assembly_pipe 0.0.0

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Files changed (15) hide show
  1. data/.document +5 -0
  2. data/Gemfile +14 -0
  3. data/Gemfile.lock +22 -0
  4. data/LICENSE.txt +20 -0
  5. data/README.rdoc +19 -0
  6. data/Rakefile +46 -0
  7. data/VERSION +1 -0
  8. data/assembly_pipe.gemspec +67 -0
  9. data/bin/assembly_pipe +152 -0
  10. data/lib/assembly_pipe.rb +145 -0
  11. data/lib/queue/word_analyzer.rb +10 -0
  12. data/test/data/test_logfile.txt +856 -0
  13. data/test/helper.rb +19 -0
  14. data/test/test_assembly_pipe.rb +38 -0
  15. metadata +127 -0
data/lib/queue/word_analyzer.rb ADDED
@@ -0,0 +1,10 @@
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+ class WordAnalyzer
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+ @queue = "word_analysis"
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+
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+ def self.perform(word)
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+ puts "About to do heavy duty analysis on #{word}"
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+ sleep 3 # fake analysis here
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+ # this would be something impressive
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+ puts "Finished with analysis on #{word}"
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+ end
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+ end
data/test/data/test_logfile.txt ADDED
@@ -0,0 +1,856 @@
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+ Jun 24 19:34:17
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+ Will run velvet optimiser with the following paramters:
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+ Velveth parameter string:
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+ -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
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+ Velveth start hash values: 25
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+ Velveth end hash value: 63
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+
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+ Read tracking for final assembly off.
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+ Jun 24 19:34:17
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+
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+ Beginning velveth runs.
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+ ********************************************************
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+ Assembly id: 1
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+ Velveth timestamp: Jun 24 2011 19:39:51
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+ Velveth version: 1.1.04
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+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
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+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_25 25 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
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+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_25
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+ Velvet hash value: 25
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+ Roadmap file size: 1150179650
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+ **********************************************************
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+ ********************************************************
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+ Assembly id: 2
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+ Velveth timestamp: Jun 24 2011 19:45:17
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+ Velveth version: 1.1.04
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+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
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+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_27 27 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
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+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_27
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+ Velvet hash value: 27
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+ Roadmap file size: 1120210155
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+ **********************************************************
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+ ********************************************************
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+ Assembly id: 3
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+ Velveth timestamp: Jun 24 2011 19:50:30
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+ Velveth version: 1.1.04
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+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
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+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_29 29 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
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+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_29
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+ Velvet hash value: 29
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+ Roadmap file size: 1092427898
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+ **********************************************************
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+ ********************************************************
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+ Assembly id: 4
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+ Velveth timestamp: Jun 24 2011 19:55:37
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+ Velveth version: 1.1.04
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+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
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+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_31 31 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
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+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_31
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+ Velvet hash value: 31
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+ Roadmap file size: 1059991277
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+ **********************************************************
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+ ********************************************************
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+ Assembly id: 5
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+ Velveth timestamp: Jun 24 2011 20:00:34
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+ Velveth version: 1.1.04
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+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
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+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_33 33 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
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+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_33
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+ Velvet hash value: 33
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+ Roadmap file size: 1036016757
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+ **********************************************************
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+ ********************************************************
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+ Assembly id: 6
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+ Velveth timestamp: Jun 24 2011 20:05:19
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+ Velveth version: 1.1.04
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+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
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+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_35 35 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
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+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_35
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+ Velvet hash value: 35
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+ Roadmap file size: 1013486715
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+ **********************************************************
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+ ********************************************************
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+ Assembly id: 7
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+ Velveth timestamp: Jun 24 2011 20:09:58
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+ Velveth version: 1.1.04
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+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
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+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_37 37 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
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+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_37
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+ Velvet hash value: 37
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+ Roadmap file size: 990921436
