au_core_test_kit 0.0.16

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data/LICENSE

@@ -0,0 +1,201 @@
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data/lib/au_core_test_kit/assert_helpers.rb

@@ -0,0 +1,31 @@
+# frozen_string_literal: true
+
+module AUCoreTestKit
+  module AssertHelpers
+    extend Forwardable
+
+    def_delegators 'properties',
+                   :conditional_skip_with_msg,
+                   :skip_with_msg
+
+    def act_if_with_message(act_func, condition, message)
+      info message if condition
+
+      act_func.call(condition, message)
+    end
+
+    def act_with_message(act_func, message)
+      info message
+
+      act_func.call(message)
+    end
+
+    def conditional_skip_with_msg(condition, message)
+      act_if_with_message(method(:skip_if), condition, message)
+    end
+
+    def skip_with_msg(message)
+      act_with_message(method(:skip), message)
+    end
+  end
+end

data/lib/au_core_test_kit/au_core_options.rb

@@ -0,0 +1,11 @@
+# frozen_string_literal: true
+
+module AUCoreTestKit
+  module AUCoreOptions
+    SMART_1 = 'smart_app_launch_1'
+    SMART_2 = 'smart_app_launch_2'
+
+    SMART_1_REQUIREMENT = { smart_app_launch_version: SMART_1 }.freeze
+    SMART_2_REQUIREMENT = { smart_app_launch_version: SMART_2 }.freeze
+  end
+end

data/lib/au_core_test_kit/chained_search_test.rb

@@ -0,0 +1,99 @@
+# frozen_string_literal: true
+
+require_relative 'search_test_properties'
+require_relative 'search_test'
+
+module AUCoreTestKit
+  module ChainedSearchTest
+    extend Forwardable
+    include SearchTest
+
+    def_delegators 'self.class', :metadata, :provenance_metadata, :properties
+    def_delegators 'properties',
+                   :resource_type,
+                   :search_param_names,
+                   :attr_paths,
+                   :target_identifier
+
+    def extract_target_resource_from_chained_search_parameter(search_param)
+      search_param.split(':').second.split('.').first
+    end
+
+    def get_resources_identifier(resources, target_identifier)
+      if !target_identifier
+        resources.map(&:identifier).flatten
+      else
+        resources.map do |r|
+          r.identifier.filter { |idnt| idnt.system == target_identifier[:url] }
+        end.flatten
+      end
+    end
+
+    def all_chain_identifier_values(patient_id_list, all_resources, chain_target, target_identifier)
+      patient_id_list.map do |patient_id|
+        next unless !all_resources.nil? && all_resources.include?(patient_id)
+
+        resource_identifiers = get_resources_identifier(
+          all_resources[patient_id].filter { |r| r.resourceType == chain_target },
+          target_identifier
+        )
+        resource_identifiers.map do |identifier|
+          { patient_id:, identifier: }
+        end
+      end.flatten
+    end
+
+    def run_chain_search_test
+      run_chain_search_test_clean(
+        search_param_names[0],
+        patient_id_list,
+        scratch[:patient_resources],
+        attr_paths,
+        target_identifier
+      )
+    end
+
+    def pick_identifier_to_test(patient_id_list, all_patients_resources, search_param, target_identifier)
+      all_chain_identifier_values(
+        patient_id_list,
+        all_patients_resources,
+        extract_target_resource_from_chained_search_parameter(search_param),
+        target_identifier
+      ).sample
+    end
+
+    def returned_resources_is_valid?(resources_returned, identifier_to_test, attr_paths)
+      existing_values = resources_returned.map do |rr|
+        attr_paths.map do |attr_path|
+          resolve_path(rr, attr_path).first.reference.split('/').second
+        end
+      end.flatten.compact.uniq
+
+      existing_values.include? identifier_to_test[:patient_id]
+    end
+
+    def run_chain_search_test_clean(search_param, patient_id_list, all_patients_resources, attr_paths, target_identifier)
+      passed = false
+
+      identifiers_to_test = all_chain_identifier_values(
+        patient_id_list,
+        all_patients_resources,
+        extract_target_resource_from_chained_search_parameter(search_param),
+        target_identifier
+      )
+
+      identifiers_to_test.each do |identifier_to_test|
+        next if identifier_to_test.nil?
+
+        search_and_check_response({ search_param => "#{identifier_to_test[:identifier].system}|#{identifier_to_test[:identifier].value}" })
+        result = returned_resources_is_valid?(fetch_all_bundled_resources.select { |resource| resource.resourceType == resource_type }, identifier_to_test, attr_paths)
+        next unless result
+
+        passed = true
+        break
+      end
+
+      assert passed, 'There is no reference to the target resource in the returned result'
+    end
+  end
+end

