asciichem 0.29.2 → 0.30.0

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: f372a8539906c658a399b015255e574de5feb73d1b5e7183958901681bfbce34
-  data.tar.gz: 7269dc4ad6e39e7c5ea6726b54a8ffe1508c039bdf9ced5c0a74e23efdc9b00f
+  metadata.gz: cf3a968f977add504a84afdbeb3d5d231b959688f4d9c9ac70e424a251ea2f75
+  data.tar.gz: 8b8c12366ce9f05f44058b897b474f226dea561568ee6c3e17820dda4c5bd4f7
 SHA512:
-  metadata.gz: 6f936bc0e95907d589c0095d34e4e65c554dcbdccd276aab7186db8f1218cbb179652b082f088f1b70a76391e830db53de2259ea8d333b64dd85ba367b16c610
-  data.tar.gz: 63d979830e4a8ab9aca450006a9740e83428e26073323af0ed4f8ddeed4be6f7aecb8bcfe1e5173f7a6049f92ff8b0a8e0a2b374fbd13630ae00b0e9e7a0db60
+  metadata.gz: 6ae161dc4a0eef5ec494ee42a5c7e1280cddc02c0cfb3fa5701377bc6fcf82ddc32a37039b24ccaa2666959f39179d0fa7f7a48d0c91fca14829679bdbdc5e03
+  data.tar.gz: 47124baeb7589216a48176c718a7556536334203f1d01f941de501a186750cfe00dc7151589295790a16fb37efa5f688709eef28b9d88ad7f7da9e6191140207

data/CHANGELOG.md

@@ -3,6 +3,29 @@
 All notable changes to AsciiChem are documented here.
 This project follows [Semantic Versioning](https://semver.org/).
 
+## [0.30.0] - 2026-09-22
+
+### Changed
+- The XML layer migrates from Nokogiri to
+  [moxml](https://github.com/lutaml/moxml) — the adapter layer the
+  rest of the lutaml ecosystem (chemicalml, CML wire, metanorma
+  gems) already uses, so AsciiChem follows the consumer's
+  configured XML backend instead of pinning one. The gemspec
+  dependency changes accordingly (`nokogiri ~> 1.18` out, `moxml
+  ~> 0.5` in). MathML output is byte-identical to 0.29.3: the L2
+  corpus goldens pass unchanged, including empty-element
+  compaction and the `<?xml?>` declaration.
+
+## [0.29.3] - 2026-09-22
+
+### Changed
+- Dependency floors raised to the corpus-validated versions,
+  expressed pessimistically (`~>`): `lutaml-model ~> 0.8` (from
+  `>= 0.8, < 2`), `relaton-bib ~> 2.1` (from `>= 0.1, < 3`),
+  `plurimath ~> 0.11`, `nokogiri ~> 1.18`; `chemicalml`, `elkrb`,
+  `mml`, `parslet`, `thor` unchanged. Full suite green under the
+  raised floors (1985 examples).
+
 ## [0.29.2] - 2026-09-17
 
 ### Changed

data/Gemfile

@@ -5,6 +5,7 @@ source "https://rubygems.org"
 gemspec
 
 group :development do
+  gem "parsanol"
   gem "json_schemer", "~> 2.4"
   gem "benchmark", "~> 0.4"
   gem "benchmark-ips", "~> 2.14", require: false

data/asciichem.gemspec

@@ -33,14 +33,16 @@ Gem::Specification.new do |spec|
   spec.executables   = spec.files.grep(%r{^exe/}) { |f| File.basename(f) }
   spec.require_paths = ["lib"]
 