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+ **********************************************************
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+ ********************************************************
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+ Assembly id: 8
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+ Velveth timestamp: Jun 24 2011 20:14:24
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+ Velveth version: 1.1.04
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+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
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+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_39 39 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
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+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_39
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+ Velvet hash value: 39
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+ Roadmap file size: 966579625
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+ **********************************************************
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+ ********************************************************
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+ Assembly id: 9
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+ Velveth timestamp: Jun 24 2011 20:18:43
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+ Velveth version: 1.1.04
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+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
97
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_41 41 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
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+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_41
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+ Velvet hash value: 41
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+ Roadmap file size: 944637109
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+ **********************************************************
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+ ********************************************************
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+ Assembly id: 10
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+ Velveth timestamp: Jun 24 2011 20:23:08
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+ Velveth version: 1.1.04
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+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
107
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_43 43 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
108
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_43
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+ Velvet hash value: 43
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+ Roadmap file size: 920648924
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+ **********************************************************
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+ ********************************************************
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+ Assembly id: 11
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+ Velveth timestamp: Jun 24 2011 20:27:04
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+ Velveth version: 1.1.04
116
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
117
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_45 45 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
118
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_45
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+ Velvet hash value: 45
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+ Roadmap file size: 896851543
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+ **********************************************************
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+ ********************************************************
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+ Assembly id: 12
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+ Velveth timestamp: Jun 24 2011 20:30:43
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+ Velveth version: 1.1.04
126
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
127
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_47 47 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
128
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_47
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+ Velvet hash value: 47
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+ Roadmap file size: 874469175
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+ **********************************************************
132
+ ********************************************************
133
+ Assembly id: 13
134
+ Velveth timestamp: Jun 24 2011 20:34:11
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+ Velveth version: 1.1.04
136
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
137
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_49 49 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
138
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_49
139
+ Velvet hash value: 49
140
+ Roadmap file size: 850210904
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+ **********************************************************
142
+ ********************************************************
143
+ Assembly id: 14
144
+ Velveth timestamp: Jun 24 2011 20:37:27
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+ Velveth version: 1.1.04
146
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
147
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_51 51 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
148
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_51
149
+ Velvet hash value: 51
150
+ Roadmap file size: 812141510
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+ **********************************************************
152
+ ********************************************************
153
+ Assembly id: 15
154
+ Velveth timestamp: Jun 24 2011 20:41:01
155
+ Velveth version: 1.1.04
156
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
157
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_53 53 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
158
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_53
159
+ Velvet hash value: 53
160
+ Roadmap file size: 764443402
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+ **********************************************************
162
+ ********************************************************
163
+ Assembly id: 16
164
+ Velveth timestamp: Jun 24 2011 20:43:56
165
+ Velveth version: 1.1.04
166
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
167
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_55 55 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
168
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_55
169
+ Velvet hash value: 55
170
+ Roadmap file size: 724247711
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+ **********************************************************
172
+ ********************************************************
173
+ Assembly id: 17
174
+ Velveth timestamp: Jun 24 2011 20:46:39
175
+ Velveth version: 1.1.04
176
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
177
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_57 57 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
178
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_57
179
+ Velvet hash value: 57
180
+ Roadmap file size: 682688542
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+ **********************************************************
182
+ ********************************************************
183
+ Assembly id: 18
184
+ Velveth timestamp: Jun 24 2011 20:49:07
185
+ Velveth version: 1.1.04
186
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
187
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_59 59 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
188
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_59
189
+ Velvet hash value: 59
190
+ Roadmap file size: 639827115
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+ **********************************************************
192
+ ********************************************************
193
+ Assembly id: 19
194
+ Velveth timestamp: Jun 24 2011 20:51:21
195
+ Velveth version: 1.1.04
196
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
197
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_61 61 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
198
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_61
199
+ Velvet hash value: 61
200
+ Roadmap file size: 594235250
201
+ **********************************************************
202
+ ********************************************************
203
+ Assembly id: 20
204
+ Velveth timestamp: Jun 24 2011 20:53:31
205
+ Velveth version: 1.1.04
206
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
207
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_63 63 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
208
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_63
209
+ Velvet hash value: 63
210
+ Roadmap file size: 546408829
211
+ **********************************************************
212
+ Jun 24 20:53:31
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+
214
+ Beginning vanilla velvetg runs.
