assaydepot 0.0.1 → 0.1.1

checksums.yaml

@@ -0,0 +1,7 @@
+---
+SHA256:
+  metadata.gz: ac3e59291589c598212136d3054ea0c5abc24c594b7278f3ab69b28c25fa7509
+  data.tar.gz: 3cabe89cd8cd5c7828a6de608ccf5587867ab707bbda355900b6cd9830c50528
+SHA512:
+  metadata.gz: e68c24ab5fd611118b446d7a987336a364d062dd772fa2b920b213f4611f08bd64a0895d0501934bc5679e9cfc3d2092d1c9bf5164e4afec34bd1bcb50e78b94
+  data.tar.gz: 0c0c9f56eca381700ccb7cdc2c9d25823ecfb932e5b8f297330b976dd7e9504f1a6bcd101223123d66d3b9a2702217c1014c9b07cd4b2bbdb89a861c40064003

data/.gitignore

@@ -2,6 +2,7 @@
 *.rbc
 .bundle
 .config
+.ruby-version
 .yardoc
 Gemfile.lock
 InstalledFiles
@@ -15,3 +16,5 @@ spec/reports
 test/tmp
 test/version_tmp
 tmp
+.env
+./api.rb

data/.rspec

@@ -0,0 +1 @@
+--format documentation

data/.travis.yml

@@ -0,0 +1,6 @@
+rvm:
+  - 2.0.0
+  - 2.1.0
+  - 2.3.0
+script:
+  - bundle exec rake spec

data/Gemfile

@@ -1,4 +1,7 @@
 source 'https://rubygems.org'
+gem 'pry'
+gem 'pry-byebug'
+gem 'dotenv-rails', groups: [:development, :test]
 
 # Specify your gem's dependencies in assaydepot.gemspec
 gemspec

data/LICENSE.md

@@ -0,0 +1,10 @@
+#The MIT License (MIT)
+
+Copyright (c) 2012 Assay Depot
+
+Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+

data/README.md

@@ -1,6 +1,10 @@
-# AssayDepot
+# Scientist.com
 
-Ruby interface for Assay Depot's online laboratory (http://www.assaydepot.com).
+Ruby interface for Scientist.com's (formerly Assay Depot's) research services marketplace (http://www.scientist.com).
+
+## Scientist.com Developer Program
+
+An authentication token is required for the API to function. If you would like access to the API, please email support@scientist.com.
 
 ## Installation
 
@@ -18,16 +22,32 @@ Or install it yourself as:
 
 ## Basic Usage
 
+### Storefront
+
 ```ruby
 require 'assaydepot'
 AssayDepot.configure do |config|
-  config.auth_token = "1234567890"
-  config.url = "http://localhost:3000/api"
+  config.access_token = "1234567890"
+  config.url = "https://app.scientist.com"
 end
 wares = AssayDepot::Ware.find("Antibody")
 wares.total
 ```
 
+### Backoffice
+
+```ruby
+require 'assaydepot'
+AssayDepot.configure do |config|
+  config.access_token = "1234567890"
+  config.url = "https://backoffice.scientist.com"
+end
+quoted_ware = AssayDepot::QuotedWare.get()
+```
+
+## API Documentation
+See the [Scientist.com API documentation](https://assaydepot.github.io/scientist_api_docs/#introduction) for details on the Scientist.com API resources and code examples using this SDK.
+
 ## Using Facets
 
 ```ruby
@@ -45,14 +65,14 @@ wares.first["name"]
 ## Providers
 