data/lib/au_core_test_kit/constants.rb

@@ -0,0 +1,11 @@
+# frozen_string_literal: true
+
+module Constants
+  def self.validation_message_filters
+    [
+      "The value provided ('xml') was not found in the value set 'MimeType'",
+      "The value provided ('json') was not found in the value set 'MimeType'",
+      "The value provided ('ttl') was not found in the value set 'MimeType'"
+    ].freeze
+  end
+end

data/lib/au_core_test_kit/custom_groups/capability_statement/conformance_support_test.rb

@@ -0,0 +1,43 @@
+# frozen_string_literal: true
+
+module AUCoreTestKit
+  class ConformanceSupportTest < Inferno::Test
+    id :au_core_conformance_support
+    title 'FHIR Server supports the conformance interaction'
+    description %(
+      The conformance 'whole system' interaction provides a method to get the
+      CapabilityStatement for the FHIR server. This test checks that the
+      server responds to a `GET` request at the following endpoint:
+
+      ```
+      GET [base]/metadata
+      ```
+
+      This test checks the following SHALL requirement:
+
+      > Applications SHALL return a resource that describes the functionality
+        of the server end-point.
+
+      [http://hl7.org/fhir/R4/http.html#capabilities](http://hl7.org/fhir/R4/http.html#capabilities)
+
+      It does this by checking that the server responds with an HTTP OK 200
+      status code and that the body of the response contains a valid
+      [CapabilityStatement
+      resource](http://hl7.org/fhir/R4/capabilitystatement.html). This test
+      does not inspect the content of the CapabilityStatement to see if it
+      contains the required information. It only checks to see if the RESTful
+      interaction is supported and returns a valid CapabilityStatement
+      resource.
+    )
+    makes_request :capability_statement
+
+    run do
+      fhir_client.set_no_auth
+      fhir_get_capability_statement(name: :capability_statement)
+
+      assert_response_status(200)
+      assert_resource_type(:capability_statement)
+      assert_valid_resource
+    end
+  end
+end

data/lib/au_core_test_kit/custom_groups/capability_statement/fhir_version_test.rb

@@ -0,0 +1,21 @@
+# frozen_string_literal: true
+
+module AUCoreTestKit
+  class FHIRVersionTest < Inferno::Test
+    id :au_core_fhir_version
+    title 'Server is using FHIR R4'
+    description %(
+        This test inspects the CapabilityStatement returned by the server to
+        verify that the server is using FHIR R4.
+      )
+
+    run do
+      fhir_get_capability_statement
+      assert_response_status(200)
+      assert_resource_type(:capability_statement)
+
+      server_version = fhir_client.detect_version.to_s.upcase
+      assert server_version == 'R4', "Server is using FHIR version #{server_version} rather than R4"
+    end
+  end
+end