215
+ ********************************************************
216
+ Assembly id: 1
217
+ Assembly score: 3057
218
+ Velveth timestamp: Jun 24 2011 19:39:51
219
+ Velvetg timestamp: Jun 24 2011 21:09:07
220
+ Velveth version: 1.1.04
221
+ Velvetg version: 1.1.04
222
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
223
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_25 25 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
224
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_25
225
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_25
226
+ Velvet hash value: 25
227
+ Roadmap file size: 1150179650
228
+ Total number of contigs: 100863
229
+ n50: 3057
230
+ length of longest contig: 30018
231
+ Total bases in contigs: 34820826
232
+ Number of contigs > 1k: 7637
233
+ Total bases in contigs > 1k: 25843781
234
+ **********************************************************
235
+ ********************************************************
236
+ Assembly id: 2
237
+ Assembly score: 3251
238
+ Velveth timestamp: Jun 24 2011 19:45:17
239
+ Velvetg timestamp: Jun 24 2011 21:22:35
240
+ Velveth version: 1.1.04
241
+ Velvetg version: 1.1.04
242
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
243
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_27 27 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
244
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_27
245
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_27
246
+ Velvet hash value: 27
247
+ Roadmap file size: 1120210155
248
+ Total number of contigs: 94966
249
+ n50: 3251
250
+ length of longest contig: 30250
251
+ Total bases in contigs: 35006581
252
+ Number of contigs > 1k: 7277
253
+ Total bases in contigs > 1k: 25977310
254
+ **********************************************************
255
+ ********************************************************
256
+ Assembly id: 3
257
+ Assembly score: 3314
258
+ Velveth timestamp: Jun 24 2011 19:50:30
259
+ Velvetg timestamp: Jun 24 2011 21:33:51
260
+ Velveth version: 1.1.04
261
+ Velvetg version: 1.1.04
262
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
263
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_29 29 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
264
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_29
265
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_29
266
+ Velvet hash value: 29
267
+ Roadmap file size: 1092427898
268
+ Total number of contigs: 90170
269
+ n50: 3314
270
+ length of longest contig: 30050
271
+ Total bases in contigs: 35181548
272
+ Number of contigs > 1k: 6982
273
+ Total bases in contigs > 1k: 25808310
274
+ **********************************************************
275
+ ********************************************************
276
+ Assembly id: 4
277
+ Assembly score: 3160
278
+ Velveth timestamp: Jun 24 2011 19:55:37
279
+ Velvetg timestamp: Jun 24 2011 21:45:27
280
+ Velveth version: 1.1.04
281
+ Velvetg version: 1.1.04
282
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
283
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_31 31 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
284
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_31
285
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_31
286
+ Velvet hash value: 31
287
+ Roadmap file size: 1059991277
288
+ Total number of contigs: 86124
289
+ n50: 3160
290
+ length of longest contig: 37084
291
+ Total bases in contigs: 35359784
292
+ Number of contigs > 1k: 6965
293
+ Total bases in contigs > 1k: 25470180
294
+ **********************************************************
295
+ ********************************************************
296
+ Assembly id: 5
297
+ Assembly score: 2870
298
+ Velveth timestamp: Jun 24 2011 20:00:34
299
+ Velvetg timestamp: Jun 24 2011 21:56:50
300
+ Velveth version: 1.1.04
301
+ Velvetg version: 1.1.04
302
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
303
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_33 33 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
304
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_33
305
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_33
306
+ Velvet hash value: 33
307
+ Roadmap file size: 1036016757
308
+ Total number of contigs: 80558
309
+ n50: 2870
310
+ length of longest contig: 32493
311
+ Total bases in contigs: 35436547
312
+ Number of contigs > 1k: 7276
313
+ Total bases in contigs > 1k: 25263606
314
+ **********************************************************
315
+ ********************************************************
316
+ Assembly id: 6
317
+ Assembly score: 2748
318
+ Velveth timestamp: Jun 24 2011 20:05:19
319
+ Velvetg timestamp: Jun 24 2011 22:07:15
320
+ Velveth version: 1.1.04
321
+ Velvetg version: 1.1.04
322
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
323
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_35 35 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
324
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_35
325
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_35
326
+ Velvet hash value: 35
327