 ```ruby
-providers = AssayDepot::Provider.where(:starts_with => "a").per_page(600)
+providers = AssayDepot::Provider.where(:starts_with => "a").per_page(50)
 providers.count
 ```
 
 ## Get Details
 ```ruby
 providers = AssayDepot::Provider.where(:starts_with => "a")
-AssayDepot::Provider.get(providers.first["id"])
+AssayDepot::Provider.get(id: providers.first["id"])
 ```
 
 ## Contributing
@@ -62,3 +82,7 @@ AssayDepot::Provider.get(providers.first["id"])
 3. Commit your changes (`git commit -am 'Added some feature'`)
 4. Push to the branch (`git push origin my-new-feature`)
 5. Create new Pull Request
+
+## License
+
+The Scientist.com Ruby SDK is released under the MIT license.

data/Rakefile

@@ -1,2 +1,8 @@
 #!/usr/bin/env rake
 require "bundler/gem_tasks"
+
+require 'rspec/core/rake_task'
+RSpec::Core::RakeTask.new(:spec)
+
+task :test => :spec
+task :default => :spec

data/assaydepot.gemspec

@@ -2,18 +2,24 @@
 require File.expand_path('../lib/assaydepot/version', __FILE__)
 
 Gem::Specification.new do |gem|
-  gem.authors       = ["Christopher Petersen"]
-  gem.email         = ["christopher.petersen@gmail.com"]
-  gem.description   = %q{This is the first version of Assay Depot's Ruby SDK. It provides read access to Services and Vendors through assaydepot.com's JSON API.}
+  gem.authors       = ["Christopher Petersen", "Ron Ranauro"]
+  gem.email         = ["chris@scientist.com", "ron@scientist.com"]
+  gem.description   = %q{The Scientist Ruby SDK. It provides read access to Services and Suppliers through scientist.com's JSON API.}
   gem.summary       = %q{Provides read access to Assay Depot's Services and Vendors.}
   gem.homepage      = "https://github.com/assaydepot/assaydepot-rb"
 
   gem.add_dependency('json')
+  gem.add_dependency('rack')
+
+  gem.add_development_dependency('rake')
+  gem.add_development_dependency('rspec')
+  gem.add_development_dependency('oauth2')
 
   gem.files         = `git ls-files`.split($\)
   gem.executables   = gem.files.grep(%r{^bin/}).map{ |f| File.basename(f) }
   gem.test_files    = gem.files.grep(%r{^(test|spec|features)/})
   gem.name          = "assaydepot"
   gem.require_paths = ["lib"]
+
   gem.version       = AssayDepot::VERSION
 end

data/lib/assaydepot.rb

@@ -2,25 +2,22 @@ require "assaydepot/version"
 require "assaydepot/configurable"
 require "assaydepot/client"
 require "assaydepot/model"
-require "assaydepot/ware"
-require "assaydepot/provider"
-
-# Twitter.configure do |config|
-#   config.consumer_key = YOUR_CONSUMER_KEY
-#   config.consumer_secret = YOUR_CONSUMER_SECRET
-#   config.oauth_token = YOUR_OAUTH_TOKEN
-#   config.oauth_token_secret = YOUR_OAUTH_TOKEN_SECRET
-# end
+require "assaydepot/core"
+require "assaydepot/endpoints"
+require "assaydepot/event"
 
 module AssayDepot
-  class << self
-    include AssayDepot::Configurable
+  class SignatureVerificationError < StandardError
+    def initialize(msg="Event not properly signed.", exception_type="custom")
+      @exception_type = exception_type
+      super(msg)
+    end
   end
 
-  # Delegate to a AssayDepot::Client
-  #
-  # @return [AssayDepot::Client]
-  def client
-    AssayDepot::Client.new(options)
+  class WebhookError < StandardError
+    def initialize(msg="Webhook was not applied.", exception_type="custom")
+      @exception_type = exception_type
+      super(msg)
+    end
   end
-end
+end

data/lib/assaydepot/client.rb

@@ -1,32 +1,95 @@
 require "open-uri"
 require "json"
+require 'net/http'
+require 'rack'
 
 module AssayDepot
-  class Client    
+  class Client
+
     def initialize(options={})
-      @search_type = options[:search_type] || "wares"
+      @endpoint = options[:endpoint]
+    end
+
+    def request(url = nil, params={}, headers={}, auth={})
+      uri = url.nil? ? get_uri(params) : URI( "#{url}" )
+      puts "CLIENT.REQUEST HOST [#{uri.host}] URI [#{uri.request_uri}] PARAMS [#{params.inspect}]" if ENV["DEBUG"] == "true"
+      uri.query = Rack::Utils.build_nested_query(params) unless params.keys.length == 0
+      http = Net::HTTP.new(uri.host, uri.port)
+      http.use_ssl = uri.scheme === 'https'
+      request = Net::HTTP::Get.new(uri.request_uri)
+      request["Authorization"] = "Bearer #{AssayDepot.access_token}" unless params[:access_token] || auth[:username]
+      request.basic_auth auth[:username], auth[:password] unless auth[:username].nil?
+      res = http.request(request)
