au_core_test_kit 0.0.16

data/lib/au_core_test_kit/generated/v1.0.0-preview/allergy_intolerance/allergy_intolerance_patient_search_test.rb

@@ -0,0 +1,66 @@
+# frozen_string_literal: true
+
+require_relative '../../../search_test'
+require_relative '../../../generator/group_metadata'
+require_relative '../../../helpers'
+
+module AUCoreTestKit
+  module AUCoreV100_PREVIEW
+    class AllergyIntolerancePatientSearchTest < Inferno::Test
+      include AUCoreTestKit::SearchTest
+
+      title '(SHALL) Server returns valid results for AllergyIntolerance search by patient'
+      description %(
+A server SHALL support searching by
+patient on the AllergyIntolerance resource. This test
+will pass if resources are returned and match the search criteria. If
+none are returned, the test is skipped.
+
+This test verifies that the server supports searching by reference using
+the form `patient=[id]` as well as `patient=Patient/[id]`. The two
+different forms are expected to return the same number of results. AU
+Core requires that both forms are supported by AU Core responders.
+
+Because this is the first search of the sequence, resources in the
+response will be used for subsequent tests.
+
+Additionally, this test will check that GET and POST search methods
+return the same number of results. Search by POST is required by the
+FHIR R4 specification, and these tests interpret search by GET as a
+requirement of AU Core v1.0.0-preview.
+
+[AU Core Server CapabilityStatement](http://hl7.org.au/fhir/core//CapabilityStatement-au-core-server.html)
+
+      )
+
+      id :au_core_v100_preview_allergy_intolerance_patient_search_test
+      input :patient_ids,
+            title: 'Patient IDs',
+            description: 'Comma separated list of patient IDs that in sum contain all MUST SUPPORT elements',
+            default: 'baratz-toni, irvine-ronny-lawrence, italia-sofia, howe-deangelo, hayes-arianne, baby-banks-john, banks-mia-leanne'
+
+      def self.properties
+        @properties ||= SearchTestProperties.new(
+          first_search: true,
+          resource_type: 'AllergyIntolerance',
+          search_param_names: ['patient'],
+          possible_status_search: true,
+          test_reference_variants: true,
+          test_post_search: true
+        )
+      end
+
+      def self.metadata
+        @metadata ||= Generator::GroupMetadata.new(YAML.load_file(File.join(__dir__, 'metadata.yml'), aliases: true))
+      end
+
+      def scratch_resources
+        scratch[:allergy_intolerance_resources] ||= {}
+      end
+
+      run do
+        run_search_test
+      end
+    end
+  end
+end

data/lib/au_core_test_kit/generated/v1.0.0-preview/allergy_intolerance/allergy_intolerance_read_test.rb

@@ -0,0 +1,28 @@
+# frozen_string_literal: true
+
+require_relative '../../../read_test'
+
+module AUCoreTestKit
+  module AUCoreV100_PREVIEW
+    class AllergyIntoleranceReadTest < Inferno::Test
+      include AUCoreTestKit::ReadTest
+
+      title '(SHALL) Server returns correct AllergyIntolerance resource from AllergyIntolerance read interaction'
+      description 'A server SHALL support the AllergyIntolerance read interaction.'
+
+      id :au_core_v100_preview_allergy_intolerance_read_test
+
+      def resource_type
+        'AllergyIntolerance'
+      end
+
+      def scratch_resources
+        scratch[:allergy_intolerance_resources] ||= {}
+      end
+
+      run do
+        perform_read_test(all_scratch_resources)
+      end
+    end
+  end
+end

data/lib/au_core_test_kit/generated/v1.0.0-preview/allergy_intolerance/allergy_intolerance_reference_resolution_test.rb

