assembly-image 2.1.0 → 2.1.1
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- checksums.yaml +4 -4
- data/.circleci/config.yml +1 -1
- data/.rubocop.yml +101 -2
- data/.rubocop_todo.yml +3 -3
- data/Gemfile.lock +53 -40
- data/assembly-image.gemspec +1 -1
- data/lib/assembly/image.rb +2 -0
- data/spec/spec_helper.rb +2 -2
- metadata +3 -3
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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-
data.tar.gz:
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+
metadata.gz: 307844d855e2e94047191cbb357f944366345bc9d959b942a26c41ec7f0d6a3c
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4
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+
data.tar.gz: 966fcaebcf1ef6877da8a9498019b12628f6aa097cfa8b97d22e98fabbba8aac
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5
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SHA512:
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-
metadata.gz:
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-
data.tar.gz:
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+
metadata.gz: f8c77143ffebd2651796779292d0861aaa9b41f2a7621b8e9991bdc225f297f80d970ef108fdbbd47755b5ac5b65a8f71e64b581042a240d6bc38b19bbf0d2d9
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7
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+
data.tar.gz: 9870392be2e09567d802d2b5a395feb457e7bbb8d19b1f16a4ce49bcf1cce562f66bab4920c4b5a50d0e5eff41fdae40def644e764d1ee37c3fdee8df30e17bc
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data/.circleci/config.yml
CHANGED
data/.rubocop.yml
CHANGED
@@ -143,7 +143,7 @@ RSpec/IdenticalEqualityAssertion: # new in 2.4
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Enabled: true
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RSpec/SubjectDeclaration: # new in 2.5
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Enabled: true
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FactoryBot/SyntaxMethods: # new in 2.7
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Enabled: true
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RSpec/Rails/AvoidSetupHook: # new in 2.4
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Enabled: false
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@@ -180,7 +180,106 @@ Lint/ConstantOverwrittenInRescue: # new in 1.31
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Lint/NonAtomicFileOperation: # new in 1.31
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Enabled: true
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Capybara/SpecificMatcher: # new in 2.12
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Enabled: true
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RSpec/Rails/HaveHttpStatus: # new in 2.12
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Enabled: false
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Gemspec/DevelopmentDependencies: # new in 1.44
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Enabled: false
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Lint/DuplicateMagicComment: # new in 1.37
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Enabled: true
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Lint/DuplicateMatchPattern: # new in 1.50
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Enabled: true
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Lint/RequireRangeParentheses: # new in 1.32
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Enabled: true
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Lint/UselessRescue: # new in 1.43
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Enabled: true
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Metrics/CollectionLiteralLength: # new in 1.47
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Enabled: true
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Style/ArrayIntersect: # new in 1.40
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Enabled: true
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Style/ComparableClamp: # new in 1.44
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Enabled: true
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Style/ConcatArrayLiterals: # new in 1.41
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Enabled: true
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Style/DataInheritance: # new in 1.49
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Enabled: true
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Style/DirEmpty: # new in 1.48
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Enabled: true
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Style/EmptyHeredoc: # new in 1.32
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Enabled: true
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Style/ExactRegexpMatch: # new in 1.51
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Enabled: true
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Style/FileEmpty: # new in 1.48
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Enabled: true
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Style/MagicCommentFormat: # new in 1.35
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Enabled: true
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Style/MapToSet: # new in 1.42
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Enabled: true
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Style/MinMaxComparison: # new in 1.42
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Enabled: true
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Style/OperatorMethodCall: # new in 1.37
|
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Enabled: true
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Style/RedundantArrayConstructor: # new in 1.52
|
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Enabled: true
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Style/RedundantConstantBase: # new in 1.40
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Enabled: true
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Style/RedundantDoubleSplatHashBraces: # new in 1.41
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Enabled: true
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Style/RedundantEach: # new in 1.38
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Enabled: true
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Style/RedundantFilterChain: # new in 1.52
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Enabled: true
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Style/RedundantHeredocDelimiterQuotes: # new in 1.45
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Enabled: true
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Style/RedundantLineContinuation: # new in 1.49
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Enabled: true
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Style/RedundantRegexpConstructor: # new in 1.52
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Enabled: true
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Style/RedundantStringEscape: # new in 1.37
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Enabled: true
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Capybara/MatchStyle: # new in 2.17
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Enabled: true
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Capybara/NegationMatcher: # new in 2.14
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Enabled: true
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Capybara/SpecificActions: # new in 2.14