+      JSON.parse(res.body)
+    end
+
+    def get(params: {})
+      uri = get_uri( params )
+      http = Net::HTTP.new(uri.host, uri.port)
+      http.use_ssl = uri.scheme === 'https'
+      request = Net::HTTP::Get.new(uri.request_uri)
+      puts "CLIENT.GET HOST [#{uri.host}] URI [#{uri.request_uri}] PARAMS [#{params.inspect}]" if ENV["DEBUG"] == "true"
+      request["Authorization"] = "Bearer #{AssayDepot.access_token}" unless params[:access_token]
+      res = http.request(request)
+      res.body
     end
 
-    def search_url(query, facets, params={})
-      "#{AssayDepot.url}/#{@search_type}.json?#{params.collect { |k,v| "#{k}=#{v.to_s.gsub(" ","+")}"}.join("&")}"
+    def put(body: {}, params: {})
+      uri = get_uri( params )
+      http = Net::HTTP.new(uri.host, uri.port)
+      http.use_ssl = uri.scheme === 'https'
+      request = Net::HTTP::Put.new(uri.request_uri)
+      puts "CLIENT.PUT HOST [#{uri.host}] URI [#{uri.request_uri}] BODY [#{body.inspect}] PARAMS [#{params.inspect}]" if ENV["DEBUG"] == "true"
+      request["Authorization"] = "Bearer #{AssayDepot.access_token}" unless params[:access_token]
+      request["Content-Type"] = "application/json"
+      if (body.keys.length > 0)
+        request.body = body.to_json
+      end
+      res = http.request(request)
+      res.body
     end
 
-    def get_url(id, params={})
-      "#{AssayDepot.url}/#{@search_type}/#{id}.json?#{params.collect { |k,v| "#{k}=#{v.to_s.gsub(" ","+")}"}.join("&")}"
+    def post(body: {}, params: {})
+      uri = get_uri( params )
+      http = Net::HTTP.new(uri.host, uri.port)
+      http.use_ssl = uri.scheme === 'https'
+      request = Net::HTTP::Post.new(uri.request_uri)
+      puts "CLIENT.POST HOST [#{uri.host}] URI [#{uri.request_uri}] BODY [#{body.inspect}] PARAMS [#{params.inspect}]" if ENV["DEBUG"] == "true"
+      request["Authorization"] = "Bearer #{AssayDepot.access_token}" unless params[:access_token]
+      request["Accept"] = "application/json"
+      request["Content-Type"] = "application/json"
+      if (body && body.keys.length > 0)
+        request.body = body.to_json
+      end
+      res = http.request(request)
+      res.body
     end
 
-    def search(query, facets, params={})
-      params["auth_token"] = AssayDepot.auth_token
-      params["q"] = query
-      facets.map do |name,value|
+    def delete(params: {})
+      uri = get_uri( params )
+      http = Net::HTTP.new(uri.host, uri.port)
+      http.use_ssl = uri.scheme === 'https'
+      request = Net::HTTP::Delete.new(uri.request_uri)
+      puts "CLIENT.DELETE HOST [#{uri.host}] URI [#{uri.request_uri}]}] PARAMS [#{params.inspect}]" if ENV["DEBUG"] == "true"
+      request["Authorization"] = "Bearer #{AssayDepot.access_token}" unless params[:access_token]
+      res = http.request(request)
+      res.body
+    end
+
+    def search(query: nil, facets: {}, params: {})
+      params["q"] = query if query != ""
+      facets&.map do |name,value|
         params["facets[#{name}][]"] = value
       end
-      JSON.parse(open(search_url(query, facets, params)).read)
+      get(params: params)
     end
 
-    def get(id, params={})
-      params["auth_token"] = AssayDepot.auth_token
-      JSON.parse(open(get_url(id, params)).read)
+    private
+
+    def get_uri( params )
+      uri = URI( "#{AssayDepot.url}/#{@endpoint}" )
+      uri.query = Rack::Utils.build_nested_query(params) unless params.keys.length == 0
+      uri
     end
   end
-end
+end

data/lib/assaydepot/configurable.rb

@@ -9,7 +9,7 @@ module AssayDepot
 
     CONFIG_KEYS = [
       :url,
-      :auth_token,
+      :access_token,
     ] unless defined? CONFIG_KEYS
     attr_accessor *CONFIG_KEYS
 

data/lib/assaydepot/core.rb

@@ -0,0 +1,12 @@
+module AssayDepot
+  class << self
+    include ::AssayDepot::Configurable
+  end
+
+  # Delegate to a AssayDepot::Client
+  #
+  # @return [AssayDepot::Client]
+  def client
+    ::AssayDepot::Client.new(options)
+  end
+end

data/lib/assaydepot/endpoints.rb

@@ -0,0 +1,236 @@
+module AssayDepot
+
+  class Category
+    include ::AssayDepot::SearchModel
+
+    def self.endpoint(id=nil, format="json")
+      get_endpoint(id, "categories", format)
+    end
+
+    def self.ref_name
+      "category_refs"
+    end
+  end
+
+  class DynamicForm
+    include ::AssayDepot::SearchModel
+
+    def self.endpoint(id=nil, format="json")
