aws-sdk-omics 1.0.0 → 1.2.0

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@@ -25,15 +25,6 @@ module Aws::Omics
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  # A read set activation job filter.
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  #
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- # @note When making an API call, you may pass ActivateReadSetFilter
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- # data as a hash:
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- #
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- # {
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- # created_after: Time.now,
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- # created_before: Time.now,
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- # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
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- # }
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- #
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  # @!attribute [rw] created_after
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  # The filter's start date.
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  # @return [Time]
@@ -135,13 +126,6 @@ module Aws::Omics
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  # A source for an annotation import job.
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  #
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- # @note When making an API call, you may pass AnnotationImportItemSource
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- # data as a hash:
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- #
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- # {
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- # source: "S3Uri", # required
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- # }
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- #
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  # @!attribute [rw] source
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  # The source file's location in Amazon S3.
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  # @return [String]
@@ -272,14 +256,6 @@ module Aws::Omics
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  include Aws::Structure
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  end
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- # @note When making an API call, you may pass BatchDeleteReadSetRequest
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- # data as a hash:
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- #
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- # {
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- # ids: ["ReadSetId"], # required
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- # sequence_store_id: "SequenceStoreId", # required
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- # }
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- #
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  # @!attribute [rw] ids
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  # The read sets' IDs.
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  # @return [Array<String>]
@@ -309,13 +285,6 @@ module Aws::Omics
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  include Aws::Structure
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  end
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- # @note When making an API call, you may pass CancelAnnotationImportRequest
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- # data as a hash:
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- #
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- # {
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- # job_id: "ResourceId", # required
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- # }
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- #
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  # @!attribute [rw] job_id
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  # The job's ID.
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  # @return [String]
@@ -332,13 +301,6 @@ module Aws::Omics
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  #
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  class CancelAnnotationImportResponse < Aws::EmptyStructure; end
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- # @note When making an API call, you may pass CancelRunRequest
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- # data as a hash:
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- #
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- # {
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- # id: "RunId", # required
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- # }
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- #
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  # @!attribute [rw] id
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  # The run's ID.
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  # @return [String]
@@ -351,13 +313,6 @@ module Aws::Omics
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  include Aws::Structure
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  end
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- # @note When making an API call, you may pass CancelVariantImportRequest
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- # data as a hash:
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- #
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- # {
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- # job_id: "ResourceId", # required
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- # }
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- #
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  # @!attribute [rw] job_id
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  # The job's ID.
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  # @return [String]
@@ -388,38 +343,6 @@ module Aws::Omics
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  include Aws::Structure
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  end
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- # @note When making an API call, you may pass CreateAnnotationStoreRequest
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- # data as a hash:
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- #
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- # {
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- # description: "StoreDescription",
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- # name: "CreateAnnotationStoreRequestNameString",
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- # reference: {
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- # reference_arn: "ReferenceArn",
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- # },
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- # sse_config: {
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- # key_arn: "SseConfigKeyArnString",
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- # type: "KMS", # required, accepts KMS
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- # },
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- # store_format: "GFF", # required, accepts GFF, TSV, VCF
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- # store_options: {
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- # tsv_store_options: {
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- # annotation_type: "GENERIC", # accepts GENERIC, CHR_POS, CHR_POS_REF_ALT, CHR_START_END_ONE_BASE, CHR_START_END_REF_ALT_ONE_BASE, CHR_START_END_ZERO_BASE, CHR_START_END_REF_ALT_ZERO_BASE
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- # format_to_header: {
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- # "CHR" => "FormatToHeaderValueString",
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- # },
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- # schema: [
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- # {
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- # "String" => "LONG", # accepts LONG, INT, STRING, FLOAT, DOUBLE, BOOLEAN
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- # },
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- # ],
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- # },
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- # },
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- # tags: {
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- # "TagKey" => "TagValue",
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- # },
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- # }
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- #
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  # @!attribute [rw] description
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  # A description for the store.
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  # @return [String]
@@ -475,7 +398,8 @@ module Aws::Omics
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  # @return [String]
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  #
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  # @!attribute [rw] reference
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- # The store's genome reference.
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+ # The store's genome reference. Required for all stores except TSV
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+ # format with generic annotations.
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  # @return [Types::ReferenceItem]
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  #
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  # @!attribute [rw] status
@@ -504,22 +428,6 @@ module Aws::Omics
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  include Aws::Structure
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  end
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- # @note When making an API call, you may pass CreateReferenceStoreRequest
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- # data as a hash:
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- #
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- # {
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- # client_token: "ClientToken",
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- # description: "ReferenceStoreDescription",
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- # name: "ReferenceStoreName", # required
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- # sse_config: {
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- # key_arn: "SseConfigKeyArnString",
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- # type: "KMS", # required, accepts KMS
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- # },
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- # tags: {
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- # "TagKey" => "TagValue",
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- # },
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- # }
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- #
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  # @!attribute [rw] client_token
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  # To ensure that requests don't run multiple times, specify a unique
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  # token for each request.
@@ -590,26 +498,12 @@ module Aws::Omics
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  include Aws::Structure
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  end
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- # @note When making an API call, you may pass CreateRunGroupRequest
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- # data as a hash:
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- #
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- # {
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- # max_cpus: 1,
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- # max_duration: 1,
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- # max_runs: 1,
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- # name: "RunGroupName",
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- # request_id: "RunGroupRequestId", # required
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- # tags: {
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- # "TagKey" => "TagValue",
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- # },
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- # }
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- #
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  # @!attribute [rw] max_cpus
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  # The maximum number of CPUs to use in the group.
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  # @return [Integer]
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  #
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  # @!attribute [rw] max_duration
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- # A max duration for the group.
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+ # A maximum run time for the group in minutes.
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  # @return [Integer]
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  #
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  # @!attribute [rw] max_runs
@@ -621,7 +515,8 @@ module Aws::Omics
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  # @return [String]
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  #
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  # @!attribute [rw] request_id
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- # A request ID for the group.
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+ # To ensure that requests don't run multiple times, specify a unique
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+ # ID for each request.
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  #
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  # **A suitable default value is auto-generated.** You should normally
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  # not need to pass this option.
@@ -666,22 +561,6 @@ module Aws::Omics
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  include Aws::Structure
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  end
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- # @note When making an API call, you may pass CreateSequenceStoreRequest
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- # data as a hash:
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- #
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- # {
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- # client_token: "ClientToken",
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- # description: "SequenceStoreDescription",
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- # name: "SequenceStoreName", # required
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- # sse_config: {
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- # key_arn: "SseConfigKeyArnString",
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- # type: "KMS", # required, accepts KMS
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- # },
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- # tags: {
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- # "TagKey" => "TagValue",
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- # },
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- # }
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- #
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  # @!attribute [rw] client_token
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  # To ensure that requests don't run multiple times, specify a unique
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  # token for each request.
@@ -752,24 +631,6 @@ module Aws::Omics
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  include Aws::Structure
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  end
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- # @note When making an API call, you may pass CreateVariantStoreRequest
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- # data as a hash:
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- #
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- # {
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- # description: "StoreDescription",
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- # name: "CreateVariantStoreRequestNameString",
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- # reference: { # required
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- # reference_arn: "ReferenceArn",
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- # },
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- # sse_config: {
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- # key_arn: "SseConfigKeyArnString",
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- # type: "KMS", # required, accepts KMS
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- # },
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- # tags: {
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- # "TagKey" => "TagValue",
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- # },
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- # }
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- #
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  # @!attribute [rw] description
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  # A description for the store.
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  # @return [String]
@@ -834,29 +695,6 @@ module Aws::Omics
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  include Aws::Structure
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  end
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- # @note When making an API call, you may pass CreateWorkflowRequest
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- # data as a hash:
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- #
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- # {
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- # definition_uri: "WorkflowDefinition",
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- # definition_zip: "data",
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- # description: "WorkflowDescription",
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- # engine: "WDL", # accepts WDL, NEXTFLOW
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- # main: "WorkflowMain",
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- # name: "WorkflowName",
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- # parameter_template: {
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- # "WorkflowParameterName" => {
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- # description: "WorkflowParameterDescription",
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- # optional: false,
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- # },
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- # },
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- # request_id: "WorkflowRequestId", # required
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- # storage_capacity: 1,
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- # tags: {
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- # "TagKey" => "TagValue",
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- # },
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- # }
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- #
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  # @!attribute [rw] definition_uri
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  # The URI of a definition for the workflow.
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  # @return [String]
@@ -886,14 +724,15 @@ module Aws::Omics
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  # @return [Hash<String,Types::WorkflowParameter>]
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  #
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  # @!attribute [rw] request_id
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- # A request ID for the workflow.
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+ # To ensure that requests don't run multiple times, specify a unique
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+ # ID for each request.
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  #
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  # **A suitable default value is auto-generated.** You should normally
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  # not need to pass this option.
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  # @return [String]
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  #
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  # @!attribute [rw] storage_capacity
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- # A storage capacity for the workflow.
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+ # A storage capacity for the workflow in gigabytes.
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  # @return [Integer]
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  #
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  # @!attribute [rw] tags
@@ -944,14 +783,6 @@ module Aws::Omics
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  include Aws::Structure
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  end
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- # @note When making an API call, you may pass DeleteAnnotationStoreRequest
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- # data as a hash:
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- #
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- # {
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- # force: false,
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- # name: "String", # required
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- # }
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- #
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  # @!attribute [rw] force
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  # Whether to force deletion.
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  # @return [Boolean]
@@ -981,14 +812,6 @@ module Aws::Omics
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  include Aws::Structure
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  end
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- # @note When making an API call, you may pass DeleteReferenceRequest
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- # data as a hash:
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- #
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- # {
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- # id: "ReferenceId", # required
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- # reference_store_id: "ReferenceStoreId", # required
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- # }
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- #
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  # @!attribute [rw] id
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  # The reference's ID.
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  # @return [String]
@@ -1010,13 +833,6 @@ module Aws::Omics
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  #
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  class DeleteReferenceResponse < Aws::EmptyStructure; end
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- # @note When making an API call, you may pass DeleteReferenceStoreRequest
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- # data as a hash:
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- #
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- # {
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- # id: "ReferenceStoreId", # required
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- # }
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- #
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  # @!attribute [rw] id
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  # The store's ID.
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  # @return [String]
@@ -1033,13 +849,6 @@ module Aws::Omics
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  #
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  class DeleteReferenceStoreResponse < Aws::EmptyStructure; end
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- # @note When making an API call, you may pass DeleteRunGroupRequest
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- # data as a hash:
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- #
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- # {
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- # id: "RunGroupId", # required
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- # }
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- #
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  # @!attribute [rw] id
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  # The run group's ID.
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  # @return [String]
@@ -1052,13 +861,6 @@ module Aws::Omics
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  include Aws::Structure
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  end
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- # @note When making an API call, you may pass DeleteRunRequest
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- # data as a hash:
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- #
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- # {
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- # id: "RunId", # required
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- # }
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- #
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  # @!attribute [rw] id
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  # The run's ID.
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  # @return [String]
@@ -1071,13 +873,6 @@ module Aws::Omics
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  include Aws::Structure
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  end
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- # @note When making an API call, you may pass DeleteSequenceStoreRequest
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- # data as a hash:
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- #
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- # {
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- # id: "SequenceStoreId", # required
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- # }
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- #
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  # @!attribute [rw] id
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  # The sequence store's ID.
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  # @return [String]
@@ -1094,14 +889,6 @@ module Aws::Omics
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  #
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  class DeleteSequenceStoreResponse < Aws::EmptyStructure; end
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- # @note When making an API call, you may pass DeleteVariantStoreRequest
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- # data as a hash:
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- #
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- # {
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- # force: false,
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- # name: "String", # required
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- # }
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- #
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  # @!attribute [rw] force
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  # Whether to force deletion.
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  # @return [Boolean]
@@ -1131,13 +918,6 @@ module Aws::Omics
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  include Aws::Structure
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  end
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1134
- # @note When making an API call, you may pass DeleteWorkflowRequest
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- # data as a hash:
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- #
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- # {
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- # id: "WorkflowId", # required
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- # }
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- #
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  # @!attribute [rw] id
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  # The workflow's ID.
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  # @return [String]
@@ -1152,13 +932,6 @@ module Aws::Omics
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  # A read set.
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  #
1155
- # @note When making an API call, you may pass ExportReadSet
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- # data as a hash:
1157
- #
1158
- # {
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- # read_set_id: "ReadSetId", # required
1160
- # }
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- #
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  # @!attribute [rw] read_set_id
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  # The set's ID.
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  # @return [String]
@@ -1197,15 +970,6 @@ module Aws::Omics
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1198
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  # An read set export job filter.
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  #
1200
- # @note When making an API call, you may pass ExportReadSetFilter
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- # data as a hash:
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- #
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- # {
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- # created_after: Time.now,
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- # created_before: Time.now,
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- # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
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- # }
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- #
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  # @!attribute [rw] created_after
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  # The filter's start date.
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  # @return [Time]
@@ -1320,13 +1084,6 @@ module Aws::Omics
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  class Unknown < FormatOptions; end
1321
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  end
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1323
- # @note When making an API call, you may pass GetAnnotationImportRequest
1324
- # data as a hash:
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- #
1326
- # {
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- # job_id: "ResourceId", # required
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- # }
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- #
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  # @!attribute [rw] job_id
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  # The job's ID.
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  # @return [String]
@@ -1401,13 +1158,6 @@ module Aws::Omics
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  include Aws::Structure
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  end
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1404
- # @note When making an API call, you may pass GetAnnotationStoreRequest
1405
- # data as a hash:
1406
- #
1407
- # {
1408
- # name: "String", # required
1409
- # }
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- #
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  # @!attribute [rw] name
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  # The store's name.
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  # @return [String]
@@ -1497,14 +1247,6 @@ module Aws::Omics
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  include Aws::Structure
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1248
  end
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1500
- # @note When making an API call, you may pass GetReadSetActivationJobRequest
1501
- # data as a hash:
1502
- #
1503
- # {
1504
- # id: "ActivationJobId", # required
1505
- # sequence_store_id: "SequenceStoreId", # required
1506
- # }
1507
- #
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  # @!attribute [rw] id
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  # The job's ID.
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  # @return [String]
@@ -1539,7 +1281,7 @@ module Aws::Omics
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  # @return [String]
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  #
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  # @!attribute [rw] sources
1542
- # The job's sources.
1284
+ # The job's source files.
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  # @return [Array<Types::ActivateReadSetSourceItem>]
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  #
1545
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  # @!attribute [rw] status
@@ -1564,14 +1306,6 @@ module Aws::Omics
1564
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  include Aws::Structure
1565
1307
  end
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1308
 