+  # Floors are the versions the corpus suite validates against
+  # (pessimistic ~>); raise them only with a full-suite run.
   spec.add_dependency "chemicalml", "~> 0.3.0"
   spec.add_dependency "elkrb", "~> 1.0"
-  spec.add_dependency "lutaml-model", ">= 0.8", "< 2"
+  spec.add_dependency "lutaml-model", "~> 0.8"
   spec.add_dependency "mml", "~> 2.3"
-  spec.add_dependency "nokogiri", "~> 1.16"
+  spec.add_dependency "moxml", "~> 0.5"
   spec.add_dependency "parslet", "~> 2.0"
-  spec.add_dependency "relaton-bib", ">= 0.1", "< 3"
-  spec.add_dependency "plurimath", "~> 0.8"
+  spec.add_dependency "relaton-bib", "~> 2.1"
+  spec.add_dependency "plurimath", "~> 0.11"
   spec.add_dependency "thor", "~> 1.3"
 
   spec.add_development_dependency "json_schemer", "~> 2.4"

data/benchmarks/README.md

@@ -168,3 +168,65 @@ non-blocking (#36 bare repeated sibling captures remains open but
 is worked around in `ParsanolEngine` via single `.as(...)` capture
 wrapping).
 
+
+### Re-check 8 (2026-09-17, parsanol 1.3.27)
+
+All four upstream issues we filed are now closed (#36-#39; seven
+releases since 1.3.20). Validation:
+
+- Gate **221/221** through the shipped `ParsanolEngine`.
+- **#36 verified fixed at the source**: the bare-repeated-sibling
+  repro (`A->B->C`) now returns parslet's array-of-segment-hashes —
+  every match preserved. Our `split_merged_formula` seam in
+  `ParsanolEngine` is therefore a compatibility no-op on current
+  parsanol (it still normalizes the merged-hash shape for older
+  parsanol lines, which the opt-in floor allows).
+- **Perf: ratio-only this time.** The machine ran at load ~45
+  during measurement (parallel spec suites in other sessions), so
+  absolute numbers are meaningless — the parslet control itself
+  measured 15-20x slower than its quiet-machine baseline.
+  Same-process ratio: parsanol **~2.1x parslet** (8.3 vs 3.8 i/s,
+  and 8.8 vs 4.5 on the repeat), consistent with the 2.6x
+  quiet-machine figure from re-check 7.
+
+### Re-check 9 (2026-09-22, parsanol 1.3.49)
+
+Twenty-one releases since re-check 8, all perf-focused upstream
+(#59 roadmap: first-set BYTE_DISPATCH 1.3.29, VM memoisation
+1.3.35, VM phase-2 wiring 1.3.33, native dynamic bridge fixes
+1.3.40-1.3.41, `Parsanol::IncrementalSession` 1.3.42). Validation:
+
+- Gate **221/221** through the shipped `ParsanolEngine` (run on
+  1.3.48/1.3.49 within the same day — the line is moving fast).
+- **Perf: ratio-only again.** Load was 34-77 during measurement
+  (parslet control itself ran 8-12 i/s vs its quiet ~75), so
+  absolute numbers are excluded. Same-process ratio across three
+  runs: parsanol **1.7-3.2x parslet** (37.7/11.7, 19.0/11.1,
+  25.5/8.4), centring ~2.5-3x — consistent with the quiet-machine
+  2.6x from re-check 7; under contention the native parse path
+  degrades less than pure-Ruby parslet.
+- Upstream's incremental (`Parsanol::IncrementalSession`) and VM
+  memoisation work benefits the compat layer automatically; no
+  asciichem-side change needed or made.
+
+## Leptris note (2026-09-22, 1.9.221)
+
+Leptris is moxml's PREFERRED_ADAPTER: when installed above its
+binding floor, lutaml-model's XML layer (our CML wire path) runs on
+it. The version is fully transitive — lutaml-model constrains
+`~> 1.9.178`; asciichem pins nothing. The line moves fast
+(1.9.178 floor -> 1.9.222 within days).
+
+- **Compatibility:** full suite **1985/0** at 1.9.221.1, including
+  every CML round-trip and three-way wire spec. 1.9.222's namespace
+  fix (`xml:space` in the interleaved lane, reported upstream by
+  Canon) does not affect our documents; no action.
+- **Perf on our CML workload:** leptris is ~15-25% behind nokogiri
+  (round-trip 12.7 vs 15.0 i/s; emit 30.6 vs 39.8 i/s; load-noisy
+  ±20%). The workload is dominated by lutaml-model's Ruby-side
+  model building, not the adapter — leptris's speed gains target
+  its native parse lanes (HTML/XQuery per its release notes).
+  Measurement caveat: forcing an adapter for A/B runs requires
+  stubbing `leptris_preferred_available?` — lutaml's
+  `detect_xml_adapter` calls `runtime_default_adapter`, which
+  ignores `default_adapter=`.

