arvados-cli 0.1.20140707163414 → 0.1.20140707170034
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/bin/crunch-job +5 -14
- metadata +2 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
---
|
2
2
|
SHA1:
|
3
|
-
metadata.gz:
|
4
|
-
data.tar.gz:
|
3
|
+
metadata.gz: a6aec2818685e5f827f6b599a28ab5a6f2d1a094
|
4
|
+
data.tar.gz: 6078a7e29762149543b088f5c9dbed2197d84e08
|
5
5
|
SHA512:
|
6
|
-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
|
+
metadata.gz: 5d702e55f466d6eb565f0aff0663f51232dbf1a130fb845ee4844e992bd968046c9d0d367275fda2e8a05aa4428d9ddfc030e7576445c9c763f8b7054184e5ad
|
7
|
+
data.tar.gz: c38b3d306e73030e90bf032fcca7f5304265b793bc60e8b55a911a6ac8aa24bd7824e694fd95be5f622c5b05077ba5202c6a81da4ea7fe2758149b76c2860ce7
|
data/bin/crunch-job
CHANGED
@@ -96,15 +96,6 @@ $ENV{"CRUNCH_INSTALL"} = "$ENV{CRUNCH_TMP}/opt";
|
|
96
96
|
$ENV{"CRUNCH_WORK"} = $ENV{"JOB_WORK"}; # deprecated
|
97
97
|
mkdir ($ENV{"JOB_WORK"});
|
98
98
|
|
99
|
-
my $arv_cli;
|
100
|
-
|
101
|
-
if (defined $ENV{"ARV_CLI"}) {
|
102
|
-
$arv_cli = $ENV{"ARV_CLI"};
|
103
|
-
}
|
104
|
-
else {
|
105
|
-
$arv_cli = 'arv';
|
106
|
-
}
|
107
|
-
|
108
99
|
my $force_unlock;
|
109
100
|
my $git_dir;
|
110
101
|
my $jobspec;
|
@@ -841,7 +832,7 @@ if ($job_has_uuid) {
|
|
841
832
|
if ($collated_output)
|
842
833
|
{
|
843
834
|
eval {
|
844
|
-
open(my $orig_manifest, '-|', 'arv
|
835
|
+
open(my $orig_manifest, '-|', 'arv-get', $collated_output)
|
845
836
|
or die "failed to get collated manifest: $!";
|
846
837
|
# Read the original manifest, and strip permission hints from it,
|
847
838
|
# so we can put the result in a Collection.
|
@@ -1179,7 +1170,7 @@ sub fetch_block
|
|
1179
1170
|
my $hash = shift;
|
1180
1171
|
my ($keep, $child_out, $output_block);
|
1181
1172
|
|
1182
|
-
my $cmd = "
|
1173
|
+
my $cmd = "arv-get \Q$hash\E";
|
1183
1174
|
open($keep, '-|', $cmd) or die "fetch_block: $cmd: $!";
|
1184
1175
|
sysread($keep, $output_block, 64 * 1024 * 1024);
|
1185
1176
|
close $keep;
|
@@ -1191,7 +1182,7 @@ sub collate_output
|
|
1191
1182
|
Log (undef, "collate");
|
1192
1183
|
|
1193
1184
|
my ($child_out, $child_in);
|
1194
|
-
my $pid = open2($child_out, $child_in,
|
1185
|
+
my $pid = open2($child_out, $child_in, 'arv-put', '--raw');
|
1195
1186
|
my $joboutput;
|
1196
1187
|
for (@jobstep)
|
1197
1188
|
{
|
@@ -1228,7 +1219,7 @@ sub collate_output
|
|
1228
1219
|
sysread($child_out, $joboutput, 64 * 1024 * 1024);
|
1229
1220
|
chomp($joboutput);
|
1230
1221
|
} else {
|
1231
|
-
Log (undef, "timed out reading from 'arv
|
1222
|
+
Log (undef, "timed out reading from 'arv-put'");
|
1232
1223
|
}
|
1233
1224
|
}
|
1234
1225
|
waitpid($pid, 0);
|
@@ -1341,7 +1332,7 @@ sub save_meta
|
|
1341
1332
|
return if $justcheckpoint; # checkpointing is not relevant post-Warehouse.pm
|
1342
1333
|
|
1343
1334
|
$local_logfile->flush;
|
1344
|
-
my $cmd = "
|
1335
|
+
my $cmd = "arv-put --filename ''\Q$keep_logfile\E "
|
1345
1336
|
. quotemeta($local_logfile->filename);
|
1346
1337
|
my $loglocator = `$cmd`;
|
1347
1338
|
die "system $cmd failed: $?" if $?;
|
metadata
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: arvados-cli
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.1.
|
4
|
+
version: 0.1.20140707170034
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Arvados Authors
|
@@ -166,7 +166,7 @@ dependencies:
|
|
166
166
|
- - "<"
|
167
167
|
- !ruby/object:Gem::Version
|
168
168
|
version: 1.0.0
|
169
|
-
description: This is the Arvados SDK CLI gem, git revision
|
169
|
+
description: This is the Arvados SDK CLI gem, git revision 0951c8832286665dd3b2eafd829a2dab0630ade8
|
170
170
|
email: gem-dev@curoverse.com
|
171
171
|
executables:
|
172
172
|
- arv
|