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Enabled: true
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Capybara/SpecificFinders: # new in 2.13
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Enabled: true
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FactoryBot/AssociationStyle: # new in 2.23
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Enabled: true
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FactoryBot/ConsistentParenthesesStyle: # new in 2.14
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Enabled: true
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FactoryBot/FactoryAssociationWithStrategy: # new in 2.23
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Enabled: true
|
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FactoryBot/FactoryNameStyle: # new in 2.16
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Enabled: true
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FactoryBot/RedundantFactoryOption: # new in 2.23
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Enabled: true
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RSpec/BeEmpty: # new in 2.20
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Enabled: true
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RSpec/ContainExactly: # new in 2.19
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Enabled: true
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RSpec/DuplicatedMetadata: # new in 2.16
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Enabled: true
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RSpec/IndexedLet: # new in 2.20
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Enabled: true
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RSpec/MatchArray: # new in 2.19
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Enabled: true
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RSpec/NoExpectationExample: # new in 2.13
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Enabled: true
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RSpec/PendingWithoutReason: # new in 2.16
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Enabled: true
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RSpec/RedundantAround: # new in 2.19
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Enabled: true
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RSpec/SkipBlockInsideExample: # new in 2.19
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Enabled: true
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RSpec/SortMetadata: # new in 2.14
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Enabled: true
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RSpec/Rails/InferredSpecType: # new in 2.14
|
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Enabled: true
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RSpec/Rails/MinitestAssertions: # new in 2.17
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Enabled: true
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RSpec/Rails/TravelAround: # new in 2.19
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Enabled: true
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data/.rubocop_todo.yml
CHANGED
@@ -1,20 +1,20 @@
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# This configuration was generated by
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# `rubocop --auto-gen-config`
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-
# on
|
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+
# on 2023-06-20 05:53:05 UTC using RuboCop version 1.52.1.
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# The point is for the user to remove these configuration records
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# one by one as the offenses are removed from the code base.
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# Note that changes in the inspected code, or installation of new
|
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# versions of RuboCop, may require this file to be generated again.
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# Offense count: 1
|
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-
# Configuration parameters: Include.
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+
# Configuration parameters: Severity, Include.
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# Include: **/*.gemspec
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Gemspec/RequiredRubyVersion:
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Exclude:
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- 'assembly-image.gemspec'
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# Offense count: 2
|
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-
# Configuration parameters:
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+
# Configuration parameters: AllowedMethods, AllowedPatterns, CountRepeatedAttributes.
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Metrics/AbcSize:
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Max: 20
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data/Gemfile.lock
CHANGED
@@ -1,7 +1,7 @@
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1
1
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PATH
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2
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remote: .
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specs:
|
4
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-
assembly-image (2.1.
|
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+
assembly-image (2.1.1)
|
5
5
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activesupport (> 6.1)
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assembly-objectfile (>= 1.6.4)
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ruby-vips (>= 2.0)
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@@ -9,87 +9,100 @@ PATH
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GEM
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remote: http://rubygems.org/
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specs:
|
12
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-
activesupport (7.0.
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12
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+
activesupport (7.0.8)
|
13
13
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concurrent-ruby (~> 1.0, >= 1.0.2)
|
14
14
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i18n (>= 1.6, < 2)
|
15
15
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minitest (>= 5.1)
|
16
16
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tzinfo (~> 2.0)
|
17
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-
assembly-objectfile (2.
|
17
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+
assembly-objectfile (2.2.0)
|
18
18
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activesupport (>= 5.2.0)
|
19
19
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mime-types (> 3)
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20
20
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mini_exiftool
|
21
21
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ast (2.4.2)
|
22
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+
base64 (0.1.1)
|
22
23
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byebug (11.1.3)
|
23
24
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coderay (1.1.3)
|
24
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-
concurrent-ruby (1.