data/lib/asciichem/cml/conditions_extensions.rb

@@ -1,6 +1,6 @@
 # frozen_string_literal: true
 
-require 'nokogiri'
+require 'moxml'
 
 module AsciiChem
   module Cml
@@ -26,11 +26,11 @@ module AsciiChem
         return xml if conditions_map.empty?
 
         # If native <conditionList> already present, skip aci: emit.
-        doc_check = Nokogiri::XML(xml)
+        doc_check = Moxml.parse(xml)
         return xml if doc_check.xpath('//cml:reaction/cml:conditionList',
                                       cml: Extensions::CML_NS).any?
 
-        doc = Nokogiri::XML(xml)
+        doc = Moxml.parse(xml)
         root = doc.root
         Extensions.ensure_namespace(root)
         apply_conditions(root, conditions_map)
@@ -40,7 +40,7 @@ module AsciiChem
       # Extract aci:conditionsAbove/Below from each <reaction>.
       # Returns `{ reaction_id => { above:, below: } }`.
       def self.extract(xml)
-        doc = Nokogiri::XML(xml)
+        doc = Moxml.parse(xml)
         result = {}
         doc.xpath('//cml:reaction', cml: Extensions::CML_NS).each do |el|
           id = el['id']

data/lib/asciichem/cml/extensions/atom_attributes.rb

@@ -1,6 +1,6 @@
 # frozen_string_literal: true
 
-require 'nokogiri'
+require 'moxml'
 
 module AsciiChem
   module Cml
@@ -39,9 +39,9 @@ module AsciiChem
         def self.inject(xml, extensions)
           return xml if extensions.empty?
 
-          doc = Nokogiri::XML(xml)
+          doc = Moxml.parse(xml)
           root = doc.root
-          unless root.namespaces.value?(Extensions::NAMESPACE)
+          unless root.namespaces.any? { |ns| ns.uri == Extensions::NAMESPACE }
             root.add_namespace(Extensions::PREFIX, Extensions::NAMESPACE)
           end
 
@@ -62,7 +62,7 @@ module AsciiChem
         # Extract aci: attributes from a CML XML string. Returns a map
         # `{ atom_id => { field: value } }` with Ruby-native types.
         def self.extract(xml)
-          doc = Nokogiri::XML(xml)
+          doc = Moxml.parse(xml)
           result = {}
           doc.xpath('//cml:atom', cml: Extensions::CML_NS).each do |atom_el|
             atom_id = atom_el['id']

data/lib/asciichem/cml/extensions/top_level.rb

@@ -1,6 +1,6 @@
 # frozen_string_literal: true
 
-require 'nokogiri'
+require 'moxml'
 require 'set'
 
 module AsciiChem
@@ -120,9 +120,9 @@ module AsciiChem
         def self.inject(xml, top_level)
           return xml if top_level.empty?
 
-          doc = Nokogiri::XML(xml)
+          doc = Moxml.parse(xml)
           root = doc.root
-          unless root.namespaces.value?(Extensions::NAMESPACE)
+          unless root.namespaces.any? { |ns| ns.uri == Extensions::NAMESPACE }
             root.add_namespace(Extensions::PREFIX, Extensions::NAMESPACE)
           end
           top_level.each { |entry| insert_element(doc, root, entry) }
@@ -133,7 +133,7 @@ module AsciiChem
         # array of `{ position:, element_name:, content: }` hashes in
         # ascending position order.
         def self.extract(xml)
-          doc = Nokogiri::XML(xml)
+          doc = Moxml.parse(xml)
           result = []
           element_names = HANDLERS.map(&:element_name)
           element_names.each do |name|
@@ -174,7 +174,7 @@ module AsciiChem
           def insert_element(doc, root, entry)
             element = doc.create_element("#{Extensions::PREFIX}:#{entry[:element_name]}")
             element['position'] = entry[:position].to_s
-            element.content = entry[:content]
+            element.add_child(doc.create_text(entry[:content]))
             # Insert before existing children so extensions appear at
             # the top of <cml>, which reads more naturally than appended.
             root.children.first&.add_previous_sibling(element) || root.add_child(element)

