arvados-cli 0.1.20160302171627 → 0.1.20160302214005
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/bin/crunch-job +32 -27
- metadata +2 -2
    
        checksums.yaml
    CHANGED
    
    | @@ -1,7 +1,7 @@ | |
| 1 1 | 
             
            ---
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            SHA1:
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              metadata.gz:  | 
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              data.tar.gz:  | 
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              metadata.gz: 934d2d0195d5d124aa9c48264e9e414d97ccd7a5
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              data.tar.gz: dfede012720bfd95eace32c676c41d905c7d3ef9
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            SHA512:
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              metadata.gz:  | 
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              data.tar.gz:  | 
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              metadata.gz: a9486905dc79dc8c58059f73e622e3dfc56d35de679bde9b7dfd771fd2f53510e13e8998f841715eadf7df5f661f1c3712dafea6b9bfe5dfcd8edcd39a75d2ba
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| 7 | 
            +
              data.tar.gz: 70be25de9c616b3f703f7d9bc4b22152d9bb20636a932424e8d9e5b5ef9e972c1b3c62b0407f3e776524718efb013bd9a807767d2e04256fd596da3a7ecbdd40
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        data/bin/crunch-job
    CHANGED
    
    | @@ -1134,7 +1134,9 @@ sub update_progress_stats | |
| 1134 1134 | 
             
            sub reapchildren
         | 
| 1135 1135 | 
             
            {
         | 
| 1136 1136 | 
             
              my $children_reaped = 0;
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| 1137 | 
            -
               | 
| 1137 | 
            +
              my @successful_task_uuids = ();
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| 1138 | 
            +
             | 
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            +
              while((my $pid = waitpid (-1, WNOHANG)) > 0)
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| 1138 1140 | 
             
              {
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| 1139 1141 | 
             
                my $childstatus = $?;
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| 1140 1142 |  | 
| @@ -1207,8 +1209,9 @@ sub reapchildren | |
| 1207 1209 | 
             
                  push @jobstep_todo, $jobstepidx;
         | 
| 1208 1210 | 
             
                  $Job->{'tasks_summary'}->{'failed'}++;
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| 1209 1211 | 
             
                }
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| 1210 | 
            -
                else
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| 1212 | 
            +
                else # task_success
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| 1211 1213 | 
             
                {
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            +
                  push @successful_task_uuids, $Jobstep->{'arvados_task'}->{uuid};
         | 
| 1212 1215 | 
             
                  ++$thisround_succeeded;
         | 
| 1213 1216 | 
             
                  $slot[$proc{$pid}->{slot}]->{node}->{losing_streak} = 0;
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| 1214 1217 | 
             
                  $slot[$proc{$pid}->{slot}]->{node}->{hold_until} = 0;
         | 
| @@ -1231,34 +1234,36 @@ sub reapchildren | |
| 1231 1234 | 
             
                push @freeslot, $proc{$pid}->{slot};
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| 1232 1235 | 
             
                delete $proc{$pid};
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| 1233 1236 |  | 
| 1234 | 
            -
                if ($task_success) {
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| 1235 | 
            -
                  # Load new tasks
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| 1236 | 
            -
                  my $newtask_list = [];
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| 1237 | 
            -
                  my $newtask_results;
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| 1238 | 
            -
                  do {
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| 1239 | 
            -
                    $newtask_results = api_call(
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| 1240 | 
            -
                      "job_tasks/list",
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| 1241 | 
            -
                      'where' => {
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| 1242 | 
            -
                        'created_by_job_task_uuid' => $Jobstep->{'arvados_task'}->{uuid}
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| 1243 | 
            -
                      },
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| 1244 | 
            -
                      'order' => 'qsequence',
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| 1245 | 
            -
                      'offset' => scalar(@$newtask_list),
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| 1246 | 
            -
                        );
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| 1247 | 
            -
                    push(@$newtask_list, @{$newtask_results->{items}});
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| 1248 | 
            -
                  } while (@{$newtask_results->{items}});
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| 1249 | 
            -
                  foreach my $arvados_task (@$newtask_list) {
         | 
| 1250 | 
            -
                    my $jobstep = {
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            -
                      'level' => $arvados_task->{'sequence'},
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| 1252 | 
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                      'failures' => 0,
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                      'arvados_task' => $arvados_task
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| 1254 | 
            -
                    };
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| 1255 | 
            -
                    push @jobstep, $jobstep;
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| 1256 | 
            -
                    push @jobstep_todo, $#jobstep;
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| 1257 | 
            -
                  }
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| 1258 | 
            -
                }
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| 1259 1237 | 
             
                $progress_is_dirty = 1;
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| 1260 1238 | 
             
              }
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| 1261 1239 |  | 
| 1240 | 
            +
              if (scalar(@successful_task_uuids) > 0)
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            +
              {
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            +
                Log (undef, sprintf("%d tasks exited (%d succeeded), checking for new tasks from API server.", $children_reaped, scalar(@successful_task_uuids)));
         | 
| 1243 | 
            +
                # Load new tasks
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            +
                my $newtask_list = [];
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| 1245 | 
            +
                my $newtask_results;
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| 1246 | 
            +
                do {
         | 
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            +
                  $newtask_results = api_call(
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                    "job_tasks/list",
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            +
                    'filters' => [["created_by_job_task_uuid","in",\@successful_task_uuids]],
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            +
                    'order' => 'qsequence',
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                    'offset' => scalar(@$newtask_list),
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                      );
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                  push(@$newtask_list, @{$newtask_results->{items}});
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                } while (@{$newtask_results->{items}});
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            +
                Log (undef, sprintf("Got %d new tasks from API server.", scalar(@$newtask_list)));
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            +
                foreach my $arvados_task (@$newtask_list) {
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            +
                  my $jobstep = {
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            +
                    'level' => $arvados_task->{'sequence'},
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            +
                    'failures' => 0,
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            +
                    'arvados_task' => $arvados_task
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| 1261 | 
            +
                  };
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| 1262 | 
            +
                  push @jobstep, $jobstep;
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| 1263 | 
            +
                  push @jobstep_todo, $#jobstep;
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| 1264 | 
            +
                }
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            +
              }
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| 1266 | 
            +
             | 
| 1262 1267 | 
             
              return $children_reaped;
         | 
| 1263 1268 | 
             
            }
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| 1264 1269 |  | 
    
        metadata
    CHANGED
    
    | @@ -1,7 +1,7 @@ | |
| 1 1 | 
             
            --- !ruby/object:Gem::Specification
         | 
| 2 2 | 
             
            name: arvados-cli
         | 
| 3 3 | 
             
            version: !ruby/object:Gem::Version
         | 
| 4 | 
            -
              version: 0.1. | 
| 4 | 
            +
              version: 0.1.20160302214005
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            platform: ruby
         | 
| 6 6 | 
             
            authors:
         | 
| 7 7 | 
             
            - Arvados Authors
         | 
| @@ -178,7 +178,7 @@ dependencies: | |
| 178 178 | 
             
                - - "<"
         | 
| 179 179 | 
             
                  - !ruby/object:Gem::Version
         | 
| 180 180 | 
             
                    version: 1.0.0
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            -
            description: Arvados command line tools, git commit  | 
| 181 | 
            +
            description: Arvados command line tools, git commit ec51cd72eabf0f0bbebf7cd979d1a23a1319a416
         | 
| 182 182 | 
             
            email: gem-dev@curoverse.com
         | 
| 183 183 | 
             
            executables:
         | 
| 184 184 | 
             
            - arv
         |