@@ -0,0 +1,42 @@
+# frozen_string_literal: true
+
+require_relative '../../../reference_resolution_test'
+
+module AUCoreTestKit
+  module AUCoreV100_PREVIEW
+    class AllergyIntoleranceReferenceResolutionTest < Inferno::Test
+      include AUCoreTestKit::ReferenceResolutionTest
+
+      title 'MustSupport references within AllergyIntolerance resources are valid'
+      description %(
+        This test will attempt to read external references provided within elements
+        marked as 'MustSupport', if any are available.
+
+        It verifies that at least one external reference for each MustSupport Reference element
+        can be accessed by the test client, and conforms to corresponding AU Core profile.
+
+        Elements which may provide external references include:
+
+        * AllergyIntolerance.patient
+      )
+
+      id :au_core_v100_preview_allergy_intolerance_reference_resolution_test
+
+      def resource_type
+        'AllergyIntolerance'
+      end
+
+      def self.metadata
+        @metadata ||= Generator::GroupMetadata.new(YAML.load_file(File.join(__dir__, 'metadata.yml'), aliases: true))
+      end
+
+      def scratch_resources
+        scratch[:allergy_intolerance_resources] ||= {}
+      end
+
+      run do
+        perform_reference_resolution_test(scratch_resources[:all])
+      end
+    end
+  end
+end

data/lib/au_core_test_kit/generated/v1.0.0-preview/allergy_intolerance/allergy_intolerance_validation_test.rb

@@ -0,0 +1,42 @@
+# frozen_string_literal: true
+
+require_relative '../../../validation_test'
+
+module AUCoreTestKit
+  module AUCoreV100_PREVIEW
+    class AllergyIntoleranceValidationTest < Inferno::Test
+      include AUCoreTestKit::ValidationTest
+
+      id :au_core_v100_preview_allergy_intolerance_validation_test
+      title 'AllergyIntolerance resources returned during previous tests conform to the AU Core AllergyIntolerance'
+      description %(
+This test verifies resources returned from the first search conform to
+the [AU Core AllergyIntolerance](http://hl7.org.au/fhir/core/StructureDefinition/au-core-allergyintolerance).
+If at least one resource from the first search is invalid, the test will fail.
+
+It verifies the presence of mandatory elements and that elements with
+required bindings contain appropriate values. CodeableConcept element
+bindings will fail if none of their codings have a code/system belonging
+to the bound ValueSet. Quantity, Coding, and code element bindings will
+fail if their code/system are not found in the valueset.
+
+      )
+      output :dar_code_found, :dar_extension_found
+
+      def resource_type
+        'AllergyIntolerance'
+      end
+
+      def scratch_resources
+        scratch[:allergy_intolerance_resources] ||= {}
+      end
+
+      run do
+        perform_validation_test(scratch_resources[:all] || [],
+                                'http://hl7.org.au/fhir/core/StructureDefinition/au-core-allergyintolerance',
+                                '1.0.0-preview',
+                                skip_if_empty: true)
+      end
+    end
+  end
+end

data/lib/au_core_test_kit/generated/v1.0.0-preview/allergy_intolerance/metadata.yml