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+
concurrent-ruby (1.2.2)
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25
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diff-lcs (1.5.0)
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27
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docile (1.4.0)
|
27
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ffi (1.15.5)
|
28
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-
i18n (1.
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+
i18n (1.14.1)
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concurrent-ruby (~> 1.0)
|
30
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-
json (2.6.
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+
json (2.6.3)
|
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+
language_server-protocol (3.17.0.3)
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31
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method_source (1.0.0)
|
32
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-
mime-types (3.
|
34
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+
mime-types (3.5.1)
|
33
35
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mime-types-data (~> 3.2015)
|
34
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-
mime-types-data (3.
|
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+
mime-types-data (3.2023.0808)
|
35
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mini_exiftool (2.10.2)
|
36
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-
minitest (5.
|
37
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-
parallel (1.
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38
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-
parser (3.
|
38
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+
minitest (5.20.0)
|
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+
parallel (1.23.0)
|
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+
parser (3.2.2.3)
|
39
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ast (~> 2.4.1)
|
40
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-
|
42
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racc
|
43
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pry (0.14.2)
|
41
44
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coderay (~> 1.1)
|
42
45
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method_source (~> 1.0)
|
43
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-
pry-byebug (3.
|
46
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+
pry-byebug (3.10.1)
|
44
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byebug (~> 11.0)
|
45
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-
pry (
|
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+
pry (>= 0.13, < 0.15)
|
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+
racc (1.7.1)
|
46
50
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rainbow (3.1.1)
|
47
51
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rake (13.0.6)
|
48
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-
regexp_parser (2.
|
49
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-
rexml (3.2.
|
50
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-
rspec (3.
|
51
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-
rspec-core (~> 3.
|
52
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-
rspec-expectations (~> 3.
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-
rspec-mocks (~> 3.
|
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rspec-core (3.
|
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-
rspec-support (~> 3.
|
56
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-
rspec-expectations (3.
|
52
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+
regexp_parser (2.8.1)
|
53
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+
rexml (3.2.6)
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+
rspec (3.12.0)
|
55
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+
rspec-core (~> 3.12.0)
|
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+
rspec-expectations (~> 3.12.0)
|
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+
rspec-mocks (~> 3.12.0)
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+
rspec-core (3.12.2)
|
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+
rspec-support (~> 3.12.0)
|
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rspec-expectations (3.12.3)
|
57
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diff-lcs (>= 1.2.0, < 2.0)
|
58
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-
rspec-support (~> 3.
|
59
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-
rspec-mocks (3.
|
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rspec-support (~> 3.12.0)
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rspec-mocks (3.12.6)
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60
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diff-lcs (>= 1.2.0, < 2.0)
|
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-
rspec-support (~> 3.
|
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rspec-support (3.
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-
rubocop (1.
|
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rspec-support (~> 3.12.0)
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rspec-support (3.12.1)
|
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+
rubocop (1.56.3)
|
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+
base64 (~> 0.1.1)
|
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json (~> 2.3)
|
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language_server-protocol (>= 3.17.0)
|
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parallel (~> 1.10)
|
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-
parser (>= 3.
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+
parser (>= 3.2.2.3)
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rainbow (>= 2.2.2, < 4.0)
|
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regexp_parser (>= 1.8, < 3.0)
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rexml (>= 3.2.5, < 4.0)
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-
rubocop-ast (>= 1.
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rubocop-ast (>= 1.28.1, < 2.0)
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ruby-progressbar (~> 1.7)
|
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-
unicode-display_width (>=
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-
rubocop-ast (1.
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parser (>= 3.