+      get_endpoint(id, "dynamic_forms", format)
+    end
+  end
+
+  class Info
+    include ::AssayDepot::SearchModel
+
+    def self.endpoint(id=nil, format="json")
+      get_endpoint(nil, "info", format)
+    end
+  end
+
+  class Organization
+    include ::AssayDepot::SearchModel
+
+    def self.endpoint(id=nil, format="json")
+      get_endpoint(id, "organizations", format)
+    end
+  end
+
+  class QuoteGroup
+    include ::AssayDepot::SearchModel
+
+    def self.mine
+      get(id: "mine")
+    end
+
+    def self.endpoint(id=nil, format="json")
+      get_endpoint(id, "quote_groups", format)
+    end
+
+    def self.ref_name
+      "quote_group_refs"
+    end
+  end
+
+  class AddNote
+    include ::AssayDepot::SearchModel
+
+    def self.endpoint(id, format="json")
+      "/quote_groups/#{id}/add_note.#{format}"
+    end
+
+    def self.ref_name
+      "quote_group_refs"
+    end
+  end
+
+  class QuotedWare
+    include ::AssayDepot::SearchModel
+
+    def self.proposals(id, format="json")
+      get(id: "#{id[:id]}/proposals", format: format)
+    end
+
+    def self.purchase_orders(id, format="json")
+      get(id: "#{id[:id]}/purchase_orders", format: format)
+    end
+
+    def self.messages(id, format="json")
+      get(id: "#{id[:id]}/messages", format: format)
+    end
+
+    def self.endpoint(id=nil, format="json")
+      get_endpoint(id, "quoted_wares", format)
+    end
+
+    def self.ref_name
+      "quoted_ware_refs"
+    end
+  end
+
+  class Provider
+    include ::AssayDepot::SearchModel
+
+    def self.endpoint(id=nil, format="json")
+      get_endpoint( id, "providers", format)
+    end
+
+    def self.search_type
+      "providers"
+    end
+
+    def self.ref_name
+      "provider_refs"
+    end
+  end
+
+  class ProviderWare
+    include ::AssayDepot::SearchModel
+
+    def self.endpoint(id, format="json")
+      "/providers/#{id.is_a?(Array) ? id[0] : id}/wares.#{format}"
+    end
+
+    def self.ref_name
+      "ware_refs"
+    end
+  end
+
+  class User
+    include ::AssayDepot::SearchModel
+
+    def self.profile
+      get(id: "profile")
+    end
+
+    def self.endpoint(id=nil, format="json")
+      get_endpoint(id == nil || id[0] == nil ? nil : 'profile', "users", format)
+    end
+
+    def self.ref_name
+      "user_refs"
+    end
+  end
+
+  class Ware
+    include ::AssayDepot::SearchModel
+
+    def self.endpoint(id=nil, format="json")
+      get_endpoint( id, "wares", format)
+    end
+
+    def self.search_type
+      "wares"
+    end
+
+    def self.ref_name
+      "ware_refs"
+    end
+  end
+
+  class WareProvider
+    include ::AssayDepot::SearchModel
+
+    def self.endpoint(id, format="json")
+      if (id.is_a?(Array) && id.length > 1)
+        url = "/wares/#{id[0]}/providers/#{id[1]}.#{format}"
+      else
+        url = "/wares/#{id.is_a?(Array) ? id[0] : id}/providers.#{format}"
+      end
+      url
+    end
+
+    def self.ref_name
+      "provider_refs"
+    end
+  end
+
+  class Webhook
+    include ::AssayDepot::SearchModel
+
+    def self.endpoint(id=nil, format="json")
+      get_endpoint(id, "webhook_config", format)
+    end
+
+    def self.ref_name
+      "results"
+    end
+  end
+
+  class TokenAuth
+    include ::AssayDepot::SearchModel
+
+    def self.endpoint(site="", format=nil)
+      "#{site}/oauth/token?grant_type=client_credentials"
+    end
+
+    def self.ref_name
+      "access_token"
+    end
+  end
+
+  class PurchaseOrder
+    include ::AssayDepot::DatabaseModel
+
+    def self.endpoint(id=nil, format="json")
+      get_endpoint(id, "purchase_orders", format)
+    end
+
+    def self.ref_name
+      "purchase_orders"
+    end
+  end
+
+  class List
+    include ::AssayDepot::DatabaseModel
+
+    def self.create(slug, name)
+      post(body: { slug: slug, name: name })
+    end
+
+    def self.endpoint(id=nil, format="json")
+      get_endpoint(id, "dynamic_lists", format)
+    end
+
+    def self.ref_name
+      "dynamic_lists"
+    end
+  end
+
+  class ListItem
+    include ::AssayDepot::SearchModel
+
+    def self.endpoint(id, format="json")
+      if (id.is_a?(Array) && id.length > 1)
+        url = "/dynamic_lists/#{id[0]}/items/#{id[1]}.#{format}"
+      else
+        url = "/dynamic_lists/#{id.is_a?(Array) ? id[0] : id}/items.#{format}"
+      end
+      url
+    end
+
+    def self.ref_name
+      "items"
+    end
+  end
+end