@@ -0,0 +1,159 @@
+---
+:name: au_core_allergyintolerance
+:class_name: AuCoreAllergyintoleranceSequence
+:version: v1.0.0-preview
+:reformatted_version: v100_preview
+:resource: AllergyIntolerance
+:profile_url: http://hl7.org.au/fhir/core/StructureDefinition/au-core-allergyintolerance
+:profile_name: AU Core AllergyIntolerance
+:profile_version: 1.0.0-preview
+:title: AllergyIntolerance
+:short_description: Verify support for the server capabilities required by the AU
+  Core AllergyIntolerance.
+:interactions:
+- :code: read
+  :expectation: SHALL
+- :code: search-type
+  :expectation: SHALL
+:operations: []
+:searches:
+- :names:
+  - patient
+  :expectation: SHALL
+  :names_not_must_support_or_mandatory: []
+  :must_support_or_mandatory: true
+- :names:
+  - clinical-status
+  :expectation: MAY
+  :names_not_must_support_or_mandatory: []
+  :must_support_or_mandatory: true
+- :expectation: SHOULD
+  :names:
+  - patient
+  - clinical-status
+  :names_not_must_support_or_mandatory: []
+  :must_support_or_mandatory: true
+:search_definitions:
+  :clinical-status:
+    :paths:
+    - clinicalStatus
+    :full_paths:
+    - AllergyIntolerance.clinicalStatus
+    :comparators: {}
+    :values:
+    - active
+    - inactive
+    - resolved
+    :type: CodeableConcept
+    :contains_multiple: false
+  :patient:
+    :paths:
+    - patient
+    :full_paths:
+    - AllergyIntolerance.patient
+    :comparators: {}
+    :values: []
+    :type: Reference
+    :contains_multiple: false
+    :multiple_or: MAY
+    :multiple_and: MAY
+    :chain:
+    - :chain: identifier
+      :expectation: SHOULD
+      :target: Patient
+    :target_resource: Patient
+:include_params: []
+:revincludes: []
+:required_concepts:
+- clinicalStatus
+- verificationStatus
+:must_supports:
+  :extensions: []
+  :slices: []
+  :elements:
+  - :path: clinicalStatus
+  - :path: verificationStatus
+  - :path: code
+  - :path: patient
+    :types:
+    - Reference
+    :target_profiles:
+    - http://hl7.org.au/fhir/core/StructureDefinition/au-core-patient
+  - :path: onset[x]
+  - :path: reaction
+  - :path: reaction.manifestation
+  - :path: reaction.severity
+:mandatory_elements:
+- AllergyIntolerance.code
+- AllergyIntolerance.patient
+- AllergyIntolerance.reaction.manifestation
+:bindings:
+- :type: CodeableConcept
+  :strength: required
+  :system: http://hl7.org/fhir/ValueSet/allergyintolerance-clinical
+  :path: clinicalStatus
+- :type: CodeableConcept
+  :strength: required
+  :system: http://hl7.org/fhir/ValueSet/allergyintolerance-verification
+  :path: verificationStatus
+- :type: code
+  :strength: required
+  :system: http://hl7.org/fhir/ValueSet/allergy-intolerance-type
+  :path: type
+- :type: code
+  :strength: required
+  :system: http://hl7.org/fhir/ValueSet/allergy-intolerance-category
+  :path: category
+- :type: code
+  :strength: required
+  :system: http://hl7.org/fhir/ValueSet/allergy-intolerance-criticality
+  :path: criticality
+- :type: code
+  :strength: required
+  :system: http://hl7.org/fhir/ValueSet/reaction-event-severity
+  :path: reaction.severity
+:references:
+- :path: AllergyIntolerance.patient
+  :profiles:
+  - http://hl7.org.au/fhir/core/StructureDefinition/au-core-patient
+- :path: AllergyIntolerance.encounter
+  :profiles:
+  - http://hl7.org/fhir/StructureDefinition/Encounter
+- :path: AllergyIntolerance.recorder
+  :profiles:
+  - http://hl7.org/fhir/StructureDefinition/Practitioner
+  - http://hl7.org/fhir/StructureDefinition/PractitionerRole
+  - http://hl7.org/fhir/StructureDefinition/Patient
+  - http://hl7.org/fhir/StructureDefinition/RelatedPerson
+- :path: AllergyIntolerance.asserter
+  :profiles:
+  - http://hl7.org/fhir/StructureDefinition/Patient
+  - http://hl7.org/fhir/StructureDefinition/RelatedPerson
+  - http://hl7.org/fhir/StructureDefinition/Practitioner
+  - http://hl7.org/fhir/StructureDefinition/PractitionerRole
+:tests:
+- :id: au_core_v100_preview_allergy_intolerance_patient_search_test
+  :file_name: allergy_intolerance_patient_search_test.rb
+- :id: au_core_v100_preview_allergy_intolerance_clinical_status_search_test
+  :file_name: allergy_intolerance_clinical_status_search_test.rb
+- :id: au_core_v100_preview_allergy_intolerance_patient_clinical_status_search_test
+  :file_name: allergy_intolerance_patient_clinical_status_search_test.rb
+- :id: au_core_v100_preview_allergy_intolerance_patient_chain_search_test
+  :file_name: allergy_intolerance_patient_chain_search_test.rb
+- :id: au_core_v100_preview_allergy_intolerance_patient_ihi_chain_search_test
+  :file_name: allergy_intolerance_patient_ihi_chain_search_test.rb
+- :id: au_core_v100_preview_allergy_intolerance_patient_medicare_chain_search_test
+  :file_name: allergy_intolerance_patient_medicare_chain_search_test.rb
+- :id: au_core_v100_preview_allergy_intolerance_patient_dva_chain_search_test
+  :file_name: allergy_intolerance_patient_dva_chain_search_test.rb
+- :id: au_core_v100_preview_allergy_intolerance_read_test
+  :file_name: allergy_intolerance_read_test.rb
+- :id: au_core_v100_preview_allergy_intolerance_validation_test
+  :file_name: allergy_intolerance_validation_test.rb
+- :id: au_core_v100_preview_allergy_intolerance_must_support_test
+  :file_name: allergy_intolerance_must_support_test.rb
+- :id: au_core_v100_preview_allergy_intolerance_reference_resolution_test
+  :file_name: allergy_intolerance_reference_resolution_test.rb
+:id: au_core_v100_preview_allergy_intolerance
+:file_name: allergy_intolerance_group.rb
+:delayed_references: []