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-
rubocop-
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rubocop (~> 1.
|
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-
|
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+
unicode-display_width (>= 2.4.0, < 3.0)
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rubocop-ast (1.29.0)
|
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parser (>= 3.2.1.0)
|
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rubocop-capybara (2.18.0)
|
82
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+
rubocop (~> 1.41)
|
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+
rubocop-factory_bot (2.24.0)
|
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+
rubocop (~> 1.33)
|
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+
rubocop-rspec (2.24.0)
|
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+
rubocop (~> 1.33)
|
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+
rubocop-capybara (~> 2.17)
|
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+
rubocop-factory_bot (~> 2.22)
|
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+
ruby-progressbar (1.13.0)
|
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ruby-vips (2.1.4)
|
79
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ffi (~> 1.12)
|
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-
simplecov (0.
|
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+
simplecov (0.22.0)
|
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docile (~> 1.1)
|
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simplecov-html (~> 0.11)
|
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simplecov_json_formatter (~> 0.1)
|
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simplecov-html (0.12.3)
|
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simplecov_json_formatter (0.1.4)
|
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-
tzinfo (2.0.
|
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+
tzinfo (2.0.6)
|
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concurrent-ruby (~> 1.0)
|
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-
unicode-display_width (2.2
|
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unicode-display_width (2.4.2)
|
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PLATFORMS
|
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x86_64-darwin-19
|
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x86_64-darwin-21
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+
x86_64-darwin-22
|
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x86_64-linux
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DEPENDENCIES
|
@@ -102,4 +115,4 @@ DEPENDENCIES
|
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102
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simplecov
|
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|
104
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BUNDLED WITH
|
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-
2.
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2.4.13
|
data/assembly-image.gemspec
CHANGED
@@ -4,7 +4,7 @@ $LOAD_PATH.push File.expand_path('lib', __dir__)
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4
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|
5
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Gem::Specification.new do |s|
|
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s.name = 'assembly-image'
|
7
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-
s.version = '2.1.
|
7
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+
s.version = '2.1.1'
|
8
8
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s.authors = ['Peter Mangiafico', 'Renzo Sanchez-Silva', 'Monty Hindman', 'Tony Calavano']
|
9
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s.email = ['pmangiafico@stanford.edu']
|
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s.homepage = ''
|
data/lib/assembly/image.rb
CHANGED
@@ -42,6 +42,8 @@ module Assembly
|
|
42
42
|
end
|
43
43
|
|
44
44
|
def vips_image
|
45
|
+
# Disable cache. Otherwise, Vips gets confused by files with the same filename.
|
46
|
+
Vips.cache_set_max_files(0)
|
45
47
|
# autorot will only affect images that need rotation: https://www.libvips.org/API/current/libvips-conversion.html#vips-autorot
|
46
48
|
@vips_image ||= Vips::Image.new_from_file(path).autorot
|
47
49
|
end
|
data/spec/spec_helper.rb
CHANGED
@@ -169,10 +169,10 @@ def generate_test_image(file, params = {})
|
|
169
169
|
|
170
170
|
temp_array = color_gauge_values(cg_type)
|
171
171
|
temp_image = Vips::Image.black(width, height, bands: temp_array.first.size)
|
172
|
-
|
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|
+
5.times do |i|
|
173
173
|
b = (box_size * i) + (line_size * (i + 1))
|
174
174
|
# d = b + box_size - line_size
|
175
|
-
|
175
|
+
6.times do |j|
|
176
176
|
a = (box_size * j) + (line_size * (j + 1))
|
177
177
|
# c = a + box_size - line_size
|
178
178
|
colors = temp_array.shift
|
metadata
CHANGED
@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: assembly-image
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3
3
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version: !ruby/object:Gem::Version
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4
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-
version: 2.1.
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4
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+
version: 2.1.1
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5
5
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platform: ruby
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6
6
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authors:
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7
7
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- Peter Mangiafico
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@@ -11,7 +11,7 @@ authors:
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11
11
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autorequire:
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12
12
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bindir: exe
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13
13
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cert_chain: []
|
14
|
-
date:
|
14
|
+
date: 2023-09-21 00:00:00.000000000 Z
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15
15
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dependencies:
|
16
16
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- !ruby/object:Gem::Dependency
|
17
17
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name: activesupport
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@@ -194,7 +194,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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|
194
194
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- !ruby/object:Gem::Version
|
195
195
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version: '0'
|
196
196
|
requirements: []
|
197
|
-
rubygems_version: 3.
|
197
|
+
rubygems_version: 3.3.7
|
198
198
|
signing_key:
|
199
199
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specification_version: 4
|
200
200
|
summary: Ruby immplementation of image services needed to prepare objects to be accessioned
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