+ Roadmap file size: 1013486715
328
+ Total number of contigs: 71745
329
+ n50: 2748
330
+ length of longest contig: 33593
331
+ Total bases in contigs: 35313287
332
+ Number of contigs > 1k: 7869
333
+ Total bases in contigs > 1k: 25694538
334
+ **********************************************************
335
+ ********************************************************
336
+ Assembly id: 7
337
+ Assembly score: 3129
338
+ Velveth timestamp: Jun 24 2011 20:09:58
339
+ Velvetg timestamp: Jun 24 2011 22:18:24
340
+ Velveth version: 1.1.04
341
+ Velvetg version: 1.1.04
342
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
343
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_37 37 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
344
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_37
345
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_37
346
+ Velvet hash value: 37
347
+ Roadmap file size: 990921436
348
+ Total number of contigs: 59522
349
+ n50: 3129
350
+ length of longest contig: 33000
351
+ Total bases in contigs: 34954917
352
+ Number of contigs > 1k: 7849
353
+ Total bases in contigs > 1k: 26572197
354
+ **********************************************************
355
+ ********************************************************
356
+ Assembly id: 8
357
+ Assembly score: 3210
358
+ Velveth timestamp: Jun 24 2011 20:14:24
359
+ Velvetg timestamp: Jun 24 2011 22:26:35
360
+ Velveth version: 1.1.04
361
+ Velvetg version: 1.1.04
362
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
363
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_39 39 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
364
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_39
365
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_39
366
+ Velvet hash value: 39
367
+ Roadmap file size: 966579625
368
+ Total number of contigs: 54647
369
+ n50: 3210
370
+ length of longest contig: 28721
371
+ Total bases in contigs: 34873949
372
+ Number of contigs > 1k: 7784
373
+ Total bases in contigs > 1k: 26600171
374
+ **********************************************************
375
+ ********************************************************
376
+ Assembly id: 9
377
+ Assembly score: 2781
378
+ Velveth timestamp: Jun 24 2011 20:18:43
379
+ Velvetg timestamp: Jun 24 2011 22:35:56
380
+ Velveth version: 1.1.04
381
+ Velvetg version: 1.1.04
382
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
383
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_41 41 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
384
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_41
385
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_41
386
+ Velvet hash value: 41
387
+ Roadmap file size: 944637109
388
+ Total number of contigs: 53747
389
+ n50: 2781
390
+ length of longest contig: 24355
391
+ Total bases in contigs: 34883911
392
+ Number of contigs > 1k: 8322
393
+ Total bases in contigs > 1k: 25933039
394
+ **********************************************************
395
+ ********************************************************
396
+ Assembly id: 10
397
+ Assembly score: 2272
398
+ Velveth timestamp: Jun 24 2011 20:23:08
399
+ Velvetg timestamp: Jun 24 2011 22:44:35
400
+ Velveth version: 1.1.04
401
+ Velvetg version: 1.1.04
402
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
403
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_43 43 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
404
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_43
405
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_43
406
+ Velvet hash value: 43
407
+ Roadmap file size: 920648924
408
+ Total number of contigs: 54094
409
+ n50: 2272
410
+ length of longest contig: 24564
411
+ Total bases in contigs: 34861492
412
+ Number of contigs > 1k: 8956
413
+ Total bases in contigs > 1k: 24842524
414
+ **********************************************************
415
+ ********************************************************
416
+ Assembly id: 11
417
+ Assembly score: 1797
418
+ Velveth timestamp: Jun 24 2011 20:27:04
419
+ Velvetg timestamp: Jun 24 2011 22:52:20
420
+ Velveth version: 1.1.04
421
+ Velvetg version: 1.1.04
422
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
423
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_45 45 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
424
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_45
425
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_45
426
+ Velvet hash value: 45
427
+ Roadmap file size: 896851543
428
+ Total number of contigs: 55931
429
+ n50: 1797
430
+ length of longest contig: 20283
431
+ Total bases in contigs: 34802013
432
+ Number of contigs > 1k: 9557
433
+ Total bases in contigs > 1k: 23236115
434
+ **********************************************************
435
+ ********************************************************
436
+ Assembly id: 12
437
+ Assembly score: 1367
438
+ Velveth timestamp: Jun 24 2011 20:30:43
439
+ Velvetg timestamp: Jun 24 2011 23:00:47
440
+ Velveth version: 1.1.04
441
+ Velvetg version: 1.1.04
442
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