data/lib/au_core_test_kit/generated/v1.0.0-preview/allergy_intolerance_group.rb

@@ -0,0 +1,93 @@
+# frozen_string_literal: true
+
+require_relative 'allergy_intolerance/allergy_intolerance_patient_search_test'
+require_relative 'allergy_intolerance/allergy_intolerance_clinical_status_search_test'
+require_relative 'allergy_intolerance/allergy_intolerance_patient_clinical_status_search_test'
+require_relative 'allergy_intolerance/allergy_intolerance_patient_chain_search_test'
+require_relative 'allergy_intolerance/allergy_intolerance_patient_ihi_chain_search_test'
+require_relative 'allergy_intolerance/allergy_intolerance_patient_medicare_chain_search_test'
+require_relative 'allergy_intolerance/allergy_intolerance_patient_dva_chain_search_test'
+require_relative 'allergy_intolerance/allergy_intolerance_read_test'
+require_relative 'allergy_intolerance/allergy_intolerance_validation_test'
+require_relative 'allergy_intolerance/allergy_intolerance_must_support_test'
+require_relative 'allergy_intolerance/allergy_intolerance_reference_resolution_test'
+
+module AUCoreTestKit
+  module AUCoreV100_PREVIEW
+    class AllergyIntoleranceGroup < Inferno::TestGroup
+      title 'AllergyIntolerance Tests'
+      short_description 'Verify support for the server capabilities required by the AU Core AllergyIntolerance.'
+      description %(
+  # Background
+
+The AU Core AllergyIntolerance sequence verifies that the system under test is
+able to provide correct responses for AllergyIntolerance queries. These queries
+must contain resources conforming to the AU Core AllergyIntolerance as
+specified in the AU Core v1.0.0-preview Implementation Guide.
+
+# Testing Methodology
+## Searching
+This test sequence will first perform each required search associated
+with this resource. This sequence will perform searches with the
+following parameters:
+
+* patient
+
+### Search Parameters
+The first search uses the selected patient(s) from the prior launch sequence. Any subsequent searches will look for its parameter values from the results of the first search. For example, the `identifier` search in the patient sequence is performed by looking for an existing `Patient.identifier` from any of the resources returned in the `_id` search. If a value cannot be found this way, the search is skipped.
+
+### Search Validation
+Inferno will retrieve up to the first 20 bundle pages of the reply for
+AllergyIntolerance resources and save them for subsequent tests. Each of
+these resources is then checked to see if it matches the searched
+parameters in accordance with [FHIR search
+guidelines](https://www.hl7.org/fhir/search.html). The test will fail,
+for example, if a Patient search for `gender=male` returns a `female`
+patient.
+
+
+## Must Support
+Each profile contains elements marked as "must support". This test
+sequence expects to see each of these elements at least once. If at
+least one cannot be found, the test will fail. The test will look
+through the AllergyIntolerance resources found in the first test for these
+elements.
+
+## Profile Validation
+Each resource returned from the first search is expected to conform to
+the [AU Core AllergyIntolerance](http://hl7.org.au/fhir/core/StructureDefinition/au-core-allergyintolerance). Each element is checked against
+teminology binding and cardinality requirements.
+
+Elements with a required binding are validated against their bound
+ValueSet. If the code/system in the element is not part of the ValueSet,
+then the test will fail.
+
+## Reference Validation
+At least one instance of each external reference in elements marked as
+"must support" within the resources provided by the system must resolve.
+The test will attempt to read each reference found and will fail if no
+read succeeds.
+
+      )
+
+      id :au_core_v100_preview_allergy_intolerance
+      run_as_group
+
+      def self.metadata
+        @metadata ||= Generator::GroupMetadata.new(YAML.load_file(File.join(__dir__, 'allergy_intolerance', 'metadata.yml'), aliases: true))
+      end
+
+      test from: :au_core_v100_preview_allergy_intolerance_patient_search_test
+      test from: :au_core_v100_preview_allergy_intolerance_clinical_status_search_test
+      test from: :au_core_v100_preview_allergy_intolerance_patient_clinical_status_search_test
+      test from: :au_core_v100_preview_allergy_intolerance_patient_chain_search_test
+      test from: :au_core_v100_preview_allergy_intolerance_patient_ihi_chain_search_test
+      test from: :au_core_v100_preview_allergy_intolerance_patient_medicare_chain_search_test
+      test from: :au_core_v100_preview_allergy_intolerance_patient_dva_chain_search_test
+      test from: :au_core_v100_preview_allergy_intolerance_read_test
+      test from: :au_core_v100_preview_allergy_intolerance_validation_test
+      test from: :au_core_v100_preview_allergy_intolerance_must_support_test
+      test from: :au_core_v100_preview_allergy_intolerance_reference_resolution_test
+    end
+  end
+end