data/lib/asciichem/cml/extensions.rb

@@ -31,7 +31,7 @@ module AsciiChem
       # extension module that injects aci: attributes or elements
       # calls this instead of inlining its own check.
       def self.ensure_namespace(root)
-        return if root.namespaces.value?(NAMESPACE)
+        return if root.namespaces.any? { |ns| ns.uri == NAMESPACE }
 
         root.add_namespace(PREFIX, NAMESPACE)
       end

data/lib/asciichem/cml/group_extensions.rb

@@ -1,6 +1,6 @@
 # frozen_string_literal: true
 
-require 'nokogiri'
+require 'moxml'
 
 module AsciiChem
   module Cml
@@ -46,7 +46,7 @@ module AsciiChem
       def self.inject(xml, groups_by_molecule)
         return xml if groups_by_molecule.empty?
 
-        doc = Nokogiri::XML(xml)
+        doc = Moxml.parse(xml)
         root = doc.root
         Extensions.ensure_namespace(root)
 
@@ -77,7 +77,7 @@ module AsciiChem
       # molecule's ID. Each value is an array of record hashes:
       # `{ multiplicity:, bracket:, atom_ids: }`.
       def self.extract(xml)
-        doc = Nokogiri::XML(xml)
+        doc = Moxml.parse(xml)
         result = Hash.new { |h, k| h[k] = [] }
         doc.xpath('//cml:molecule', cml: Extensions::CML_NS).each do |mol_el|
           group_els = mol_el.xpath("./#{Extensions::PREFIX}:group",

data/lib/asciichem/cml/metadata_extensions.rb

@@ -1,6 +1,6 @@
 # frozen_string_literal: true
 
-require 'nokogiri'
+require 'moxml'
 
 module AsciiChem
   module Cml
@@ -28,7 +28,7 @@ module AsciiChem
         metadata_map = build_metadata_map(formula)
         return xml if metadata_map.empty?
 
-        doc = Nokogiri::XML(xml)
+        doc = Moxml.parse(xml)
         root = doc.root
         Extensions.ensure_namespace(root)
         apply_metadata(root, metadata_map)
@@ -38,7 +38,7 @@ module AsciiChem
       # Extract aci:meta-* attributes from each <molecule> in the XML.
       # Returns a map `{ molecule_id => { name => content } }`.
       def self.extract(xml)
-        doc = Nokogiri::XML(xml)
+        doc = Moxml.parse(xml)
         result = {}
         doc.xpath('//cml:molecule', cml: Extensions::CML_NS).each do |el|
           id = el['id']
@@ -132,11 +132,11 @@ module AsciiChem
         end
 
         def read_meta_attrs(element)
-          element.attributes.each_with_object({}) do |(name, attr), memo|
-            next unless name.start_with?(META_PREFIX)
+          element.attributes.each_with_object({}) do |attr, memo|
+            next unless attr.name.start_with?(META_PREFIX)
             next unless attr.namespace&.prefix == Extensions::PREFIX
 
-            memo[name.sub(META_PREFIX, '')] = attr.value
+            memo[attr.name.sub(META_PREFIX, '')] = attr.value
           end
         end
       end

data/lib/asciichem/cml/opaque_extensions.rb

@@ -1,6 +1,6 @@
 # frozen_string_literal: true
 
-require "nokogiri"
+require "moxml"
 
 module AsciiChem
   module Cml
@@ -42,9 +42,9 @@ module AsciiChem
       def self.inject(xml, formula)
         return xml if formula.nodes.empty?
 
-        doc = Nokogiri::XML(xml)
+        doc = Moxml.parse(xml)
         root = doc.root
-        wire_children = root.element_children
+        wire_children = root.children.select(&:element?)
         inserts = build_inserts(formula, wire_children.length)
         return xml if inserts.empty?
 