443
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_47 47 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
444
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_47
445
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_47
446
+ Velvet hash value: 47
447
+ Roadmap file size: 874469175
448
+ Total number of contigs: 59017
449
+ n50: 1367
450
+ length of longest contig: 18385
451
+ Total bases in contigs: 34617082
452
+ Number of contigs > 1k: 9799
453
+ Total bases in contigs > 1k: 20808244
454
+ **********************************************************
455
+ ********************************************************
456
+ Assembly id: 13
457
+ Assembly score: 1037
458
+ Velveth timestamp: Jun 24 2011 20:34:11
459
+ Velvetg timestamp: Jun 24 2011 23:08:14
460
+ Velveth version: 1.1.04
461
+ Velvetg version: 1.1.04
462
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
463
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_49 49 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
464
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_49
465
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_49
466
+ Velvet hash value: 49
467
+ Roadmap file size: 850210904
468
+ Total number of contigs: 63559
469
+ n50: 1037
470
+ length of longest contig: 18385
471
+ Total bases in contigs: 34275004
472
+ Number of contigs > 1k: 9402
473
+ Total bases in contigs > 1k: 17555126
474
+ **********************************************************
475
+ ********************************************************
476
+ Assembly id: 14
477
+ Assembly score: 789
478
+ Velveth timestamp: Jun 24 2011 20:37:27
479
+ Velvetg timestamp: Jun 24 2011 23:14:18
480
+ Velveth version: 1.1.04
481
+ Velvetg version: 1.1.04
482
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
483
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_51 51 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
484
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_51
485
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_51
486
+ Velvet hash value: 51
487
+ Roadmap file size: 812141510
488
+ Total number of contigs: 68874
489
+ n50: 789
490
+ length of longest contig: 18385
491
+ Total bases in contigs: 33623074
492
+ Number of contigs > 1k: 8198
493
+ Total bases in contigs > 1k: 13573440
494
+ **********************************************************
495
+ ********************************************************
496
+ Assembly id: 15
497
+ Assembly score: 610
498
+ Velveth timestamp: Jun 24 2011 20:41:01
499
+ Velvetg timestamp: Jun 24 2011 23:20:49
500
+ Velveth version: 1.1.04
501
+ Velvetg version: 1.1.04
502
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
503
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_53 53 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
504
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_53
505
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_53
506
+ Velvet hash value: 53
507
+ Roadmap file size: 764443402
508
+ Total number of contigs: 74187
509
+ n50: 610
510
+ length of longest contig: 9253
511
+ Total bases in contigs: 32475982
512
+ Number of contigs > 1k: 6081
513
+ Total bases in contigs > 1k: 9110094
514
+ **********************************************************
515
+ ********************************************************
516
+ Assembly id: 16
517
+ Assembly score: 478
518
+ Velveth timestamp: Jun 24 2011 20:43:56
519
+ Velvetg timestamp: Jun 24 2011 23:26:21
520
+ Velveth version: 1.1.04
521
+ Velvetg version: 1.1.04
522
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
523
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_55 55 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
524
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_55
525
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_55
526
+ Velvet hash value: 55
527
+ Roadmap file size: 724247711
528
+ Total number of contigs: 78910
529
+ n50: 478
530
+ length of longest contig: 7882
531
+ Total bases in contigs: 30619710
532
+ Number of contigs > 1k: 3597
533
+ Total bases in contigs > 1k: 4978071
534
+ **********************************************************
535
+ ********************************************************
536
+ Assembly id: 17
537
+ Assembly score: 385
538
+ Velveth timestamp: Jun 24 2011 20:46:39
539
+ Velvetg timestamp: Jun 24 2011 23:31:21
540
+ Velveth version: 1.1.04
541
+ Velvetg version: 1.1.04
542
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
543
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_57 57 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
544
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_57
545
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_57
546
+ Velvet hash value: 57
547
+ Roadmap file size: 682688542
548
+ Total number of contigs: 79775
549
+ n50: 385
550
+ length of longest contig: 6266
551
+ Total bases in contigs: 27545455
552
+ Number of contigs > 1k: 1565
553
+ Total bases in contigs > 1k: 2040623
554
+ **********************************************************
555
+ ********************************************************
