arvados-cli 0.1.20140415111149 → 0.1.20140415171002
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- checksums.yaml +4 -4
- data/bin/crunch-job +12 -3
- metadata +2 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
|
+
metadata.gz: 8e5bff96b6197f74a2595a83b33bad5c43a261d1
|
4
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+
data.tar.gz: 3b3218c7638c6982eed06cdd9a8d63730f9502e8
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5
5
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SHA512:
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6
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-
metadata.gz:
|
7
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-
data.tar.gz:
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6
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+
metadata.gz: c8575fe11b6d0c51b44abdea405563772a5a203936b6c6c249d6fa6eb1379eebbcb00a7e294de412f2945bdf1bb4cff019458fb897722ba3da096e646b0593d8
|
7
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+
data.tar.gz: 712617c534e52128082a424df200bf2f0ae9da074c58cfefb2ba2042a5a7a970b791d50332a957c12355c574328f9071115a4e2f318662604835b52c48a0a6ad
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data/bin/crunch-job
CHANGED
@@ -95,6 +95,15 @@ $ENV{"CRUNCH_INSTALL"} = "$ENV{CRUNCH_TMP}/opt";
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95
95
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$ENV{"CRUNCH_WORK"} = $ENV{"JOB_WORK"}; # deprecated
|
96
96
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mkdir ($ENV{"JOB_WORK"});
|
97
97
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|
98
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+
my $arv_cli;
|
99
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+
|
100
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+
if (defined $ENV{"ARV_CLI"}) {
|
101
|
+
$arv_cli = $ENV{"ARV_CLI"};
|
102
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+
}
|
103
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+
else {
|
104
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+
$arv_cli = 'arv';
|
105
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+
}
|
106
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+
|
98
107
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my $force_unlock;
|
99
108
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my $git_dir;
|
100
109
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my $jobspec;
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@@ -1074,7 +1083,7 @@ sub fetch_block
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|
1074
1083
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my $hash = shift;
|
1075
1084
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my ($keep, $child_out, $output_block);
|
1076
1085
|
|
1077
|
-
my $cmd = "
|
1086
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+
my $cmd = "$arv_cli keep get \Q$hash\E";
|
1078
1087
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open($keep, '-|', $cmd) or die "fetch_block: $cmd: $!";
|
1079
1088
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sysread($keep, $output_block, 64 * 1024 * 1024);
|
1080
1089
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close $keep;
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@@ -1086,7 +1095,7 @@ sub collate_output
|
|
1086
1095
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Log (undef, "collate");
|
1087
1096
|
|
1088
1097
|
my ($child_out, $child_in);
|
1089
|
-
my $pid = open2($child_out, $child_in,
|
1098
|
+
my $pid = open2($child_out, $child_in, $arv_cli, 'keep', 'put', '--raw');
|
1090
1099
|
my $joboutput;
|
1091
1100
|
for (@jobstep)
|
1092
1101
|
{
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@@ -1236,7 +1245,7 @@ sub save_meta
|
|
1236
1245
|
return if $justcheckpoint; # checkpointing is not relevant post-Warehouse.pm
|
1237
1246
|
|
1238
1247
|
$local_logfile->flush;
|
1239
|
-
my $cmd = "
|
1248
|
+
my $cmd = "$arv_cli keep put --filename ''\Q$keep_logfile\E "
|
1240
1249
|
. quotemeta($local_logfile->filename);
|
1241
1250
|
my $loglocator = `$cmd`;
|
1242
1251
|
die "system $cmd failed: $?" if $?;
|
metadata
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: arvados-cli
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.1.
|
4
|
+
version: 0.1.20140415171002
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Arvados Authors
|
@@ -146,7 +146,7 @@ dependencies:
|
|
146
146
|
- - ~>
|
147
147
|
- !ruby/object:Gem::Version
|
148
148
|
version: '0.8'
|
149
|
-
description: This is the Arvados SDK CLI gem, git revision
|
149
|
+
description: This is the Arvados SDK CLI gem, git revision 52b3716d78c410806e8aaea89994b39015694258
|
150
150
|
email: gem-dev@curoverse.com
|
151
151
|
executables:
|
152
152
|
- arv
|