1567
- # @note When making an API call, you may pass GetReadSetExportJobRequest
1568
- # data as a hash:
1569
- #
1570
- # {
1571
- # id: "ExportJobId", # required
1572
- # sequence_store_id: "SequenceStoreId", # required
1573
- # }
1574
- #
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  # @!attribute [rw] id
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  # The job's ID.
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  # @return [String]
@@ -1636,14 +1370,6 @@ module Aws::Omics
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  include Aws::Structure
1637
1371
  end
1638
1372
 
1639
- # @note When making an API call, you may pass GetReadSetImportJobRequest
1640
- # data as a hash:
1641
- #
1642
- # {
1643
- # id: "ImportJobId", # required
1644
- # sequence_store_id: "SequenceStoreId", # required
1645
- # }
1646
- #
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  # @!attribute [rw] id
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  # The job's ID.
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  # @return [String]
@@ -1682,7 +1408,7 @@ module Aws::Omics
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  # @return [String]
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  #
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  # @!attribute [rw] sources
1685
- # The job's sources.
1411
+ # The job's source files.
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  # @return [Array<Types::ImportReadSetSourceItem>]
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  #
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  # @!attribute [rw] status
@@ -1708,14 +1434,6 @@ module Aws::Omics
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  include Aws::Structure
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  end
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1711
- # @note When making an API call, you may pass GetReadSetMetadataRequest
1712
- # data as a hash:
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- #
1714
- # {
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- # id: "ReadSetId", # required
1716
- # sequence_store_id: "SequenceStoreId", # required
1717
- # }
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- #
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  # @!attribute [rw] id
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  # The read set's ID.
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  # @return [String]
@@ -1805,16 +1523,6 @@ module Aws::Omics
1805
1523
  include Aws::Structure
1806
1524
  end
1807
1525
 