@@ -54,11 +54,11 @@ module AsciiChem
 
       def self.apply_inserts(root, wire_children, inserts)
         inserts.reverse_each do |wire_index, raw_xml|
-          fragment = Nokogiri::XML::DocumentFragment.parse(raw_xml)
+          nodes = Moxml.new.parse_fragment(raw_xml)
           if wire_index >= wire_children.length
-            root.add_child(fragment)
+            nodes.each { |n| root.add_child(n) }
           else
-            wire_children[wire_index].add_previous_sibling(fragment)
+            nodes.each { |n| wire_children[wire_index].add_previous_sibling(n) }
           end
         end
       end
@@ -88,10 +88,10 @@ module AsciiChem
       # document order. Also returns the cleaned XML with the unknown
       # elements removed (so chemicalml's parser doesn't trip).
       def self.extract(xml)
-        doc = Nokogiri::XML(xml)
+        doc = Moxml.parse(xml)
         root = doc.root
         result = []
-        children = root.element_children
+        children = root.children.select(&:element?)
         children.each_with_index do |child, idx|
           next if cml_namespace?(child)
           next if aci_namespace?(child)
@@ -107,14 +107,12 @@ module AsciiChem
       end
 
       def self.cml_namespace?(element)
-        ns = element.namespace
-        ns && ns.href == Extensions::CML_NS
+        element.namespace_uri == Extensions::CML_NS
       end
       private_class_method :cml_namespace?
 
       def self.aci_namespace?(element)
-        ns = element.namespace
-        ns && ns.href == Extensions::NAMESPACE
+        element.namespace_uri == Extensions::NAMESPACE
       end
       private_class_method :aci_namespace?
 

data/lib/asciichem/formatter/mathml.rb

@@ -1,6 +1,6 @@
 # frozen_string_literal: true
 
-require "nokogiri"
+require "moxml"
 require "mml"
 
 module AsciiChem
@@ -16,19 +16,26 @@ module AsciiChem
       MATHML_NS = "http://www.w3.org/1998/Math/MathML".freeze
 
       def initialize
-        @doc = Nokogiri::XML::Document.new
+        @doc = Moxml.new.create_document
       end
 
       # Model entry point. Returns a `<math>` element as a string.
       def visit_formula(formula)
-        math = el("math", xmlns: MATHML_NS)
+        math = @doc.create_element("math")
+        math.add_namespace(nil, MATHML_NS)
         mrow = el("mrow")
         formula.nodes.each { |n| mrow.add_child(render_node(n)) }
         math.add_child(mrow)
+        @doc.add_child(@doc.create_declaration("1.0", "UTF-8", nil))
         @doc.root = math
         # Native UTF-8 output preserves unicode arrow entities so specs
         # and downstream consumers see ⇌ and → instead of &#x21CC;.
-        @doc.to_xml(encoding: "UTF-8")
+        # Empty MathML elements are compacted back to <none/> form: the
+        # L2 corpus goldens are byte-exact across the TypeScript and
+        # Python implementations, whose serializers self-close.
+        @doc.to_xml(encoding: "UTF-8", indent: 2, indent_text: " ")
+            .gsub("<none></none>", "<none/>")
+            .gsub("<mprescripts></mprescripts>", "<mprescripts/>")
       end
 
       def visit_molecule(molecule)
@@ -72,7 +79,7 @@ module AsciiChem
         multi.add_child(base)
         multi.add_child(el("none"))
         multi.add_child(el("none"))
-        multi.add_child(Nokogiri::XML::Element.new("mprescripts", @doc))
+        multi.add_child(@doc.create_element("mprescripts"))
         multi.add_child(el("none"))
         multi.add_child(mn(atom.isotope))
         multi
@@ -211,12 +218,13 @@ module AsciiChem
           next unless attr_name
 