data/lib/au_core_test_kit/generated/v1.0.0-preview/au_core_test_suite.rb

@@ -0,0 +1,164 @@
+# frozen_string_literal: true
+
+require 'base64'
+require 'inferno/dsl/oauth_credentials'
+require_relative '../../version'
+require_relative '../../custom_groups/v0.3.0-ballot/capability_statement_group'
+require_relative '../../custom_groups/smart_app_launch_group'
+require_relative '../../custom_groups/missing_data_group'
+require_relative '../../au_core_options'
+require_relative '../../helpers'
+require_relative '../../constants'
+
+require_relative 'patient_group'
+require_relative 'bodyweight_group'
+require_relative 'bloodpressure_group'
+require_relative 'bodyheight_group'
+require_relative 'diagnosticresult_path_group'
+require_relative 'bodytemp_group'
+require_relative 'heartrate_group'
+require_relative 'waistcircum_group'
+require_relative 'resprate_group'
+require_relative 'diagnosticresult_group'
+require_relative 'smokingstatus_group'
+require_relative 'allergy_intolerance_group'
+require_relative 'condition_group'
+require_relative 'encounter_group'
+require_relative 'immunization_group'
+require_relative 'medication_request_group'
+require_relative 'procedure_group'
+require_relative 'location_group'
+require_relative 'organization_group'
+require_relative 'practitioner_group'
+require_relative 'practitioner_role_group'
+
+module AUCoreTestKit
+  module AUCoreV100_PREVIEW
+    class AUCoreTestSuite < Inferno::TestSuite
+      title 'AU Core v1.0.0-preview'
+      description %(
+        The AU Core Test Kit tests systems for their conformance to the [AU Core
+        Implementation Guide]().
+
+        HL7® FHIR® resources are validated with the Java validator using
+        `#{ENV.fetch('TX_SERVER_URL', 'https://tx.dev.hl7.org.au/fhir')}` as the terminology server.
+      )
+      version VERSION
+
+      VERSION_SPECIFIC_MESSAGE_FILTERS = [].freeze
+
+      def self.metadata
+        @metadata ||= YAML.load_file(File.join(__dir__, 'metadata.yml'), aliases: true)[:groups].map do |raw_metadata|
+          Generator::GroupMetadata.new(raw_metadata)
+        end
+      end
+
+      fhir_resource_validator do
+        igs 'hl7.fhir.au.core#1.0.0-preview'
+        message_filters = Constants.validation_message_filters + VERSION_SPECIFIC_MESSAGE_FILTERS
+
+        cli_context do
+          txServer ENV.fetch('TX_SERVER_URL', 'https://tx.dev.hl7.org.au/fhir')
+          disableDefaultResourceFetcher false
+        end
+
+        exclude_message do |message|
+          Helpers.is_message_exist_in_list(message_filters, message.message)
+        end
+
+        perform_additional_validation do |resource, _profile_url|
+          ProvenanceValidator.validate(resource) if resource.instance_of?(FHIR::Provenance)
+        end
+      end
+
+      links [
+        {
+          label: 'Report Issue',
+          url: 'https://github.com/hl7au/au-fhir-core-inferno/issues'
+        },
+        {
+          label: 'Open Source',
+          url: 'https://github.com/hl7au/au-fhir-core-inferno'
+        },
+        {
+          label: 'AU Core Implementation Guide',
+          url: 'https://build.fhir.org/ig/hl7au/au-fhir-core/'
+        }
+      ]
+
+      id :au_core_v100_preview
+
+      input :url,
+            title: 'FHIR Endpoint',
+            description: 'URL of the FHIR endpoint',
+            default: 'https://fhir.hl7.org.au/aucore/fhir/DEFAULT'
+      input :smart_credentials,
+            title: 'OAuth Credentials',
+            type: :oauth_credentials,
+            optional: true
+      input :header_name,
+            title: 'Header name',
+            optional: true
+      input :header_value,
+            title: 'Header value',
+            optional: true
+
+      fhir_client do
+        url :url
+        oauth_credentials :smart_credentials
+        headers Helpers.get_http_header(header_name, header_value)
+      end
+
+      group do
+        title 'AU Core FHIR API'
+        id :au_core_v100_preview_fhir_api
+
+        group from: :au_core_v030_ballot_capability_statement
+
+        group from: :au_core_v100_preview_patient
+
+        group from: :au_core_v100_preview_bodyweight
+
+        group from: :au_core_v100_preview_bloodpressure
+
+        group from: :au_core_v100_preview_bodyheight
+
+        group from: :au_core_v100_preview_diagnosticresult_path
+
+        group from: :au_core_v100_preview_bodytemp
+
+        group from: :au_core_v100_preview_heartrate
+
+        group from: :au_core_v100_preview_waistcircum
+
+        group from: :au_core_v100_preview_resprate
+
+        group from: :au_core_v100_preview_diagnosticresult
+
+        group from: :au_core_v100_preview_smokingstatus
+
+        group from: :au_core_v100_preview_allergy_intolerance
+
+        group from: :au_core_v100_preview_condition
+
+        group from: :au_core_v100_preview_encounter
+
+        group from: :au_core_v100_preview_immunization
+
+        group from: :au_core_v100_preview_medication_request
+
+        group from: :au_core_v100_preview_procedure
+
+        group from: :au_core_v100_preview_location
+
+        group from: :au_core_v100_preview_organization
+
+        group from: :au_core_v100_preview_practitioner
+
+        group from: :au_core_v100_preview_practitioner_role
+
+        group from: :au_core_missing_data_group
+      end
+    end
+  end
+end