1808
- # @note When making an API call, you may pass GetReadSetRequest
1809
- # data as a hash:
1810
- #
1811
- # {
1812
- # file: "SOURCE1", # accepts SOURCE1, SOURCE2, INDEX
1813
- # id: "ReadSetId", # required
1814
- # part_number: 1, # required
1815
- # sequence_store_id: "SequenceStoreId", # required
1816
- # }
1817
- #
1818
1526
  # @!attribute [rw] file
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  # The file to retrieve.
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  # @return [String]
@@ -1854,14 +1562,6 @@ module Aws::Omics
1854
1562
  include Aws::Structure
1855
1563
  end
1856
1564
 
1857
- # @note When making an API call, you may pass GetReferenceImportJobRequest
1858
- # data as a hash:
1859
- #
1860
- # {
1861
- # id: "ImportJobId", # required
1862
- # reference_store_id: "ReferenceStoreId", # required
1863
- # }
1864
- #
1865
1565
  # @!attribute [rw] id
1866
1566
  # The job's ID.
1867
1567
  # @return [String]
@@ -1900,7 +1600,7 @@ module Aws::Omics
1900
1600
  # @return [String]
1901
1601
  #
1902
1602
  # @!attribute [rw] sources
1903
- # The job's sources.
1603
+ # The job's source files.
1904
1604
  # @return [Array<Types::ImportReferenceSourceItem>]
1905
1605
  #
1906
1606
  # @!attribute [rw] status
@@ -1926,14 +1626,6 @@ module Aws::Omics
1926
1626
  include Aws::Structure
1927
1627
  end
1928
1628
 
1929
- # @note When making an API call, you may pass GetReferenceMetadataRequest
1930
- # data as a hash:
1931
- #
1932
- # {
1933
- # id: "ReferenceId", # required
1934
- # reference_store_id: "ReferenceStoreId", # required
1935
- # }
1936
- #
1937
1629
  # @!attribute [rw] id
1938
1630
  # The reference's ID.
1939
1631
  # @return [String]
@@ -2008,17 +1700,6 @@ module Aws::Omics
2008
1700
  include Aws::Structure
2009
1701
  end
2010
1702
 
2011
- # @note When making an API call, you may pass GetReferenceRequest
2012
- # data as a hash:
2013
- #
2014
- # {
2015
- # file: "SOURCE", # accepts SOURCE, INDEX
2016
- # id: "ReferenceId", # required
2017
- # part_number: 1, # required
2018
- # range: "Range",
2019
- # reference_store_id: "ReferenceStoreId", # required
2020
- # }
2021
- #
2022
1703
  # @!attribute [rw] file
2023
1704
  # The file to retrieve.
2024
1705
  # @return [String]
@@ -2063,13 +1744,6 @@ module Aws::Omics
2063
1744
  include Aws::Structure
2064
1745
  end
2065
1746
 
2066
- # @note When making an API call, you may pass GetReferenceStoreRequest
2067
- # data as a hash:
2068
- #
2069
- # {
2070
- # id: "ReferenceStoreId", # required
2071
- # }
2072
- #
2073
1747
  # @!attribute [rw] id
2074
1748
  # The store's ID.
2075
1749
  # @return [String]
@@ -2119,13 +1793,6 @@ module Aws::Omics
2119
1793
  include Aws::Structure
2120
1794
  end
2121
1795
 
2122
- # @note When making an API call, you may pass GetRunGroupRequest
2123
- # data as a hash:
2124
- #
2125
- # {
2126
- # id: "RunGroupId", # required
2127
- # }
2128
- #
2129
1796
  # @!attribute [rw] id
2130
1797
  # The group's ID.
2131
1798
  # @return [String]
@@ -2155,7 +1822,7 @@ module Aws::Omics
2155
1822
  # @return [Integer]
2156
1823
  #
2157
1824
  # @!attribute [rw] max_duration
2158
- # The group's maximum run duration.
1825
+ # The group's maximum run time in minutes.
2159
1826
  # @return [Integer]
2160
1827
  #
2161
1828
  # @!attribute [rw] max_runs
@@ -2185,14 +1852,6 @@ module Aws::Omics
2185
1852
  include Aws::Structure
2186
1853
  end
2187
1854
 
2188
- # @note When making an API call, you may pass GetRunRequest
2189
- # data as a hash:
2190
- #
2191
- # {
2192
- # export: ["DEFINITION"], # accepts DEFINITION
2193
- # id: "RunId", # required
2194
- # }
2195
- #
2196
1855
  # @!attribute [rw] export
2197
1856
  # The run's export format.
2198
1857
  # @return [Array<String>]
@@ -2287,7 +1946,7 @@ module Aws::Omics
2287
1946
  # @return [Time]
2288
1947
  #
2289
1948
  # @!attribute [rw] storage_capacity
2290
- # The run's storage capacity.
1949
+ # The run's storage capacity in gigabytes.
2291
1950
  # @return [Integer]
2292
1951
  #
2293
1952
  # @!attribute [rw] tags
@@ -2332,14 +1991,6 @@ module Aws::Omics
2332
1991
  include Aws::Structure
2333
1992
  end
2334
1993
 
2335
- # @note When making an API call, you may pass GetRunTaskRequest
2336
- # data as a hash:
2337
- #
2338
- # {
2339
- # id: "RunId", # required
2340
- # task_id: "TaskId", # required
2341
- # }
2342
- #
2343
1994
  # @!attribute [rw] id
2344
1995
  # The task's ID.
2345
1996
  # @return [String]
@@ -2370,7 +2021,7 @@ module Aws::Omics
2370
2021
  # @return [String]
2371
2022
  #
2372
2023
  # @!attribute [rw] memory
2373
- # The task's memory setting.
2024
+ # The task's memory use in gigabytes.
2374
2025
  # @return [Integer]
2375
2026
  #
2376
2027
  # @!attribute [rw] name
@@ -2414,13 +2065,6 @@ module Aws::Omics
2414
2065
  include Aws::Structure
2415
2066
  end
2416
2067
 
2417
- # @note When making an API call, you may pass GetSequenceStoreRequest
2418
- # data as a hash:
2419
- #
2420
- # {
2421
- # id: "SequenceStoreId", # required
2422
- # }
2423
- #
2424
2068
  # @!attribute [rw] id
2425
2069
  # The store's ID.
2426
2070
  # @return [String]
@@ -2470,13 +2114,6 @@ module Aws::Omics
2470
2114
  include Aws::Structure
2471
2115
  end
2472
2116
 
2473
- # @note When making an API call, you may pass GetVariantImportRequest
2474
- # data as a hash:
2475
- #
2476
- # {
2477
- # job_id: "ResourceId", # required
2478
- # }
2479
- #
2480
2117
  # @!attribute [rw] job_id
2481
2118
  # The job's ID.
2482
2119
  # @return [String]
@@ -2546,13 +2183,6 @@ module Aws::Omics
2546
2183
  include Aws::Structure
2547
2184
  end
2548
2185
 
2549
- # @note When making an API call, you may pass GetVariantStoreRequest
2550
- # data as a hash:
2551
- #
2552
- # {
2553
- # name: "String", # required
2554
- # }
2555
- #
2556
2186
  # @!attribute [rw] name
2557
2187
  # The store's name.
2558
2188
  # @return [String]
@@ -2632,15 +2262,6 @@ module Aws::Omics
2632
2262
  include Aws::Structure
2633
2263
  end
2634
2264
 