556
+ Assembly id: 18
557
+ Assembly score: 322
558
+ Velveth timestamp: Jun 24 2011 20:49:07
559
+ Velvetg timestamp: Jun 24 2011 23:36:04
560
+ Velveth version: 1.1.04
561
+ Velvetg version: 1.1.04
562
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
563
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_59 59 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
564
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_59
565
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_59
566
+ Velvet hash value: 59
567
+ Roadmap file size: 639827115
568
+ Total number of contigs: 74114
569
+ n50: 322
570
+ length of longest contig: 4314
571
+ Total bases in contigs: 22853339
572
+ Number of contigs > 1k: 477
573
+ Total bases in contigs > 1k: 614208
574
+ **********************************************************
575
+ ********************************************************
576
+ Assembly id: 19
577
+ Assembly score: 278
578
+ Velveth timestamp: Jun 24 2011 20:51:21
579
+ Velvetg timestamp: Jun 24 2011 23:40:26
580
+ Velveth version: 1.1.04
581
+ Velvetg version: 1.1.04
582
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
583
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_61 61 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
584
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_61
585
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_61
586
+ Velvet hash value: 61
587
+ Roadmap file size: 594235250
588
+ Total number of contigs: 58310
589
+ n50: 278
590
+ length of longest contig: 4007
591
+ Total bases in contigs: 16296076
592
+ Number of contigs > 1k: 120
593
+ Total bases in contigs > 1k: 165134
594
+ **********************************************************
595
+ ********************************************************
596
+ Assembly id: 20
597
+ Assembly score: 251
598
+ Velveth timestamp: Jun 24 2011 20:53:31
599
+ Velvetg timestamp: Jun 24 2011 23:43:47
600
+ Velveth version: 1.1.04
601
+ Velvetg version: 1.1.04
602
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
603
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_63 63 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
604
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_63
605
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_63
606
+ Velvet hash value: 63
607
+ Roadmap file size: 546408829
608
+ Total number of contigs: 34007
609
+ n50: 251
610
+ length of longest contig: 4009
611
+ Total bases in contigs: 8787270
612
+ Number of contigs > 1k: 43
613
+ Total bases in contigs > 1k: 65904
614
+ **********************************************************
615
+ Jun 24 23:43:51 Best assembly by assembly score - assembly id: 3
616
+ Jun 24 23:43:51 Optimisation routine chosen for best assembly: shortPaired
617
+ Jun 24 23:43:51 Looking for the expected coverage
618
+ Jun 24 23:44:02 Expected coverage set to 17
619
+ ********************************************************
620
+ Assembly id: 3
621
+ Assembly score: 3314
622
+ Velveth timestamp: Jun 24 2011 19:50:30
623
+ Velvetg timestamp: Jun 24 2011 21:33:51
624
+ Velveth version: 1.1.04
625
+ Velvetg version: 1.1.04
626
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
627
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_29 29 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
628
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_29 -exp_cov 17
629
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_29
630
+ Velvet hash value: 29
631
+ Roadmap file size: 1092427898
632
+ Total number of contigs: 90170
633
+ n50: 3314
634
+ length of longest contig: 30050
635
+ Total bases in contigs: 35181548
636
+ Number of contigs > 1k: 6982
637
+ Total bases in contigs > 1k: 25808310
638
+ Paired Library insert stats:
639
+ **********************************************************
640
+ Jun 24 23:44:02 Setting the short insert length
641
+ Jun 24 23:44:02 Setting assembly short insert length(s) to auto
642
+ Jun 24 23:44:02 Beginning coverage cutoff optimisation
643
+ Jun 24 23:44:11 Setting cov_cutoff to 8.405.
644
+ ********************************************************
645
+ Assembly id: 3
646
+ Assembly score: 27952855
647
+ Velveth timestamp: Jun 24 2011 19:50:30
648
+ Velvetg timestamp: Jun 24 2011 23:55:25
649
+ Velveth version: 1.1.04
650
+ Velvetg version: 1.1.04
651
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
652
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_29 29 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
653
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_29 -exp_cov 17 -cov_cutoff 8.4048
654
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_29
655
+ Velvet hash value: 29
656
+ Roadmap file size: 1092427898
657
+ Total number of contigs: 25613
658
+ n50: 7412
659
+ length of longest contig: 57491
660
+ Total bases in contigs: 30903635
661
+ Number of contigs > 1k: 5112
662
+ Total bases in contigs > 1k: 27952855
663
+ Paired Library insert stats:
664
+ **********************************************************
665
+ Jun 24 23:55:29 Setting cov_cutoff to 5.195.