           Array(math.public_send(attr_name)).each do |child|
-            fragment = Nokogiri::XML::DocumentFragment.parse(child.to_xml)
-            fragment.children.each { |node| mrow.add_child(node) }
+            fragment = Moxml.new.parse_fragment(child.to_xml)
+            # parse_fragment returns the fragment's top-level nodes
+        fragment.each { |node| mrow.add_child(node) }
           end
         end
         mrow
-      rescue Mml::Error, Lutaml::Model::Error, Nokogiri::XML::SyntaxError
+      rescue Mml::Error, Lutaml::Model::Error, Moxml::ParseError
         el("mrow")
       end
 
@@ -388,30 +396,30 @@ module AsciiChem
         msup
       end
 
-      # -- Nokogiri element factories ------------------------------------
+      # -- Element factories ------------------------------------
 
       def el(name, attrs = {})
-        element = Nokogiri::XML::Element.new(name, @doc)
+        element = @doc.create_element(name)
         attrs.each { |k, v| element[k.to_s] = v }
         element
       end
 
       def mi(content)
         e = el("mi", mathvariant: "normal")
-        e.content = content.to_s
+        e.add_child(@doc.create_text(content.to_s))
         e
       end
 
       def mn(content)
-        e = el("mn"); e.content = content.to_s; e
+        e = el("mn"); e.add_child(@doc.create_text(content.to_s)); e
       end
 
       def mo(content)
-        e = el("mo"); e.content = content.to_s; e
+        e = el("mo"); e.add_child(@doc.create_text(content.to_s)); e
       end
 
       def mtext(content)
-        e = el("mtext"); e.content = content.to_s; e
+        e = el("mtext"); e.add_child(@doc.create_text(content.to_s)); e
       end
 
       # -- Beyond-formulas helpers -----------------------------------

data/lib/asciichem/formatter/structural_svg.rb

@@ -1,6 +1,6 @@
 # frozen_string_literal: true
 
-require 'nokogiri'
+require 'moxml'
 
 module AsciiChem
   module Formatter
@@ -88,7 +88,8 @@ module AsciiChem
       end
 
       def render_svg(result)
-        doc = Nokogiri::XML::Document.new
+        doc = Moxml.new.create_document
+        doc.add_child(doc.create_declaration('1.0', nil, nil))
         svg = build_svg_root(doc, result)
         bonds_first_then_atoms(result, doc, svg)
         doc.root = svg
@@ -96,14 +97,14 @@ module AsciiChem
       end
 
       def build_svg_root(doc, result)
-        svg = Nokogiri::XML::Element.new('svg', doc)
+        svg = doc.create_element('svg')
         svg['xmlns'] = 'http://www.w3.org/2000/svg'
         svg['width'] = result.width.to_s
         svg['height'] = result.height.to_s
         svg['viewBox'] = "0 0 #{result.width} #{result.height}"
         svg['role'] = 'img'
-        title = Nokogiri::XML::Element.new('title', doc)
-        title.content = title_text(result)
+        title = doc.create_element('title')
+        title.add_child(doc.create_text(title_text(result)))
         svg.add_child(title)
         svg
       end
@@ -136,7 +137,7 @@ module AsciiChem
         end
 
         def render_into(parent)
-          group = Nokogiri::XML::Element.new('g', @doc)
+          group = @doc.create_element('g')
           group.add_child(circle)
           group.add_child(label)
           parent.add_child(group)
@@ -145,7 +146,7 @@ module AsciiChem
         private
 
         def circle
-          el = Nokogiri::XML::Element.new('circle', @doc)
+          el = @doc.create_element('circle')
           el['cx'] = @atom.x.to_s
           el['cy'] = @atom.y.to_s
           el['r'] = StructuralSvg::ATOM_RADIUS.to_s
@@ -156,14 +157,14 @@ module AsciiChem
         end
 
         def label
-          el = Nokogiri::XML::Element.new('text', @doc)
+          el = @doc.create_element('text')
           el['x'] = @atom.x.to_s
           el['y'] = (@atom.y + 4).to_s
           el['text-anchor'] = 'middle'
           el['font-family'] = 'serif'
           el['font-size'] = '14'
           el['fill'] = color
-          el.content = @atom.element
+          el.add_child(@doc.create_text(@atom.element))
           el
         end
 