2635
- # @note When making an API call, you may pass GetWorkflowRequest
2636
- # data as a hash:
2637
- #
2638
- # {
2639
- # export: ["DEFINITION"], # accepts DEFINITION
2640
- # id: "WorkflowId", # required
2641
- # type: "PRIVATE", # accepts PRIVATE
2642
- # }
2643
- #
2644
2265
  # @!attribute [rw] export
2645
2266
  # The export format for the workflow.
2646
2267
  # @return [Array<String>]
@@ -2712,7 +2333,7 @@ module Aws::Omics
2712
2333
  # @return [String]
2713
2334
  #
2714
2335
  # @!attribute [rw] storage_capacity
2715
- # The workflow's storage capacity.
2336
+ # The workflow's storage capacity in gigabytes.
2716
2337
  # @return [Integer]
2717
2338
  #
2718
2339
  # @!attribute [rw] tags
@@ -2747,15 +2368,6 @@ module Aws::Omics
2747
2368
 
2748
2369
  # A filter for import read set jobs.
2749
2370
  #
2750
- # @note When making an API call, you may pass ImportReadSetFilter
2751
- # data as a hash:
2752
- #
2753
- # {
2754
- # created_after: Time.now,
2755
- # created_before: Time.now,
2756
- # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
2757
- # }
2758
- #
2759
2371
  # @!attribute [rw] created_after
2760
2372
  # The filter's start date.
2761
2373
  # @return [Time]
@@ -2883,15 +2495,6 @@ module Aws::Omics
2883
2495
 
2884
2496
  # A filter for import references.
2885
2497
  #
2886
- # @note When making an API call, you may pass ImportReferenceFilter
2887
- # data as a hash:
2888
- #
2889
- # {
2890
- # created_after: Time.now,
2891
- # created_before: Time.now,
2892
- # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
2893
- # }
2894
- #
2895
2498
  # @!attribute [rw] created_after
2896
2499
  # The filter's start date.
2897
2500
  # @return [Time]
@@ -3007,14 +2610,6 @@ module Aws::Omics
3007
2610
 
3008
2611
  # A filter for annotation import jobs.
3009
2612
  #
3010
- # @note When making an API call, you may pass ListAnnotationImportJobsFilter
3011
- # data as a hash:
3012
- #
3013
- # {
3014
- # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLED, COMPLETED, FAILED
3015
- # store_name: "String",
3016
- # }
3017
- #
3018
2613
  # @!attribute [rw] status
3019
2614
  # A status to filter on.
3020
2615
  # @return [String]
@@ -3032,19 +2627,6 @@ module Aws::Omics
3032
2627
  include Aws::Structure
3033
2628
  end
3034
2629
 
3035
- # @note When making an API call, you may pass ListAnnotationImportJobsRequest
3036
- # data as a hash:
3037
- #
3038
- # {
3039
- # filter: {
3040
- # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLED, COMPLETED, FAILED
3041
- # store_name: "String",
3042
- # },
3043
- # ids: ["ResourceIdentifier"],
3044
- # max_results: 1,
3045
- # next_token: "ListAnnotationImportJobsRequestNextTokenString",
3046
- # }
3047
- #
3048
2630
  # @!attribute [rw] filter
3049
2631
  # A filter to apply to the list.
3050
2632
  # @return [Types::ListAnnotationImportJobsFilter]
@@ -3092,13 +2674,6 @@ module Aws::Omics
3092
2674
 
3093
2675
  # A filter for annotation stores.
3094
2676
  #
3095
- # @note When making an API call, you may pass ListAnnotationStoresFilter
3096
- # data as a hash:
3097
- #
3098
- # {
3099
- # status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED
3100
- # }
3101
- #
3102
2677
  # @!attribute [rw] status
3103
2678
  # A status to filter on.
3104
2679
  # @return [String]
@@ -3111,18 +2686,6 @@ module Aws::Omics
3111
2686
  include Aws::Structure
3112
2687
  end
3113
2688
 
3114
- # @note When making an API call, you may pass ListAnnotationStoresRequest
3115
- # data as a hash:
3116
- #
3117
- # {
3118
- # filter: {
3119
- # status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED
3120
- # },
3121
- # ids: ["ResourceIdentifier"],
3122
- # max_results: 1,
3123
- # next_token: "ListAnnotationStoresRequestNextTokenString",
3124
- # }
3125
- #
3126
2689
  # @!attribute [rw] filter
3127
2690
  # A filter to apply to the list.
3128
2691
  # @return [Types::ListAnnotationStoresFilter]
@@ -3168,20 +2731,6 @@ module Aws::Omics
3168
2731
  include Aws::Structure
3169
2732
  end
3170
2733
 
3171
- # @note When making an API call, you may pass ListReadSetActivationJobsRequest
3172
- # data as a hash:
3173
- #
3174
- # {
3175
- # filter: {
3176
- # created_after: Time.now,
3177
- # created_before: Time.now,
3178
- # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
3179
- # },
3180
- # max_results: 1,
3181
- # next_token: "NextToken",
3182
- # sequence_store_id: "SequenceStoreId", # required
3183
- # }
3184
- #
3185
2734
  # @!attribute [rw] filter
3186
2735
  # A filter to apply to the list.
3187
2736
  # @return [Types::ActivateReadSetFilter]
@@ -3228,20 +2777,6 @@ module Aws::Omics
3228
2777
  include Aws::Structure
3229
2778
  end
3230
2779
 
3231
- # @note When making an API call, you may pass ListReadSetExportJobsRequest
3232
- # data as a hash:
3233
- #
3234
- # {
3235
- # filter: {
3236
- # created_after: Time.now,
3237
- # created_before: Time.now,
3238
- # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
3239
- # },
3240
- # max_results: 1,
3241
- # next_token: "NextToken",
3242
- # sequence_store_id: "SequenceStoreId", # required
3243
- # }
3244
- #
3245
2780
  # @!attribute [rw] filter
3246
2781
  # A filter to apply to the list.
3247
2782
  # @return [Types::ExportReadSetFilter]
@@ -3287,20 +2822,6 @@ module Aws::Omics
3287
2822
  include Aws::Structure
3288
2823
  end
3289
2824
 
3290
- # @note When making an API call, you may pass ListReadSetImportJobsRequest
3291
- # data as a hash:
3292
- #
3293
- # {
3294
- # filter: {
3295
- # created_after: Time.now,
3296
- # created_before: Time.now,
3297
- # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
3298
- # },
3299
- # max_results: 1,
3300
- # next_token: "NextToken",
3301
- # sequence_store_id: "SequenceStoreId", # required
3302
- # }
3303
- #
3304
2825
  # @!attribute [rw] filter
3305
2826
  # A filter to apply to the list.
3306
2827
  # @return [Types::ImportReadSetFilter]
@@ -3346,22 +2867,6 @@ module Aws::Omics
3346
2867
  include Aws::Structure
3347
2868
  end
3348
2869
 
3349
- # @note When making an API call, you may pass ListReadSetsRequest
3350
- # data as a hash:
3351
- #
3352
- # {
3353
- # filter: {
3354
- # created_after: Time.now,
3355
- # created_before: Time.now,
3356
- # name: "ReadSetName",
3357
- # reference_arn: "ReferenceArn",
3358
- # status: "ARCHIVED", # accepts ARCHIVED, ACTIVATING, ACTIVE, DELETING, DELETED
3359
- # },
3360
- # max_results: 1,
3361
- # next_token: "NextToken",
3362
- # sequence_store_id: "SequenceStoreId", # required
3363
- # }
3364
- #
3365
2870
  # @!attribute [rw] filter
3366
2871
  # A filter to apply to the list.
3367
2872
  # @return [Types::ReadSetFilter]
@@ -3407,20 +2912,6 @@ module Aws::Omics
3407
2912
  include Aws::Structure
3408
2913
  end
3409
2914
 
3410
- # @note When making an API call, you may pass ListReferenceImportJobsRequest
3411
- # data as a hash:
3412
- #
3413
- # {
3414
- # filter: {
3415
- # created_after: Time.now,
3416
- # created_before: Time.now,
3417
- # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
3418
- # },
3419
- # max_results: 1,
3420
- # next_token: "NextToken",
3421
- # reference_store_id: "ReferenceStoreId", # required
3422
- # }
3423
- #
3424
2915
  # @!attribute [rw] filter
3425
2916
  # A filter to apply to the list.
3426
2917
  # @return [Types::ImportReferenceFilter]
@@ -3466,19 +2957,6 @@ module Aws::Omics
3466
2957
  include Aws::Structure
3467
2958
  end
3468
2959
 