666
+ ********************************************************
667
+ Assembly id: 3
668
+ Assembly score: 28234691
669
+ Velveth timestamp: Jun 24 2011 19:50:30
670
+ Velvetg timestamp: Jun 24 2011 23:57:26
671
+ Velveth version: 1.1.04
672
+ Velvetg version: 1.1.04
673
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
674
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_29 29 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
675
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_29 -exp_cov 17 -cov_cutoff 5.1952
676
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_29
677
+ Velvet hash value: 29
678
+ Roadmap file size: 1092427898
679
+ Total number of contigs: 32978
680
+ n50: 7243
681
+ length of longest contig: 57491
682
+ Total bases in contigs: 32009540
683
+ Number of contigs > 1k: 5127
684
+ Total bases in contigs > 1k: 28234691
685
+ Paired Library insert stats:
686
+ **********************************************************
687
+ Looking for best cutoff score between 0.000 and 13.600
688
+ Max cutoff lies between 0.000 & 8.405
689
+ Jun 24 23:57:30 Setting cov_cutoff to 3.211.
690
+ ********************************************************
691
+ Assembly id: 3
692
+ Assembly score: 28278026
693
+ Velveth timestamp: Jun 24 2011 19:50:30
694
+ Velvetg timestamp: Jun 24 2011 23:59:21
695
+ Velveth version: 1.1.04
696
+ Velvetg version: 1.1.04
697
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
698
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_29 29 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
699
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_29 -exp_cov 17 -cov_cutoff 3.2106336
700
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_29
701
+ Velvet hash value: 29
702
+ Roadmap file size: 1092427898
703
+ Total number of contigs: 39403
704
+ n50: 7085
705
+ length of longest contig: 57491
706
+ Total bases in contigs: 32694824
707
+ Number of contigs > 1k: 5129
708
+ Total bases in contigs > 1k: 28278026
709
+ Paired Library insert stats:
710
+ **********************************************************
711
+ Max cutoff lies between 0.000 & 5.195
712
+ Jun 24 23:59:26 Setting cov_cutoff to 1.985.
713
+ ********************************************************
714
+ Assembly id: 3
715
+ Assembly score: 28249408
716
+ Velveth timestamp: Jun 24 2011 19:50:30
717
+ Velvetg timestamp: Jun 25 2011 00:01:19
718
+ Velveth version: 1.1.04
719
+ Velvetg version: 1.1.04
720
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
721
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_29 29 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
722
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_29 -exp_cov 17 -cov_cutoff 1.9845664
723
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_29
724
+ Velvet hash value: 29
725
+ Roadmap file size: 1092427898
726
+ Total number of contigs: 48160
727
+ n50: 6766
728
+ length of longest contig: 45963
729
+ Total bases in contigs: 33419900
730
+ Number of contigs > 1k: 5195
731
+ Total bases in contigs > 1k: 28249408
732
+ Paired Library insert stats:
733
+ **********************************************************
734
+ Max cutoff lies between 1.985 & 5.195
735
+ Jun 25 00:01:25 Setting cov_cutoff to 3.969.
736
+ ********************************************************
737
+ Assembly id: 3
738
+ Assembly score: 28278026
739
+ Velveth timestamp: Jun 24 2011 19:50:30
740
+ Velvetg timestamp: Jun 25 2011 00:03:29
741
+ Velveth version: 1.1.04
742
+ Velvetg version: 1.1.04
743
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
744
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_29 29 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
745
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_29 -exp_cov 17 -cov_cutoff 3.9687379648
746
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_29
747
+ Velvet hash value: 29
748
+ Roadmap file size: 1092427898
749
+ Total number of contigs: 39403
750
+ n50: 7085
751
+ length of longest contig: 57491
752
+ Total bases in contigs: 32694824
753
+ Number of contigs > 1k: 5129
754
+ Total bases in contigs > 1k: 28278026
755
+ Paired Library insert stats:
756
+ **********************************************************
757
+ Max cutoff lies between 1.985 & 3.969
758
+ Jun 25 00:03:33 Setting cov_cutoff to 2.743.