@@ -176,7 +177,7 @@ module AsciiChem
       # Renders a single bond between two positioned atoms. Dispatches
       # on bond kind via a registry of Procs. Each Proc receives the
       # renderer (for its public line/offset helpers) and returns an
-      # array of Nokogiri elements. Adding a new bond style is a new
+      # array of moxml elements. Adding a new bond style is a new
       # Proc + one registry entry — no edits to existing renderers.
       class BondRenderer
         def initialize(doc, from_atom, to_atom, kind)
@@ -210,7 +211,7 @@ module AsciiChem
         end
 
         def line(start_x, start_y, end_x, end_y)
-          el = Nokogiri::XML::Element.new('line', @doc)
+          el = @doc.create_element('line')
           el['x1'] = start_x.to_s
           el['y1'] = start_y.to_s
           el['x2'] = end_x.to_s
@@ -221,7 +222,7 @@ module AsciiChem
         end
 
         def polygon(points, fill:)
-          el = Nokogiri::XML::Element.new('polygon', @doc)
+          el = @doc.create_element('polygon')
           el['points'] = points.map { |x, y| "#{x},#{y}" }.join(' ')
           el['fill'] = fill
           el
@@ -247,7 +248,7 @@ module AsciiChem
         # -- Strategy registry --------------------------------------
         #
         # Each entry maps a bond kind symbol to a Proc that takes the
-        # renderer and returns an array of Nokogiri elements. Procs
+        # renderer and returns an array of moxml elements. Procs
         # use the public helpers above; nothing reaches into private
         # state.
 

data/lib/asciichem/version.rb

@@ -1,5 +1,5 @@
 # frozen_string_literal: true
 
 module AsciiChem
-  VERSION = "0.29.2"
+  VERSION = "0.30.0"
 end

data/lib/asciichem/xml_builder.rb

@@ -1,8 +1,8 @@
 # frozen_string_literal: true
 
 # Internal XML helper. Currently a thin marker module kept for parity
-# with future formatters that need XML construction without Nokogiri
-# (e.g. JRuby). The Mathml formatter uses Nokogiri directly.
+# with future formatters that need XML construction without a hard XML engine
+# dependency. The Mathml formatter uses moxml directly.
 module AsciiChem
   module XmlBuilder
   end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: asciichem
 version: !ruby/object:Gem::Version
-  version: 0.29.2
+  version: 0.30.0
 platform: ruby
 authors:
 - Ribose Inc.
@@ -41,22 +41,16 @@ dependencies:
   name: lutaml-model
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - ">="
+    - - "~>"
       - !ruby/object:Gem::Version
         version: '0.8'
-    - - "<"
-      - !ruby/object:Gem::Version
-        version: '2'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - ">="
+    - - "~>"
       - !ruby/object:Gem::Version
         version: '0.8'
-    - - "<"
-      - !ruby/object:Gem::Version
-        version: '2'
 - !ruby/object:Gem::Dependency
   name: mml
   requirement: !ruby/object:Gem::Requirement
@@ -72,19 +66,19 @@ dependencies:
       - !ruby/object:Gem::Version
         version: '2.3'
 - !ruby/object:Gem::Dependency
-  name: nokogiri
+  name: moxml
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '1.16'
+        version: '0.5'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '1.16'
+        version: '0.5'
 - !ruby/object:Gem::Dependency
   name: parslet
   requirement: !ruby/object:Gem::Requirement
@@ -103,36 +97,30 @@ dependencies:
   name: relaton-bib
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - ">="
-      - !ruby/object:Gem::Version
-        version: '0.1'
-    - - "<"
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: '3'
+        version: '2.1'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - ">="
-      - !ruby/object:Gem::Version
-        version: '0.1'
-    - - "<"
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: '3'
+        version: '2.1'
 - !ruby/object:Gem::Dependency
   name: plurimath
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '0.8'
+        version: '0.11'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '0.8'
+        version: '0.11'
 - !ruby/object:Gem::Dependency
   name: thor
   requirement: !ruby/object:Gem::Requirement