3469
- # @note When making an API call, you may pass ListReferenceStoresRequest
3470
- # data as a hash:
3471
- #
3472
- # {
3473
- # filter: {
3474
- # created_after: Time.now,
3475
- # created_before: Time.now,
3476
- # name: "ReferenceStoreName",
3477
- # },
3478
- # max_results: 1,
3479
- # next_token: "NextToken",
3480
- # }
3481
- #
3482
2960
  # @!attribute [rw] filter
3483
2961
  # A filter to apply to the list.
3484
2962
  # @return [Types::ReferenceStoreFilter]
@@ -3519,21 +2997,6 @@ module Aws::Omics
3519
2997
  include Aws::Structure
3520
2998
  end
3521
2999
 
3522
- # @note When making an API call, you may pass ListReferencesRequest
3523
- # data as a hash:
3524
- #
3525
- # {
3526
- # filter: {
3527
- # created_after: Time.now,
3528
- # created_before: Time.now,
3529
- # md5: "Md5",
3530
- # name: "ReferenceName",
3531
- # },
3532
- # max_results: 1,
3533
- # next_token: "NextToken",
3534
- # reference_store_id: "ReferenceStoreId", # required
3535
- # }
3536
- #
3537
3000
  # @!attribute [rw] filter
3538
3001
  # A filter to apply to the list.
3539
3002
  # @return [Types::ReferenceFilter]
@@ -3579,15 +3042,6 @@ module Aws::Omics
3579
3042
  include Aws::Structure
3580
3043
  end
3581
3044
 
3582
- # @note When making an API call, you may pass ListRunGroupsRequest
3583
- # data as a hash:
3584
- #
3585
- # {
3586
- # max_results: 1,
3587
- # name: "RunGroupName",
3588
- # starting_token: "RunGroupListToken",
3589
- # }
3590
- #
3591
3045
  # @!attribute [rw] max_results
3592
3046
  # The maximum number of run groups to return in one page of results.
3593
3047
  # @return [Integer]
@@ -3628,16 +3082,6 @@ module Aws::Omics
3628
3082
  include Aws::Structure
3629
3083
  end
3630
3084
 
3631
- # @note When making an API call, you may pass ListRunTasksRequest
3632
- # data as a hash:
3633
- #
3634
- # {
3635
- # id: "RunId", # required
3636
- # max_results: 1,
3637
- # starting_token: "TaskListToken",
3638
- # status: "PENDING", # accepts PENDING, STARTING, RUNNING, STOPPING, COMPLETED, CANCELLED, FAILED
3639
- # }
3640
- #
3641
3085
  # @!attribute [rw] id
3642
3086
  # The run's ID.
3643
3087
  # @return [String]
@@ -3683,16 +3127,6 @@ module Aws::Omics
3683
3127
  include Aws::Structure
3684
3128
  end
3685
3129
 
3686
- # @note When making an API call, you may pass ListRunsRequest
3687
- # data as a hash:
3688
- #
3689
- # {
3690
- # max_results: 1,
3691
- # name: "RunName",
3692
- # run_group_id: "RunGroupId",
3693
- # starting_token: "RunListToken",
3694
- # }
3695
- #
3696
3130
  # @!attribute [rw] max_results
3697
3131
  # The maximum number of runs to return in one page of results.
3698
3132
  # @return [Integer]
@@ -3738,19 +3172,6 @@ module Aws::Omics
3738
3172
  include Aws::Structure
3739
3173
  end
3740
3174
 
3741
- # @note When making an API call, you may pass ListSequenceStoresRequest
3742
- # data as a hash:
3743
- #
3744
- # {
3745
- # filter: {
3746
- # created_after: Time.now,
3747
- # created_before: Time.now,
3748
- # name: "SequenceStoreName",
3749
- # },
3750
- # max_results: 1,
3751
- # next_token: "NextToken",
3752
- # }
3753
- #
3754
3175
  # @!attribute [rw] filter
3755
3176
  # A filter to apply to the list.
3756
3177
  # @return [Types::SequenceStoreFilter]
@@ -3791,13 +3212,6 @@ module Aws::Omics
3791
3212
  include Aws::Structure
3792
3213
  end
3793
3214
 
3794
- # @note When making an API call, you may pass ListTagsForResourceRequest
3795
- # data as a hash:
3796
- #
3797
- # {
3798
- # resource_arn: "TagArn", # required
3799
- # }
3800
- #
3801
3215
  # @!attribute [rw] resource_arn
3802
3216
  # The resource's ARN.
3803
3217
  # @return [String]
@@ -3824,14 +3238,6 @@ module Aws::Omics
3824
3238
 
3825
3239
  # A filter for variant import jobs.
3826
3240
  #
3827
- # @note When making an API call, you may pass ListVariantImportJobsFilter
3828
- # data as a hash:
3829
- #
3830
- # {
3831
- # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLED, COMPLETED, FAILED
3832
- # store_name: "String",
3833
- # }
3834
- #
3835
3241
  # @!attribute [rw] status
3836
3242
  # A status to filter on.
3837
3243
  # @return [String]
@@ -3849,19 +3255,6 @@ module Aws::Omics
3849
3255
  include Aws::Structure
3850
3256
  end
3851
3257
 
3852
- # @note When making an API call, you may pass ListVariantImportJobsRequest
3853
- # data as a hash:
3854
- #
3855
- # {
3856
- # filter: {
3857
- # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLED, COMPLETED, FAILED
3858
- # store_name: "String",
3859
- # },
3860
- # ids: ["ResourceIdentifier"],
3861
- # max_results: 1,
3862
- # next_token: "ListVariantImportJobsRequestNextTokenString",
3863
- # }
3864
- #
3865
3258
  # @!attribute [rw] filter
3866
3259
  # A filter to apply to the list.
3867
3260
  # @return [Types::ListVariantImportJobsFilter]
@@ -3909,13 +3302,6 @@ module Aws::Omics
3909
3302
 
3910
3303
  # A filter for variant stores.
3911
3304
  #
3912
- # @note When making an API call, you may pass ListVariantStoresFilter
3913
- # data as a hash:
3914
- #
3915
- # {
3916
- # status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED
3917
- # }
3918
- #
3919
3305
  # @!attribute [rw] status
3920
3306
  # A status to filter on.
3921
3307
  # @return [String]
@@ -3928,18 +3314,6 @@ module Aws::Omics
3928
3314
  include Aws::Structure
3929
3315
  end
3930
3316
 
3931
- # @note When making an API call, you may pass ListVariantStoresRequest
3932
- # data as a hash:
3933
- #
3934
- # {
3935
- # filter: {
3936
- # status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED
3937
- # },
3938
- # ids: ["ResourceIdentifier"],
3939
- # max_results: 1,
3940
- # next_token: "ListVariantStoresRequestNextTokenString",
3941
- # }
3942
- #
3943
3317
  # @!attribute [rw] filter
3944
3318
  # A filter to apply to the list.
3945
3319
  # @return [Types::ListVariantStoresFilter]
@@ -3985,16 +3359,6 @@ module Aws::Omics
3985
3359
  include Aws::Structure
3986
3360
  end
3987
3361
 
3988
- # @note When making an API call, you may pass ListWorkflowsRequest
3989
- # data as a hash:
3990
- #
3991
- # {
3992
- # max_results: 1,
3993
- # name: "WorkflowName",
3994
- # starting_token: "WorkflowListToken",
3995
- # type: "PRIVATE", # accepts PRIVATE
3996
- # }
3997
- #
3998
3362
  # @!attribute [rw] max_results
3999
3363
  # The maximum number of workflows to return in one page of results.
4000
3364
  # @return [Integer]
@@ -4055,21 +3419,6 @@ module Aws::Omics
4055
3419
 
