: "TagArn", # required
|
5682
|
-
# tag_keys: ["TagKey"], # required
|
5683
|
-
# }
|
5684
|
-
#
|
5685
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|
# @!attribute [rw] resource_arn
|
5686
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|
# The resource's ARN.
|
5687
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|
# @return [String]
|
@@ -5703,14 +4766,6 @@ module Aws::Omics
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|
5703
4766
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#
|
5704
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|
class UntagResourceResponse < Aws::EmptyStructure; end
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5705
4768
|
|
5706
|
-
# @note When making an API call, you may pass UpdateAnnotationStoreRequest
|
5707
|
-
# data as a hash:
|
5708
|
-
#
|
5709
|
-
# {
|
5710
|
-
# description: "StoreDescription",
|
5711
|
-
# name: "String", # required
|
5712
|
-
# }
|
5713
|
-
#
|
5714
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# @!attribute [rw] description
|
5715
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|
# A description for the store.
|
5716
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# @return [String]
|
@@ -5780,17 +4835,6 @@ module Aws::Omics
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|
5780
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|
include Aws::Structure
|
5781
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|
end
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5782
4837
|
|
5783
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-
# @note When making an API call, you may pass UpdateRunGroupRequest
|
5784
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-
# data as a hash:
|
5785
|
-
#
|
5786
|
-
# {
|
5787
|
-
# id: "RunGroupId", # required
|
5788
|
-
# max_cpus: 1,
|
5789
|
-
# max_duration: 1,
|
5790
|
-
# max_runs: 1,
|
5791
|
-
# name: "RunGroupName",
|
5792
|
-
# }
|
5793
|
-
#
|
5794
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|
# @!attribute [rw] id
|
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# The group's ID.
|
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# @return [String]
|
@@ -5800,7 +4844,7 @@ module Aws::Omics
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# @return [Integer]
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#
|
5802
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|
# @!attribute [rw] max_duration
|
5803
|
-
#
|
4847
|
+
# A maximum run time for the group in minutes.
|
5804
4848
|
# @return [Integer]
|
5805
4849
|
#
|
5806
4850
|
# @!attribute [rw] max_runs
|
@@ -5823,14 +4867,6 @@ module Aws::Omics
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|
5823
4867
|
include Aws::Structure
|
5824
4868
|
end
|
5825
4869
|
|
5826
|
-
# @note When making an API call, you may pass UpdateVariantStoreRequest
|
5827
|
-
# data as a hash:
|
5828
|
-
#
|
5829
|
-
# {
|
5830
|
-
# description: "StoreDescription",
|
5831
|
-
# name: "String", # required
|
5832
|
-
# }
|
5833
|
-
#
|
5834
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# @!attribute [rw] description
|
5835
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# A description for the store.
|
5836
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# @return [String]
|
@@ -5890,15 +4926,6 @@ module Aws::Omics
|
|
5890
4926
|
include Aws::Structure
|
5891
4927
|
end
|
5892
4928
|
|
5893
|
-
# @note When making an API call, you may pass UpdateWorkflowRequest
|
5894
|
-
# data as a hash:
|
5895
|
-
#
|
5896
|
-
# {
|
5897
|
-
# description: "WorkflowDescription",
|
5898
|
-
# id: "WorkflowId", # required
|
5899
|
-
# name: "WorkflowName",
|
5900
|
-
# }
|
5901
|
-
#
|
5902
4929
|
# @!attribute [rw] description
|
5903
4930
|
# A description for the workflow.
|
5904
4931
|
# @return [String]
|
@@ -5945,24 +4972,22 @@ module Aws::Omics
|
|
5945
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|
# The source file's location in Amazon S3.
|
5946
4973
|
# @return [String]
|
5947
4974
|
#
|
4975
|
+
# @!attribute [rw] status_message
|
4976
|
+
# A message that provides additional context about a job
|
4977
|
+
# @return [String]
|
4978
|
+
#
|
5948
4979
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/VariantImportItemDetail AWS API Documentation
|
5949
4980
|
#
|
5950
4981
|
class VariantImportItemDetail < Struct.new(
|
5951
4982
|
:job_status,
|
5952
|
-
:source
|
4983
|
+
:source,
|
4984
|
+
:status_message)
|
5953
4985
|
SENSITIVE = []
|
5954
4986
|
include Aws::Structure
|
5955
4987
|
end
|
5956
4988
|
|
5957
4989
|
# A imported variant item's source.
|
5958
4990
|
#
|
5959
|
-
# @note When making an API call, you may pass VariantImportItemSource
|
5960
|
-
# data as a hash:
|
5961
|
-
#
|
5962
|
-
# {
|
5963
|
-
# source: "S3Uri", # required
|
5964
|
-
# }
|
5965
|
-
#
|
5966
4991
|
# @!attribute [rw] source
|
5967
4992
|
# The source file's location in Amazon S3.
|
5968
4993
|
# @return [String]
|
@@ -6090,14 +5115,6 @@ module Aws::Omics
|
|
6090
5115
|
|
6091
5116
|
# Formatting options for a VCF file.
|
6092
5117
|
#
|
6093
|
-
# @note When making an API call, you may pass VcfOptions
|
6094
|
-
# data as a hash:
|
6095
|
-
#
|
6096
|
-
# {
|
6097
|
-
# ignore_filter_field: false,
|
6098
|
-
# ignore_qual_field: false,
|
6099
|
-
# }
|
6100
|
-
#
|
6101
5118
|
# @!attribute [rw] ignore_filter_field
|
6102
5119
|
# The file's ignore filter field setting.
|
6103
5120
|
# @return [Boolean]
|
@@ -6161,14 +5178,6 @@ module Aws::Omics
|
|
6161
5178
|
|
6162
5179
|
# A workflow parameter.
|
6163
5180
|
#
|
6164
|
-
# @note When making an API call, you may pass WorkflowParameter
|
6165
|
-
# data as a hash:
|
6166
|
-
#
|
6167
|
-
# {
|
6168
|
-
# description: "WorkflowParameterDescription",
|
6169
|
-
# optional: false,
|
6170
|
-
# }
|
6171
|
-
#
|
6172
5181
|
# @!attribute [rw] description
|
6173
5182
|
# The parameter's description.
|
6174
5183
|
# @return [String]
|