data/lib/au_core_test_kit/custom_groups/capability_statement/instantiate_test.rb

@@ -0,0 +1,21 @@
+# frozen_string_literal: true
+
+module AUCoreTestKit
+  class InstantiateTest < Inferno::Test
+    id :au_core_instantiate
+    title 'Server instantiates AU Core Server'
+    description %(
+        This test inspects the CapabilityStatement returned by the server to
+        verify that the server instantiates http://hl7.org.au/fhir/core/0.3.0-ballot/CapabilityStatement-au-core-server.html
+      )
+    uses_request :capability_statement
+
+    run do
+      assert_resource_type(:capability_statement)
+      capability_statement = resource
+
+      assert capability_statement.instantiates.include?('http://hl7.org.au/fhir/core/0.3.0-ballot/CapabilityStatement-au-core-server.html'),
+             "Server CapabilityStatement.instantiates does not include 'http://hl7.org.au/fhir/core/0.3.0-ballot/CapabilityStatement-au-core-server.html'"
+    end
+  end
+end

data/lib/au_core_test_kit/custom_groups/capability_statement/json_support_test.rb

@@ -0,0 +1,39 @@
+# frozen_string_literal: true
+
+module AUCoreTestKit
+  class JSONSupportTest < Inferno::Test
+    id :au_core_json_support
+    title 'FHIR server capability states JSON support'
+    description %(
+      FHIR provides multiple [representation
+      formats](https://www.hl7.org/fhir/formats.html) for resources, including
+      JSON and XML. AU Core profiles require servers to use the [JSON
+      representation](https://www.hl7.org/fhir/json.html):
+
+      [```The AU Core Server **SHALL** Support json source formats for all AU Core Responder interactions```](http://hl7.org.au/fhir/core/0.3.0-ballot/CapabilityStatement-au-core-server.html#title)
+
+      The FHIR conformance interaction require servers to describe which
+      formats are available for clients to use. The server must explicitly
+      state that JSON is supported. This is located in the format element
+      of the CapabilityStatement Resource.
+
+      This test checks that one of the following values are located in the
+      format field.
+
+      * json
+      * application/json
+      * application/fhir+json
+    )
+    uses_request :capability_statement
+
+    run do
+      assert_resource_type(:capability_statement)
+
+      json_formats = ['json', 'application/json', 'application/fhir+json']
+      server_formats = resource.format
+
+      assert server_formats.any? { |format| json_formats.include? format },
+             'CapabilityStatement does not state support for JSON'
+    end
+  end
+end

data/lib/au_core_test_kit/custom_groups/capability_statement/profile_support_test.rb

@@ -0,0 +1,53 @@
+# frozen_string_literal: true
+
+module AUCoreTestKit
+  class ProfileSupportTest < Inferno::Test
+    id :au_core_profile_support
+    title 'Capability Statement lists support for required AU Core Profiles'
+    description %(
+      The AU Core Implementation Guide states:
+
+      ```
+      The AU Core Server SHALL:
+      1. Support the AU Core Patient resource profile.
+      2. Support at least one additional resource profile from the list of US
+         Core Profiles.
+      ```
+    )
+    uses_request :capability_statement
+
+    run do
+      assert_resource_type(:capability_statement)
+      capability_statement = resource
+
+      supported_profiles =
+        capability_statement.rest
+                            &.each_with_object([]) do |rest, profiles|
+          rest.resource.each { |resource| profiles.concat(resource.supportedProfile) }
+        end&.uniq
+
+      assert supported_profiles.include?('http://hl7.org.au/fhir/core/0.3.0-ballot/StructureDefinition-au-core-patient.html'),
+             'AU Core Patient profile not supported'
+
+      au_core_profiles = config.options[:au_core_profiles]
+
+      other_profiles = au_core_profiles.reject { |resource_type| resource_type == 'http://hl7.org.au/fhir/core/0.3.0-ballot/StructureDefinition-au-core-patient.html' }
+      other_profiles_supported = other_profiles.any? { |profile| supported_profiles.include? profile }
+      assert other_profiles_supported, 'No AU Core profiles other than Patient are supported'
+
+      if config.options[:required_profiles].present?
+        required_profiles = config.options[:required_profiles]
+
+        missing_profiles = required_profiles - supported_profiles
+
+        missing_profiles_list =
+          missing_profiles
+          .map { |resource| "`#{resource}`" }
+          .join(', ')
+
+        assert missing_profiles.empty?,
+               "The CapabilityStatement did not list support for the following resources: #{missing_profiles_list}"
+      end
+    end
+  end
+end