4056
3420
  # Read options for an annotation import job.
4057
3421
  #
4058
- # @note When making an API call, you may pass ReadOptions
4059
- # data as a hash:
4060
- #
4061
- # {
4062
- # comment: "CommentChar",
4063
- # encoding: "Encoding",
4064
- # escape: "EscapeChar",
4065
- # escape_quotes: false,
4066
- # header: false,
4067
- # line_sep: "LineSep",
4068
- # quote: "Quote",
4069
- # quote_all: false,
4070
- # sep: "Separator",
4071
- # }
4072
- #
4073
3422
  # @!attribute [rw] comment
4074
3423
  # The file's comment character.
4075
3424
  # @return [String]
@@ -4173,17 +3522,6 @@ module Aws::Omics
4173
3522
 
4174
3523
  # A filter for read sets.
4175
3524
  #
4176
- # @note When making an API call, you may pass ReadSetFilter
4177
- # data as a hash:
4178
- #
4179
- # {
4180
- # created_after: Time.now,
4181
- # created_before: Time.now,
4182
- # name: "ReadSetName",
4183
- # reference_arn: "ReferenceArn",
4184
- # status: "ARCHIVED", # accepts ARCHIVED, ACTIVATING, ACTIVE, DELETING, DELETED
4185
- # }
4186
- #
4187
3525
  # @!attribute [rw] created_after
4188
3526
  # The filter's start date.
4189
3527
  # @return [Time]
@@ -4306,16 +3644,6 @@ module Aws::Omics
4306
3644
 
4307
3645
  # A filter for references.
4308
3646
  #
4309
- # @note When making an API call, you may pass ReferenceFilter
4310
- # data as a hash:
4311
- #
4312
- # {
4313
- # created_after: Time.now,
4314
- # created_before: Time.now,
4315
- # md5: "Md5",
4316
- # name: "ReferenceName",
4317
- # }
4318
- #
4319
3647
  # @!attribute [rw] created_after
4320
3648
  # The filter's start date.
4321
3649
  # @return [Time]
@@ -4461,15 +3789,6 @@ module Aws::Omics
4461
3789
 
4462
3790
  # A filter for reference stores.
4463
3791
  #
4464
- # @note When making an API call, you may pass ReferenceStoreFilter
4465
- # data as a hash:
4466
- #
4467
- # {
4468
- # created_after: Time.now,
4469
- # created_before: Time.now,
4470
- # name: "ReferenceStoreName",
4471
- # }
4472
- #
4473
3792
  # @!attribute [rw] created_after
4474
3793
  # The filter's start date.
4475
3794
  # @return [Time]
@@ -4537,7 +3856,7 @@ module Aws::Omics
4537
3856
  # @return [Integer]
4538
3857
  #
4539
3858
  # @!attribute [rw] max_duration
4540
- # The group's maximum duration setting.
3859
+ # The group's maximum duration setting in minutes.
4541
3860
  # @return [Integer]
4542
3861
  #
4543
3862
  # @!attribute [rw] max_runs
@@ -4691,15 +4010,6 @@ module Aws::Omics
4691
4010
 
4692
4011
  # A filter for a sequence store.
4693
4012
  #
4694
- # @note When making an API call, you may pass SequenceStoreFilter
4695
- # data as a hash:
4696
- #
4697
- # {
4698
- # created_after: Time.now,
4699
- # created_before: Time.now,
4700
- # name: "SequenceStoreName",
4701
- # }
4702
- #
4703
4013
  # @!attribute [rw] created_after
4704
4014
  # The filter's start date.
4705
4015
  # @return [Time]
@@ -4737,14 +4047,6 @@ module Aws::Omics
4737
4047
 
4738
4048
  # Source files for a sequence.
4739
4049
  #
4740
- # @note When making an API call, you may pass SourceFiles
4741
- # data as a hash:
4742
- #
4743
- # {
4744
- # source1: "S3Uri", # required
4745
- # source2: "S3Uri",
4746
- # }
4747
- #
4748
4050
  # @!attribute [rw] source1
4749
4051
  # The location of the first file in Amazon S3.
4750
4052
  # @return [String]
@@ -4764,14 +4066,6 @@ module Aws::Omics
4764
4066
 
4765
4067
  # Server-side encryption (SSE) settings for a store.
4766
4068
  #
4767
- # @note When making an API call, you may pass SseConfig
4768
- # data as a hash:
4769
- #
4770
- # {
4771
- # key_arn: "SseConfigKeyArnString",
4772
- # type: "KMS", # required, accepts KMS
4773
- # }
4774
- #
4775
4069
  # @!attribute [rw] key_arn
4776
4070
  # An encryption key ARN.
4777
4071
  # @return [String]
@@ -4789,39 +4083,6 @@ module Aws::Omics
4789
4083
  include Aws::Structure
4790
4084
  end
4791
4085
 
4792
- # @note When making an API call, you may pass StartAnnotationImportRequest
4793
- # data as a hash:
4794
- #
4795
- # {
4796
- # destination_name: "StoreName", # required
4797
- # format_options: {
4798
- # tsv_options: {
4799
- # read_options: {
4800
- # comment: "CommentChar",
4801
- # encoding: "Encoding",
4802
- # escape: "EscapeChar",
4803
- # escape_quotes: false,
4804
- # header: false,
4805
- # line_sep: "LineSep",
4806
- # quote: "Quote",
4807
- # quote_all: false,
4808
- # sep: "Separator",
4809
- # },
4810
- # },
4811
- # vcf_options: {
4812
- # ignore_filter_field: false,
4813
- # ignore_qual_field: false,
4814
- # },
4815
- # },
4816
- # items: [ # required
4817
- # {
4818
- # source: "S3Uri", # required
4819
- # },
4820
- # ],
4821
- # role_arn: "Arn", # required
4822
- # run_left_normalization: false,
4823
- # }
4824
- #
4825
4086
  # @!attribute [rw] destination_name
4826
4087
  # A destination annotation store for the job.
4827
4088
  # @return [String]
@@ -4866,19 +4127,6 @@ module Aws::Omics
4866
4127
  include Aws::Structure
4867
4128
  end
4868
4129
 
4869
- # @note When making an API call, you may pass StartReadSetActivationJobRequest
4870
- # data as a hash:
4871
- #
4872
- # {
4873
- # client_token: "ClientToken",
4874
- # sequence_store_id: "SequenceStoreId", # required
4875
- # sources: [ # required
4876
- # {
4877
- # read_set_id: "ReadSetId", # required
4878
- # },
4879
- # ],
4880
- # }
4881
- #
4882
4130
  # @!attribute [rw] client_token
4883
4131
  # To ensure that jobs don't run multiple times, specify a unique
4884
4132
  # token for each job.
@@ -4889,7 +4137,7 @@ module Aws::Omics
4889
4137
  # @return [String]
4890
4138
  #
4891
4139
  # @!attribute [rw] sources
4892
- # The job's sources.
4140
+ # The job's source files.
4893
4141
  # @return [Array<Types::StartReadSetActivationJobSourceItem>]
4894
4142
  #
4895
4143
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetActivationJobRequest AWS API Documentation
@@ -4931,13 +4179,6 @@ module Aws::Omics
4931
4179
 
4932
4180
  # A source for a read set activation job.
4933
4181
  #
4934
- # @note When making an API call, you may pass StartReadSetActivationJobSourceItem
4935
- # data as a hash:
4936
- #
4937
- # {
4938
- # read_set_id: "ReadSetId", # required
4939
- # }
4940
- #
4941
4182
  # @!attribute [rw] read_set_id
4942
4183
  # The source's read set ID.
4943
4184
  # @return [String]
@@ -4950,21 +4191,6 @@ module Aws::Omics
4950
4191
  include Aws::Structure
4951
4192
  end
4952
4193
 
