arvados-cli 0.1.20150128223752 → 0.1.20150205181653
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- checksums.yaml +4 -4
- data/bin/crunch-job +9 -7
- metadata +3 -3
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 5db96a060492f026b5db1ffa822ff05f4fa98226
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4
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+
data.tar.gz: c27efe20246f3b4dae343bbc1d4181779bec024e
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 0b54438c836bf61639440d8600863079dc19f3b2c33b76c3fb82f9cb175976042be3493647859d75ca4e3a1b5f765a6272b891a716a9b0dad77666972db8735a
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7
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+
data.tar.gz: 5aea6d033f7dd3c7ba628fc6a31fa68d838fa590ced005ec3f363cacbff7b60437f86e23a245bc7f6351555e74439170738a1bc71dfc859be85f32746aa8ca7f
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data/bin/crunch-job
CHANGED
@@ -1274,10 +1274,10 @@ sub fetch_block
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1274
1274
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return $output_block;
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1275
1275
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}
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1276
1276
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1277
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-
#
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1278
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-
# output
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1279
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-
#
|
1280
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-
#
|
1277
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+
# Create a collection by concatenating the output of all tasks (each
|
1278
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+
# task's output is either a manifest fragment, a locator for a
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1279
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+
# manifest fragment stored in Keep, or nothing at all). Return the
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1280
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+
# portable_data_hash of the new collection.
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1281
1281
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sub create_output_collection
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1282
1282
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{
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1283
1283
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Log (undef, "collate");
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@@ -1292,10 +1292,11 @@ sub create_output_collection
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1292
1292
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'.execute()["portable_data_hash"]'
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1293
1293
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);
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1294
1294
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|
1295
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+
my $task_idx = -1;
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1295
1296
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for (@jobstep)
|
1296
1297
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{
|
1297
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-
|
1298
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-
|
1298
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+
++$task_idx;
|
1299
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+
next unless exists $_->{'arvados_task'}->{'output'};
|
1299
1300
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my $output = $_->{'arvados_task'}->{output};
|
1300
1301
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if ($output !~ /^[0-9a-f]{32}(\+\S+)*$/)
|
1301
1302
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{
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@@ -1307,7 +1308,8 @@ sub create_output_collection
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|
1307
1308
|
}
|
1308
1309
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else
|
1309
1310
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{
|
1310
|
-
|
1311
|
+
my $uuid = $_->{'arvados_task'}->{'uuid'};
|
1312
|
+
Log (undef, "Error retrieving '$output' output by task $task_idx ($uuid)");
|
1311
1313
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$main::success = 0;
|
1312
1314
|
}
|
1313
1315
|
}
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metadata
CHANGED
@@ -1,14 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
|
2
2
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name: arvados-cli
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.1.
|
4
|
+
version: 0.1.20150205181653
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5
5
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platform: ruby
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6
6
|
authors:
|
7
7
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- Arvados Authors
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date: 2015-
|
11
|
+
date: 2015-02-05 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: arvados
|
@@ -178,7 +178,7 @@ dependencies:
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|
178
178
|
- - "<"
|
179
179
|
- !ruby/object:Gem::Version
|
180
180
|
version: 1.0.0
|
181
|
-
description: Arvados command line tools, git commit
|
181
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+
description: Arvados command line tools, git commit 1e2e0e4f14a730ba1bbea6a4ced5d87ea2766c35
|
182
182
|
email: gem-dev@curoverse.com
|
183
183
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executables:
|
184
184
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- arv
|