data/lib/au_core_test_kit/custom_groups/capability_statement/xml_support_test.rb

@@ -0,0 +1,40 @@
+# frozen_string_literal: true
+
+module AUCoreTestKit
+  class XMLSupportTest < Inferno::Test
+    id :au_core_xml_support
+    title 'FHIR server capability states XML support'
+    description %(
+      FHIR provides multiple [representation
+      formats](https://www.hl7.org/fhir/formats.html) for resources, including
+      JSON and XML. AU Core profiles require servers to use the [XML
+      representation](https://www.hl7.org/fhir/xml.html):
+
+      [```The AU Core Server **SHOULD** Support json source formats for all AU Core Responder interactions```](http://hl7.org.au/fhir/core/0.3.0-ballot/CapabilityStatement-au-core-server.html#title)
+
+      The FHIR conformance interaction require servers to describe which
+      formats are available for clients to use. The server must explicitly
+      state that XML is supported. This is located in the format element
+      of the CapabilityStatement Resource.
+
+      This test checks that one of the following values are located in the
+      format field.
+
+      * xml
+      * application/xml
+      * application/fhir+xml
+    )
+    optional true
+    uses_request :capability_statement
+
+    run do
+      assert_resource_type(:capability_statement)
+
+      xml_formats = ['xml', 'application/xml', 'application/fhir+xml']
+      server_formats = resource.format
+
+      assert server_formats.any? { |format| xml_formats.include? format },
+             'CapabilityStatement does not state support for XML'
+    end
+  end
+end

data/lib/au_core_test_kit/custom_groups/clinical_note_attachment_test.rb

@@ -0,0 +1,45 @@
+# frozen_string_literal: true
+
+module AUCoreTestKit
+  class ClinicalNoteAttachmentTest < Inferno::Test
+    id :au_core_clinical_note_attachments
+    title 'DiagnosticReport and DocumentReference reference the same attachment'
+    description %(
+      All presentedForms urls referenced in DiagnosticReports shall have
+      corresponding content attachment urls referenced in DocumentReference.
+
+      There is no single best practice for representing a scanned, or
+      narrative-only report due to the overlapping scope of the underlying
+      resources and variability in system implementation. Reports may be
+      represented by either a DocumentReference or a DiagnosticReport. To
+      require Clients query both DocumentReference and DiagnosticReport to get
+      all the information for a patient is potentially dangerous if a client
+      doesn’t understand or follow this requirement.
+
+      To simplify the requirement, AU Core IG requires servers implement the
+      duplicate reference to allow a client to find a Pathology report, or
+      other Diagnostic Reports, in either Resource.
+    )
+
+    run do
+      skip_if scratch[:document_reference_attachments].blank?,
+              'No DocumentReference attachments found'
+      skip_if scratch[:diagnostic_report_attachments].blank?,
+              'No DiagnosticReport attachments found'
+
+      unmatched_attachment_messages =
+        scratch[:diagnostic_report_attachments].flat_map do |patient_id, report_attachments|
+          unmatched_urls = report_attachments.keys
+
+          unmatched_urls -= scratch[:document_reference_attachments][patient_id].keys if scratch[:document_reference_attachments].key? patient_id
+
+          unmatched_urls.map do |url|
+            "#{url} in DiagnosticReport/#{report_attachments[url]} for Patient #{patient_id}"
+          end
+        end
+
+      assert unmatched_attachment_messages.empty?,
+             "Attachments #{unmatched_attachment_messages.join(', ')} are not referenced in any DocumentReference"
+    end
+  end
+end