4953
- # @note When making an API call, you may pass StartReadSetExportJobRequest
4954
- # data as a hash:
4955
- #
4956
- # {
4957
- # client_token: "ClientToken",
4958
- # destination: "S3Destination", # required
4959
- # role_arn: "RoleArn", # required
4960
- # sequence_store_id: "SequenceStoreId", # required
4961
- # sources: [ # required
4962
- # {
4963
- # read_set_id: "ReadSetId", # required
4964
- # },
4965
- # ],
4966
- # }
4967
- #
4968
4194
  # @!attribute [rw] client_token
4969
4195
  # To ensure that jobs don't run multiple times, specify a unique
4970
4196
  # token for each job.
@@ -4983,7 +4209,7 @@ module Aws::Omics
4983
4209
  # @return [String]
4984
4210
  #
4985
4211
  # @!attribute [rw] sources
4986
- # Sources for the job.
4212
+ # The job's source files.
4987
4213
  # @return [Array<Types::ExportReadSet>]
4988
4214
  #
4989
4215
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetExportJobRequest AWS API Documentation
@@ -5030,33 +4256,6 @@ module Aws::Omics
5030
4256
  include Aws::Structure
5031
4257
  end
5032
4258
 
5033
- # @note When making an API call, you may pass StartReadSetImportJobRequest
5034
- # data as a hash:
5035
- #
5036
- # {
5037
- # client_token: "ClientToken",
5038
- # role_arn: "RoleArn", # required
5039
- # sequence_store_id: "SequenceStoreId", # required
5040
- # sources: [ # required
5041
- # {
5042
- # description: "ReadSetDescription",
5043
- # generated_from: "GeneratedFrom",
5044
- # name: "ReadSetName",
5045
- # reference_arn: "ReferenceArn", # required
5046
- # sample_id: "SampleId", # required
5047
- # source_file_type: "FASTQ", # required, accepts FASTQ, BAM, CRAM
5048
- # source_files: { # required
5049
- # source1: "S3Uri", # required
5050
- # source2: "S3Uri",
5051
- # },
5052
- # subject_id: "SubjectId", # required
5053
- # tags: {
5054
- # "TagKey" => "TagValue",
5055
- # },
5056
- # },
5057
- # ],
5058
- # }
5059
- #
5060
4259
  # @!attribute [rw] client_token
5061
4260
  # To ensure that jobs don't run multiple times, specify a unique
5062
4261
  # token for each job.
@@ -5071,7 +4270,7 @@ module Aws::Omics
5071
4270
  # @return [String]
5072
4271
  #
5073
4272
  # @!attribute [rw] sources
5074
- # Source files to import.
4273
+ # The job's source files.
5075
4274
  # @return [Array<Types::StartReadSetImportJobSourceItem>]
5076
4275
  #
5077
4276
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetImportJobRequest AWS API Documentation
@@ -5119,26 +4318,6 @@ module Aws::Omics
5119
4318
 
5120
4319
  # A source for a read set import job.
5121
4320
  #
5122
- # @note When making an API call, you may pass StartReadSetImportJobSourceItem
5123
- # data as a hash:
5124
- #
5125
- # {
5126
- # description: "ReadSetDescription",
5127
- # generated_from: "GeneratedFrom",
5128
- # name: "ReadSetName",
5129
- # reference_arn: "ReferenceArn", # required
5130
- # sample_id: "SampleId", # required
5131
- # source_file_type: "FASTQ", # required, accepts FASTQ, BAM, CRAM
5132
- # source_files: { # required
5133
- # source1: "S3Uri", # required
5134
- # source2: "S3Uri",
5135
- # },
5136
- # subject_id: "SubjectId", # required
5137
- # tags: {
5138
- # "TagKey" => "TagValue",
5139
- # },
5140
- # }
5141
- #
5142
4321
  # @!attribute [rw] description
5143
4322
  # The source's description.
5144
4323
  # @return [String]
@@ -5191,25 +4370,6 @@ module Aws::Omics
5191
4370
  include Aws::Structure
5192
4371
  end
5193
4372
 
5194
- # @note When making an API call, you may pass StartReferenceImportJobRequest
5195
- # data as a hash:
5196
- #
5197
- # {
5198
- # client_token: "ClientToken",
5199
- # reference_store_id: "ReferenceStoreId", # required
5200
- # role_arn: "RoleArn", # required
5201
- # sources: [ # required
5202
- # {
5203
- # description: "ReferenceDescription",
5204
- # name: "ReferenceName", # required
5205
- # source_file: "S3Uri", # required
5206
- # tags: {
5207
- # "TagKey" => "TagValue",
5208
- # },
5209
- # },
5210
- # ],
5211
- # }
5212
- #
5213
4373
  # @!attribute [rw] client_token
5214
4374
  # To ensure that jobs don't run multiple times, specify a unique
5215
4375
  # token for each job.
@@ -5224,7 +4384,7 @@ module Aws::Omics
5224
4384
  # @return [String]
5225
4385
  #
5226
4386
  # @!attribute [rw] sources
5227
- # Sources for the job.
4387
+ # The job's source files.
5228
4388
  # @return [Array<Types::StartReferenceImportJobSourceItem>]
5229
4389
  #
5230
4390
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReferenceImportJobRequest AWS API Documentation
@@ -5272,18 +4432,6 @@ module Aws::Omics
5272
4432
 
5273
4433
  # A source for a reference import job.
5274
4434
  #
5275
- # @note When making an API call, you may pass StartReferenceImportJobSourceItem
5276
- # data as a hash:
5277
- #
5278
- # {
5279
- # description: "ReferenceDescription",
5280
- # name: "ReferenceName", # required
5281
- # source_file: "S3Uri", # required
5282
- # tags: {
5283
- # "TagKey" => "TagValue",
5284
- # },
5285
- # }
5286
- #
5287
4435
  # @!attribute [rw] description
5288
4436
  # The source's description.
5289
4437
  # @return [String]
@@ -5311,28 +4459,6 @@ module Aws::Omics
5311
4459
  include Aws::Structure
5312
4460
  end
5313
4461
 
5314
- # @note When making an API call, you may pass StartRunRequest
5315
- # data as a hash:
5316
- #
5317
- # {
5318
- # log_level: "OFF", # accepts OFF, FATAL, ERROR, ALL
5319
- # name: "RunName",
5320
- # output_uri: "RunOutputUri",
5321
- # parameters: {
5322
- # },
5323
- # priority: 1,
5324
- # request_id: "RunRequestId", # required
5325
- # role_arn: "RunRoleArn", # required
5326
- # run_group_id: "RunGroupId",
5327
- # run_id: "RunId",
5328
- # storage_capacity: 1,
5329
- # tags: {
5330
- # "TagKey" => "TagValue",
5331
- # },
5332
- # workflow_id: "WorkflowId",
5333
- # workflow_type: "PRIVATE", # accepts PRIVATE
5334
- # }
5335
- #
5336
4462
  # @!attribute [rw] log_level
5337
4463
  # A log level for the run.
5338
4464
  # @return [String]
@@ -5354,7 +4480,8 @@ module Aws::Omics
5354
4480
  # @return [Integer]
5355
4481
  #
5356
4482
  # @!attribute [rw] request_id
5357
- # A request ID for the run.
4483
+ # To ensure that requests don't run multiple times, specify a unique
4484
+ # ID for each request.
5358
4485
  #
5359
4486
  # **A suitable default value is auto-generated.** You should normally
5360
4487
  # not need to pass this option.
@@ -5373,7 +4500,7 @@ module Aws::Omics
5373
4500
  # @return [String]
5374
4501
  #
5375
4502
  # @!attribute [rw] storage_capacity
5376
- # A storage capacity for the run.
4503
+ # A storage capacity for the run in gigabytes.
5377
4504
  # @return [Integer]
5378
4505
  #
5379
4506
  # @!attribute [rw] tags
@@ -5435,20 +4562,6 @@ module Aws::Omics
5435
4562
  include Aws::Structure
5436
4563
  end
5437
4564
 
5438
- # @note When making an API call, you may pass StartVariantImportRequest
5439
- # data as a hash:
5440
- #
5441
- # {
5442
- # destination_name: "StoreName", # required
5443
- # items: [ # required
5444
- # {
5445
- # source: "S3Uri", # required
5446
- # },
5447
- # ],
5448
- # role_arn: "Arn", # required
5449
- # run_left_normalization: false,
5450
- # }
5451
- #
5452
4565
  # @!attribute [rw] destination_name
5453
4566
  # The destination variant store for the job.
5454
4567
  # @return [String]
@@ -5511,16 +4624,6 @@ module Aws::Omics
5511
4624
  class Unknown < StoreOptions; end
5512
4625
  end
5513
4626
 
