arvados-cli 0.1.20140807164620 → 0.1.20140808135152
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- checksums.yaml +4 -4
- data/bin/crunch-job +15 -14
- metadata +3 -3
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: be86bee39e46832415ed4640e405ee778a15330f
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4
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+
data.tar.gz: d4304fcf4fa668e4a3018db3ec2c7743bc69aa2d
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5
5
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SHA512:
|
6
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-
metadata.gz:
|
7
|
-
data.tar.gz:
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6
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+
metadata.gz: e429f432db9046e3a0279377fd6f62d8875fcc423787f59cddf0964c5b18bbd8b4eb13bcc67b25dfefcdbb6e0a2abef30762328c80a9d319c25c0f5c25c5f62e
|
7
|
+
data.tar.gz: d7a73c64743d2a71c959cf5c7b91e0b981329f9574552efe5dbb92d23eeca01533e9ce51ed7d4552a864041a2bfdda3b9dc992ab1e7fec22a06c6a7db4484d3b
|
data/bin/crunch-job
CHANGED
@@ -499,16 +499,17 @@ if (!$have_slurm)
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|
499
499
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500
500
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# If this job requires a Docker image, install that.
|
501
501
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my $docker_bin = "/usr/bin/docker.io";
|
502
|
-
my ($docker_locator, $docker_hash);
|
502
|
+
my ($docker_locator, $docker_stream, $docker_hash);
|
503
503
|
if ($docker_locator = $Job->{docker_image_locator}) {
|
504
|
-
$docker_hash =
|
504
|
+
($docker_stream, $docker_hash) = find_docker_image($docker_locator);
|
505
505
|
if (!$docker_hash)
|
506
506
|
{
|
507
507
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croak("No Docker image hash found from locator $docker_locator");
|
508
508
|
}
|
509
|
+
$docker_stream =~ s/^\.//;
|
509
510
|
my $docker_install_script = qq{
|
510
511
|
if ! $docker_bin images -q --no-trunc | grep -qxF \Q$docker_hash\E; then
|
511
|
-
arv-get \Q$docker_locator/$docker_hash.tar\E | $docker_bin load
|
512
|
+
arv-get \Q$docker_locator$docker_stream/$docker_hash.tar\E | $docker_bin load
|
512
513
|
fi
|
513
514
|
};
|
514
515
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my $docker_pid = fork();
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@@ -1466,19 +1467,19 @@ sub must_lock_now
|
|
1466
1467
|
}
|
1467
1468
|
}
|
1468
1469
|
|
1469
|
-
sub
|
1470
|
-
# Given a Keep locator,
|
1471
|
-
#
|
1470
|
+
sub find_docker_image {
|
1471
|
+
# Given a Keep locator, check to see if it contains a Docker image.
|
1472
|
+
# If so, return its stream name and Docker hash.
|
1473
|
+
# If not, return undef for both values.
|
1472
1474
|
my $locator = shift;
|
1473
|
-
my $
|
1474
|
-
|
1475
|
-
|
1476
|
-
|
1477
|
-
|
1478
|
-
|
1479
|
-
$docker_hash = lc($link->{name});
|
1475
|
+
if (my $image = $arv->{collections}->{get}->execute(uuid => $locator)) {
|
1476
|
+
my @file_list = @{$image->{files}};
|
1477
|
+
if ((scalar(@file_list) == 1) &&
|
1478
|
+
($file_list[0][1] =~ /^([0-9A-Fa-f]{64})\.tar$/)) {
|
1479
|
+
return ($file_list[0][0], $1);
|
1480
|
+
}
|
1480
1481
|
}
|
1481
|
-
return
|
1482
|
+
return (undef, undef);
|
1482
1483
|
}
|
1483
1484
|
|
1484
1485
|
__DATA__
|
metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: arvados-cli
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.1.
|
4
|
+
version: 0.1.20140808135152
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Arvados Authors
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date: 2014-08-
|
11
|
+
date: 2014-08-08 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: arvados
|
@@ -166,7 +166,7 @@ dependencies:
|
|
166
166
|
- - "<"
|
167
167
|
- !ruby/object:Gem::Version
|
168
168
|
version: 1.0.0
|
169
|
-
description: This is the Arvados SDK CLI gem, git revision
|
169
|
+
description: This is the Arvados SDK CLI gem, git revision eef298a7cf58771583b255fb0e3e1cfcbcdb6e48
|
170
170
|
email: gem-dev@curoverse.com
|
171
171
|
executables:
|
172
172
|
- arv
|