arvados-cli 0.1.20140905131846 → 0.1.20140905165259
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- checksums.yaml +4 -4
- data/bin/arv-run-pipeline-instance +27 -9
- metadata +2 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 2c70283faebf5e804fd7514a0d302895d3741c49
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4
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+
data.tar.gz: 3df3bcaaa4885fd1fe5b434e04b40a2416b65fea
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 77012fcf4ea2c01d673f6b41fbe77a0ca08f78f2be6b81a3d1928d05efc469f55f032b106a13d1e9e9066274d7064ca58515f3fa80e6b3260ed83d393b4e1dd8
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7
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+
data.tar.gz: 6a6b9b5a08f72470e7f867cfdc1787b90ca0b819adb23b0d0e3169f03c0c9a483b2b1b72a2f40dd77c974002f58ff72146f9d231b85e57d5487822012106a424
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@@ -570,7 +570,6 @@ class WhRunPipelineInstance
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570
570
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pipeline_name = @template[:name]
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571
571
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end
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572
572
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if c[:output_name] != false
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573
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-
output_name = c[:output_name] || "Output of #{cname} of #{pipeline_name}"
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574
573
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# Create a collection located in the same project as the pipeline with the contents of the output.
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575
574
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portable_data_hash = c[:job][:output]
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576
575
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collections = $arv.collection.list(limit: 1,
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@@ -578,14 +577,33 @@ class WhRunPipelineInstance
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578
577
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select: ["portable_data_hash", "manifest_text"]
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579
578
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)[:items]
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580
579
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if collections.any?
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581
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-
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582
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-
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583
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-
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584
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-
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585
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-
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586
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-
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587
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-
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588
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-
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580
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+
name = c[:output_name] || "Output #{portable_data_hash[0..7]} of #{cname} of #{pipeline_name}"
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581
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+
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582
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+
# check if there is a name collision.
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583
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+
name_collisions = $arv.collection.list(filters: [["owner_uuid", "=", owner_uuid],
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584
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+
["name", "=", name]])[:items]
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585
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+
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586
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+
newcollection_actual = nil
|
587
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+
if name_collisions.any? and name_collisions.first[:portable_data_hash] == portable_data_hash
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588
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+
# There is already a collection with the same name and the
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589
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+
# same contents, so just point to that.
|
590
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+
newcollection_actual = name_collisions.first
|
591
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+
end
|
592
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+
|
593
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+
if newcollection_actual.nil?
|
594
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+
# Did not find a collection with the same name (or the
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595
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+
# collection has a different portable data hash) so create
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596
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+
# a new collection with ensure_unique_name: true.
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597
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+
newcollection = {
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598
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+
owner_uuid: owner_uuid,
|
599
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+
name: name,
|
600
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+
portable_data_hash: collections.first[:portable_data_hash],
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601
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+
manifest_text: collections.first[:manifest_text]
|
602
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+
}
|
603
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+
debuglog "Creating collection #{newcollection}", 0
|
604
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+
newcollection_actual = $arv.collection.create collection: newcollection, ensure_unique_name: true
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605
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+
end
|
606
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+
|
589
607
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c[:output_uuid] = newcollection_actual[:uuid]
|
590
608
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else
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591
609
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debuglog "Could not find a collection with portable data hash #{portable_data_hash}", 0
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metadata
CHANGED
@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: arvados-cli
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3
3
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version: !ruby/object:Gem::Version
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4
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-
version: 0.1.
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4
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+
version: 0.1.20140905165259
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5
5
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platform: ruby
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6
6
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authors:
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7
7
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- Arvados Authors
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@@ -166,7 +166,7 @@ dependencies:
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166
166
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- - "<"
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167
167
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- !ruby/object:Gem::Version
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168
168
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version: 1.0.0
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169
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-
description: This is the Arvados SDK CLI gem, git revision
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169
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+
description: This is the Arvados SDK CLI gem, git revision b60e52e031eeba96ef1a301660de2f8cec4518b6
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170
170
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email: gem-dev@curoverse.com
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171
171
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executables:
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172
172
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- arv
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