data/lib/au_core_test_kit/generated/v1.0.0-preview/bloodpressure/bloodpressure_category_search_test.rb

@@ -0,0 +1,48 @@
+# frozen_string_literal: true
+
+require_relative '../../../search_test'
+require_relative '../../../generator/group_metadata'
+require_relative '../../../helpers'
+
+module AUCoreTestKit
+  module AUCoreV100_PREVIEW
+    class BloodpressureCategorySearchTest < Inferno::Test
+      include AUCoreTestKit::SearchTest
+
+      title '(MAY) Server returns valid results for Observation search by category'
+      description %(
+A server MAY support searching by
+category on the Observation resource. This test
+will pass if resources are returned and match the search criteria. If
+none are returned, the test is skipped.
+
+[AU Core Server CapabilityStatement](http://hl7.org.au/fhir/core//CapabilityStatement-au-core-server.html)
+
+      )
+
+      id :au_core_v100_preview_bloodpressure_category_search_test
+      optional
+
+      def self.properties
+        @properties ||= SearchTestProperties.new(
+          resource_type: 'Observation',
+          search_param_names: ['category'],
+          possible_status_search: true,
+          token_search_params: ['category']
+        )
+      end
+
+      def self.metadata
+        @metadata ||= Generator::GroupMetadata.new(YAML.load_file(File.join(__dir__, 'metadata.yml'), aliases: true))
+      end
+
+      def scratch_resources
+        scratch[:bloodpressure_resources] ||= {}
+      end
+
+      run do
+        run_search_test
+      end
+    end
+  end
+end