5514
- # @note When making an API call, you may pass TagResourceRequest
5515
- # data as a hash:
5516
- #
5517
- # {
5518
- # resource_arn: "TagArn", # required
5519
- # tags: { # required
5520
- # "TagKey" => "TagValue",
5521
- # },
5522
- # }
5523
- #
5524
4627
  # @!attribute [rw] resource_arn
5525
4628
  # The resource's ARN.
5526
4629
  # @return [String]
@@ -5553,7 +4656,7 @@ module Aws::Omics
5553
4656
  # @return [Time]
5554
4657
  #
5555
4658
  # @!attribute [rw] memory
5556
- # The task's memory.
4659
+ # The task's memory use in gigabyes.
5557
4660
  # @return [Integer]
5558
4661
  #
5559
4662
  # @!attribute [rw] name
@@ -5606,23 +4709,6 @@ module Aws::Omics
5606
4709
 
5607
4710
  # Formatting options for a TSV file.
5608
4711
  #
5609
- # @note When making an API call, you may pass TsvOptions
5610
- # data as a hash:
5611
- #
5612
- # {
5613
- # read_options: {
5614
- # comment: "CommentChar",
5615
- # encoding: "Encoding",
5616
- # escape: "EscapeChar",
5617
- # escape_quotes: false,
5618
- # header: false,
5619
- # line_sep: "LineSep",
5620
- # quote: "Quote",
5621
- # quote_all: false,
5622
- # sep: "Separator",
5623
- # },
5624
- # }
5625
- #
5626
4712
  # @!attribute [rw] read_options
5627
4713
  # The file's read options.
5628
4714
  # @return [Types::ReadOptions]
@@ -5637,21 +4723,6 @@ module Aws::Omics
5637
4723
 
5638
4724
  # File settings for a TSV store.
5639
4725
  #
5640
- # @note When making an API call, you may pass TsvStoreOptions
5641
- # data as a hash:
5642
- #
5643
- # {
5644
- # annotation_type: "GENERIC", # accepts GENERIC, CHR_POS, CHR_POS_REF_ALT, CHR_START_END_ONE_BASE, CHR_START_END_REF_ALT_ONE_BASE, CHR_START_END_ZERO_BASE, CHR_START_END_REF_ALT_ZERO_BASE
5645
- # format_to_header: {
5646
- # "CHR" => "FormatToHeaderValueString",
5647
- # },
5648
- # schema: [
5649
- # {
5650
- # "String" => "LONG", # accepts LONG, INT, STRING, FLOAT, DOUBLE, BOOLEAN
5651
- # },
5652
- # ],
5653
- # }
5654
- #
5655
4726
  # @!attribute [rw] annotation_type
5656
4727
  # The store's annotation type.
5657
4728
  # @return [String]
@@ -5674,14 +4745,6 @@ module Aws::Omics
5674
4745
  include Aws::Structure
5675
4746
  end
5676
4747
 
5677
- # @note When making an API call, you may pass UntagResourceRequest
5678
- # data as a hash:
5679
- #
5680
- # {
5681
- # resource_arn: "TagArn", # required
5682
- # tag_keys: ["TagKey"], # required
5683
- # }
5684
- #
5685
4748
  # @!attribute [rw] resource_arn
5686
4749
  # The resource's ARN.
5687
4750
  # @return [String]
@@ -5703,14 +4766,6 @@ module Aws::Omics
5703
4766
  #
5704
4767
  class UntagResourceResponse < Aws::EmptyStructure; end
5705
4768
 
5706
- # @note When making an API call, you may pass UpdateAnnotationStoreRequest
5707
- # data as a hash:
5708
- #
5709
- # {
5710
- # description: "StoreDescription",
5711
- # name: "String", # required
5712
- # }
5713
- #
5714
4769
  # @!attribute [rw] description
5715
4770
  # A description for the store.
5716
4771
  # @return [String]
@@ -5780,17 +4835,6 @@ module Aws::Omics
5780
4835
  include Aws::Structure
5781
4836
  end
5782
4837
 
5783
- # @note When making an API call, you may pass UpdateRunGroupRequest
5784
- # data as a hash:
5785
- #
5786
- # {
5787
- # id: "RunGroupId", # required
5788
- # max_cpus: 1,
5789
- # max_duration: 1,
5790
- # max_runs: 1,
5791
- # name: "RunGroupName",
5792
- # }
5793
- #
5794
4838
  # @!attribute [rw] id
5795
4839
  # The group's ID.
5796
4840
  # @return [String]
@@ -5800,7 +4844,7 @@ module Aws::Omics
5800
4844
  # @return [Integer]
5801
4845
  #
5802
4846
  # @!attribute [rw] max_duration
5803
- # The maximum amount of time to run.
4847
+ # A maximum run time for the group in minutes.
5804
4848
  # @return [Integer]
5805
4849
  #
5806
4850
  # @!attribute [rw] max_runs
@@ -5823,14 +4867,6 @@ module Aws::Omics
5823
4867
  include Aws::Structure
5824
4868
  end
5825
4869
 
5826
- # @note When making an API call, you may pass UpdateVariantStoreRequest
5827
- # data as a hash:
5828
- #
5829
- # {
5830
- # description: "StoreDescription",
5831
- # name: "String", # required
5832
- # }
5833
- #
5834
4870
  # @!attribute [rw] description
5835
4871
  # A description for the store.
5836
4872
  # @return [String]
@@ -5890,15 +4926,6 @@ module Aws::Omics
5890
4926
  include Aws::Structure
5891
4927
  end
5892
4928
 
5893
- # @note When making an API call, you may pass UpdateWorkflowRequest
5894
- # data as a hash:
5895
- #
5896
- # {
5897
- # description: "WorkflowDescription",
5898
- # id: "WorkflowId", # required
5899
- # name: "WorkflowName",
5900
- # }
5901
- #
5902
4929
  # @!attribute [rw] description
5903
4930
  # A description for the workflow.
5904
4931
  # @return [String]
@@ -5945,24 +4972,22 @@ module Aws::Omics
5945
4972
  # The source file's location in Amazon S3.
5946
4973
  # @return [String]
5947
4974
  #
4975
+ # @!attribute [rw] status_message
4976
+ # A message that provides additional context about a job
4977
+ # @return [String]
4978
+ #
5948
4979
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/VariantImportItemDetail AWS API Documentation
5949
4980
  #
5950
4981
  class VariantImportItemDetail < Struct.new(
5951
4982
  :job_status,
5952
- :source)
4983
+ :source,
4984
+ :status_message)
5953
4985
  SENSITIVE = []
5954
4986
  include Aws::Structure
5955
4987
  end
5956
4988
 
5957
4989
  # A imported variant item's source.
5958
4990
  #
5959
- # @note When making an API call, you may pass VariantImportItemSource
5960
- # data as a hash:
5961
- #
5962
- # {
5963
- # source: "S3Uri", # required
5964
- # }
5965
- #
5966
4991
  # @!attribute [rw] source
5967
4992
  # The source file's location in Amazon S3.
5968
4993
  # @return [String]
@@ -6090,14 +5115,6 @@ module Aws::Omics
6090
5115
 
6091
5116
  # Formatting options for a VCF file.
6092
5117
  #
6093
- # @note When making an API call, you may pass VcfOptions
6094
- # data as a hash:
6095
- #
6096
- # {
6097
- # ignore_filter_field: false,
6098
- # ignore_qual_field: false,
6099
- # }
6100
- #
6101
5118
  # @!attribute [rw] ignore_filter_field
6102
5119
  # The file's ignore filter field setting.
6103
5120
  # @return [Boolean]
@@ -6161,14 +5178,6 @@ module Aws::Omics
6161
5178
 
6162
5179
  # A workflow parameter.
6163
5180
  #
6164
- # @note When making an API call, you may pass WorkflowParameter
6165
- # data as a hash:
6166
- #
6167
- # {
6168
- # description: "WorkflowParameterDescription",
6169
- # optional: false,
6170
- # }
6171
- #
6172
5181
  # @!attribute [rw] description
6173
5182
  # The parameter's description.
6174
5183
  # @return [String]