arvados-cli 0.1.20140903124817 → 0.1.20140904113336

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Files changed (3) hide show
  1. checksums.yaml +4 -4
  2. data/bin/crunch-job +7 -3
  3. metadata +3 -3
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
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+ metadata.gz: d5e24abbef098fca7cd0d9aa7439c3c62465bd0d
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+ data.tar.gz: 5e2a48f1ecbce58fcc120c6c30e2259a83d5626e
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  SHA512:
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- metadata.gz: b694c6b44aa8a733dded36b3e1d85fea81779ae4b7dc36bff8857643bc6d30bfee600de921b03d375f598498d64be8641d618bc19a6f64158c0f24b8283663be
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- data.tar.gz: 8f1b3448d94194d403b45c84986b4c6292078d80002da76987b9b1c5e5241048d898281b7d36f1e944df2e89d3e80bcc35ec87b7a2e2a05562fbe1942501e5c9
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+ metadata.gz: 18cf01011f8dfd82bc48f12bb934e675601c425a6c901990a3247c511fee5ae8f0b768051ba07767eb1f106b1fb998e520ebf825e412102f47796257e1f3907a
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+ data.tar.gz: 2535f9a99a5ab3847c2217d438ea5705a297471d893b5bd85da336e0cfc2e3834232a2f0c6931311b07fbf93b43ab07673d6f41f8919076f5a1c03ae4c62a035
data/bin/crunch-job CHANGED
@@ -656,6 +656,8 @@ for (my $todo_ptr = 0; $todo_ptr <= $#jobstep_todo; $todo_ptr ++)
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  if ($build_script)
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  {
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  $build_script_to_send = $build_script;
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+ $command .=
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+ "&& perl -";
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  }
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  $command .= "&& exec arv-mount --allow-other $ENV{TASK_KEEPMOUNT} --exec ";
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  if ($docker_hash)
@@ -668,12 +670,16 @@ for (my $todo_ptr = 0; $todo_ptr <= $#jobstep_todo; $todo_ptr ++)
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  $command .=
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  q{$(ip -o address show scope global |
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  gawk 'match($4, /^([0-9\.:]+)\//, x){print "--dns", x[1]}') };
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+ $command .= "--volume=\Q$ENV{CRUNCH_SRC}:/tmp/crunch-src:ro\E ";
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  $command .= "--volume=\Q$ENV{TASK_KEEPMOUNT}:/keep:ro\E ";
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  $command .= "--env=\QHOME=/home/crunch\E ";
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  while (my ($env_key, $env_val) = each %ENV)
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  {
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  if ($env_key =~ /^(ARVADOS|JOB|TASK)_/) {
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- if ($env_key eq "TASK_KEEPMOUNT") {
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+ if ($env_key eq "TASK_WORK") {
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+ $command .= "--env=\QTASK_WORK=/tmp/crunch-job\E ";
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+ }
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+ elsif ($env_key eq "TASK_KEEPMOUNT") {
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  $command .= "--env=\QTASK_KEEPMOUNT=/keep\E ";
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  }
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  else {
@@ -685,13 +691,11 @@ for (my $todo_ptr = 0; $todo_ptr <= $#jobstep_todo; $todo_ptr ++)
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  $command .= "--env=\QCRUNCH_SRC=/tmp/crunch-src\E ";
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  $command .= "\Q$docker_hash\E ";
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  $command .= "stdbuf --output=0 --error=0 ";
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- $command .= "perl - " if ($build_script);
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  $command .= "/tmp/crunch-src/crunch_scripts/" . $Job->{"script"};
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  } else {
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  # Non-docker run
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  $command .= "crunchstat -cgroup-root=/sys/fs/cgroup -poll=10000 ";
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  $command .= "stdbuf --output=0 --error=0 ";
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- $command .= "perl - " if ($build_script);
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  $command .= "$ENV{CRUNCH_SRC}/crunch_scripts/" . $Job->{"script"};
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  }
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metadata CHANGED
@@ -1,14 +1,14 @@
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  --- !ruby/object:Gem::Specification
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  name: arvados-cli
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  version: !ruby/object:Gem::Version
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- version: 0.1.20140903124817
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+ version: 0.1.20140904113336
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  platform: ruby
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  authors:
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  - Arvados Authors
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2014-09-03 00:00:00.000000000 Z
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+ date: 2014-09-04 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: arvados
@@ -166,7 +166,7 @@ dependencies:
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  - - "<"
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  - !ruby/object:Gem::Version
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  version: 1.0.0
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- description: This is the Arvados SDK CLI gem, git revision 0fdafcb846ec6bb34e4b8ae91ad62c1ccd328355
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+ description: This is the Arvados SDK CLI gem, git revision 0eb5711ade0f74e556b0a1c10909dbf0bdecb63f
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  email: gem-dev@curoverse.com
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  executables:
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  - arv