759
+ ********************************************************
760
+ Assembly id: 3
761
+ Assembly score: 28278189
762
+ Velveth timestamp: Jun 24 2011 19:50:30
763
+ Velvetg timestamp: Jun 25 2011 00:05:23
764
+ Velveth version: 1.1.04
765
+ Velvetg version: 1.1.04
766
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
767
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_29 29 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
768
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_29 -exp_cov 17 -cov_cutoff 2.7425199377536
769
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_29
770
+ Velvet hash value: 29
771
+ Roadmap file size: 1092427898
772
+ Total number of contigs: 43371
773
+ n50: 6983
774
+ length of longest contig: 57491
775
+ Total bases in contigs: 33050390
776
+ Number of contigs > 1k: 5134
777
+ Total bases in contigs > 1k: 28278189
778
+ Paired Library insert stats:
779
+ **********************************************************
780
+ Max cutoff lies between 1.985 & 3.211
781
+ Jun 25 00:05:28 Setting cov_cutoff to 2.453.
782
+ ********************************************************
783
+ Assembly id: 3
784
+ Assembly score: 28278189
785
+ Velveth timestamp: Jun 24 2011 19:50:30
786
+ Velvetg timestamp: Jun 25 2011 00:07:17
787
+ Velveth version: 1.1.04
788
+ Velvetg version: 1.1.04
789
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
790
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_29 29 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
791
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_29 -exp_cov 17 -cov_cutoff 2.4529240704
792
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_29
793
+ Velvet hash value: 29
794
+ Roadmap file size: 1092427898
795
+ Total number of contigs: 43371
796
+ n50: 6983
797
+ length of longest contig: 57491
798
+ Total bases in contigs: 33050390
799
+ Number of contigs > 1k: 5134
800
+ Total bases in contigs > 1k: 28278189
801
+ Paired Library insert stats:
802
+ **********************************************************
803
+ Max cutoff lies between 1.985 & 2.743
804
+ Jun 25 00:07:23 Setting cov_cutoff to 2.274.
805
+ ********************************************************
806
+ Assembly id: 3
807
+ Assembly score: 28278189
808
+ Velveth timestamp: Jun 24 2011 19:50:30
809
+ Velvetg timestamp: Jun 25 2011 00:09:13
810
+ Velveth version: 1.1.04
811
+ Velvetg version: 1.1.04
812
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
813
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_29 29 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
814
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_29 -exp_cov 17 -cov_cutoff 2.27410465142188
815
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_29
816
+ Velvet hash value: 29
817
+ Roadmap file size: 1092427898
818
+ Total number of contigs: 43371
819
+ n50: 6983
820
+ length of longest contig: 57491
821
+ Total bases in contigs: 33050390
822
+ Number of contigs > 1k: 5134
823
+ Total bases in contigs > 1k: 28278189
824
+ Paired Library insert stats:
825
+ **********************************************************
826
+ Optimum value of cutoff is 2.74
827
+ Took 7 iterations
828
+ Jun 25 00:09:19
829
+
830
+
831
+ Final optimised assembly details:
832
+ ********************************************************
833
+ Assembly id: 3
834
+ Assembly score: 28278189
835
+ Velveth timestamp: Jun 24 2011 19:50:30
836
+ Velvetg timestamp: Jun 25 2011 00:09:13
837
+ Velveth version: 1.1.04
838
+ Velvetg version: 1.1.04
839
+ Readfile(s): -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
840
+ Velveth parameter string: Ar_velvet_sicQ20-scy01_data_29 29 -short -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArS_illumina_sickleQ20_scythe01.fasta -shortPaired -fasta /short/q47/jxl585/Arabiei/assemblies/data/ArPE_illumina_sickleQ20_scythe01.fasta
841
+ Velvetg parameter string: Ar_velvet_sicQ20-scy01_data_29 -exp_cov 17 -cov_cutoff 2.27410465142188
842
+ Assembly directory: /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_29
843
+ Velvet hash value: 29
844
+ Roadmap file size: 1092427898
845
+ Total number of contigs: 43371
846
+ n50: 6983
847
+ length of longest contig: 57491
848
+ Total bases in contigs: 33050390
849
+ Number of contigs > 1k: 5134
850
+ Total bases in contigs > 1k: 28278189
851
+ Paired Library insert stats:
852
+ **********************************************************
853
+
854
+
855
+ Assembly output files are in the following directory:
856
+ /short/q47/jxl585/Arabiei/assemblies/velvet-illumina/Ar_velvet_sicQ20-scy01/Ar_velvet_sicQ20-scy01_data_29