arvados-cli 0.1.20140707163414 → 0.1.20140707170034
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- checksums.yaml +4 -4
- data/bin/crunch-job +5 -14
- metadata +2 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
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---
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2
2
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SHA1:
|
3
|
-
metadata.gz:
|
4
|
-
data.tar.gz:
|
3
|
+
metadata.gz: a6aec2818685e5f827f6b599a28ab5a6f2d1a094
|
4
|
+
data.tar.gz: 6078a7e29762149543b088f5c9dbed2197d84e08
|
5
5
|
SHA512:
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6
|
-
metadata.gz:
|
7
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-
data.tar.gz:
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6
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+
metadata.gz: 5d702e55f466d6eb565f0aff0663f51232dbf1a130fb845ee4844e992bd968046c9d0d367275fda2e8a05aa4428d9ddfc030e7576445c9c763f8b7054184e5ad
|
7
|
+
data.tar.gz: c38b3d306e73030e90bf032fcca7f5304265b793bc60e8b55a911a6ac8aa24bd7824e694fd95be5f622c5b05077ba5202c6a81da4ea7fe2758149b76c2860ce7
|
data/bin/crunch-job
CHANGED
@@ -96,15 +96,6 @@ $ENV{"CRUNCH_INSTALL"} = "$ENV{CRUNCH_TMP}/opt";
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96
96
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$ENV{"CRUNCH_WORK"} = $ENV{"JOB_WORK"}; # deprecated
|
97
97
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mkdir ($ENV{"JOB_WORK"});
|
98
98
|
|
99
|
-
my $arv_cli;
|
100
|
-
|
101
|
-
if (defined $ENV{"ARV_CLI"}) {
|
102
|
-
$arv_cli = $ENV{"ARV_CLI"};
|
103
|
-
}
|
104
|
-
else {
|
105
|
-
$arv_cli = 'arv';
|
106
|
-
}
|
107
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-
|
108
99
|
my $force_unlock;
|
109
100
|
my $git_dir;
|
110
101
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my $jobspec;
|
@@ -841,7 +832,7 @@ if ($job_has_uuid) {
|
|
841
832
|
if ($collated_output)
|
842
833
|
{
|
843
834
|
eval {
|
844
|
-
open(my $orig_manifest, '-|', 'arv
|
835
|
+
open(my $orig_manifest, '-|', 'arv-get', $collated_output)
|
845
836
|
or die "failed to get collated manifest: $!";
|
846
837
|
# Read the original manifest, and strip permission hints from it,
|
847
838
|
# so we can put the result in a Collection.
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@@ -1179,7 +1170,7 @@ sub fetch_block
|
|
1179
1170
|
my $hash = shift;
|
1180
1171
|
my ($keep, $child_out, $output_block);
|
1181
1172
|
|
1182
|
-
my $cmd = "
|
1173
|
+
my $cmd = "arv-get \Q$hash\E";
|
1183
1174
|
open($keep, '-|', $cmd) or die "fetch_block: $cmd: $!";
|
1184
1175
|
sysread($keep, $output_block, 64 * 1024 * 1024);
|
1185
1176
|
close $keep;
|
@@ -1191,7 +1182,7 @@ sub collate_output
|
|
1191
1182
|
Log (undef, "collate");
|
1192
1183
|
|
1193
1184
|
my ($child_out, $child_in);
|
1194
|
-
my $pid = open2($child_out, $child_in,
|
1185
|
+
my $pid = open2($child_out, $child_in, 'arv-put', '--raw');
|
1195
1186
|
my $joboutput;
|
1196
1187
|
for (@jobstep)
|
1197
1188
|
{
|
@@ -1228,7 +1219,7 @@ sub collate_output
|
|
1228
1219
|
sysread($child_out, $joboutput, 64 * 1024 * 1024);
|
1229
1220
|
chomp($joboutput);
|
1230
1221
|
} else {
|
1231
|
-
Log (undef, "timed out reading from 'arv
|
1222
|
+
Log (undef, "timed out reading from 'arv-put'");
|
1232
1223
|
}
|
1233
1224
|
}
|
1234
1225
|
waitpid($pid, 0);
|
@@ -1341,7 +1332,7 @@ sub save_meta
|
|
1341
1332
|
return if $justcheckpoint; # checkpointing is not relevant post-Warehouse.pm
|
1342
1333
|
|
1343
1334
|
$local_logfile->flush;
|
1344
|
-
my $cmd = "
|
1335
|
+
my $cmd = "arv-put --filename ''\Q$keep_logfile\E "
|
1345
1336
|
. quotemeta($local_logfile->filename);
|
1346
1337
|
my $loglocator = `$cmd`;
|
1347
1338
|
die "system $cmd failed: $?" if $?;
|
metadata
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: arvados-cli
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.1.
|
4
|
+
version: 0.1.20140707170034
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Arvados Authors
|
@@ -166,7 +166,7 @@ dependencies:
|
|
166
166
|
- - "<"
|
167
167
|
- !ruby/object:Gem::Version
|
168
168
|
version: 1.0.0
|
169
|
-
description: This is the Arvados SDK CLI gem, git revision
|
169
|
+
description: This is the Arvados SDK CLI gem, git revision 0951c8832286665dd3b2eafd829a2dab0630ade8
|
170
170
|
email: gem-dev@curoverse.com
|
171
171
|
executables:
|
172
172
|
- arv
|