arvados-cli 0.1.20140114083750 → 0.1.20140117103233
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- data/bin/arv +2 -2
- data/bin/arv-tag +9 -11
- metadata +133 -102
- checksums.yaml +0 -7
data/bin/arv
CHANGED
@@ -10,9 +10,9 @@ if RUBY_VERSION < '1.9.3' then
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|
10
10
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EOS
|
11
11
|
end
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12
12
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|
13
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-
# read authentication data from ~/.arvados if present
|
13
|
+
# read authentication data from ~/.config/arvados if present
|
14
14
|
lineno = 0
|
15
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-
config_file = File.expand_path('~/.arvados')
|
15
|
+
config_file = File.expand_path('~/.config/arvados')
|
16
16
|
if File.exist? config_file then
|
17
17
|
File.open(config_file, 'r').each do |line|
|
18
18
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lineno = lineno + 1
|
data/bin/arv-tag
CHANGED
@@ -81,11 +81,7 @@ def tag_remove(tag, obj_uuids=nil)
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81
81
|
$stderr.puts "no tags found to remove"
|
82
82
|
end
|
83
83
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|
84
|
-
return
|
85
|
-
'kind' => 'arvados#linkList',
|
86
|
-
'items_available' => results.length,
|
87
|
-
'items' => results,
|
88
|
-
}
|
84
|
+
return results
|
89
85
|
end
|
90
86
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|
91
87
|
if RUBY_VERSION < '1.9.3' then
|
@@ -191,6 +187,11 @@ $arvados = $client.discovered_api('arvados', $arvados_api_version)
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|
191
187
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|
192
188
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results = []
|
193
189
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cmd = ARGV.shift
|
190
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+
|
191
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+
if ARGV.empty?
|
192
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+
usage
|
193
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+
end
|
194
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+
|
194
195
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case cmd
|
195
196
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when 'add'
|
196
197
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ARGV.each do |tag|
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@@ -201,9 +202,9 @@ when 'add'
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|
201
202
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when 'remove'
|
202
203
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ARGV.each do |tag|
|
203
204
|
if $options[:all] then
|
204
|
-
results.
|
205
|
+
results.concat tag_remove(tag)
|
205
206
|
else
|
206
|
-
results.
|
207
|
+
results.concat tag_remove(tag, $options[:object])
|
207
208
|
end
|
208
209
|
end
|
209
210
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else
|
@@ -218,10 +219,7 @@ elsif global_opts[:json] then
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|
218
219
|
puts Oj.dump(results)
|
219
220
|
else
|
220
221
|
results.each do |r|
|
221
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-
|
222
|
-
if r["items"] and r["kind"].match /list$/i
|
223
|
-
r['items'].each do |i| puts i['uuid'] end
|
224
|
-
elsif r['uuid'].nil?
|
222
|
+
if r['uuid'].nil?
|
225
223
|
abort("Response did not include a uuid:\n" +
|
226
224
|
Oj.dump(r, :indent => 1) +
|
227
225
|
"\n")
|
metadata
CHANGED
@@ -1,150 +1,181 @@
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|
1
|
-
--- !ruby/object:Gem::Specification
|
1
|
+
--- !ruby/object:Gem::Specification
|
2
2
|
name: arvados-cli
|
3
|
-
version: !ruby/object:Gem::Version
|
4
|
-
|
3
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+
version: !ruby/object:Gem::Version
|
4
|
+
hash: 40280234206489
|
5
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+
prerelease:
|
6
|
+
segments:
|
7
|
+
- 0
|
8
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+
- 1
|
9
|
+
- 20140117103233
|
10
|
+
version: 0.1.20140117103233
|
5
11
|
platform: ruby
|
6
|
-
authors:
|
12
|
+
authors:
|
7
13
|
- Arvados Authors
|
8
14
|
autorequire:
|
9
15
|
bindir: bin
|
10
16
|
cert_chain: []
|
11
|
-
|
12
|
-
|
13
|
-
|
17
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+
|
18
|
+
date: 2014-01-17 00:00:00 Z
|
19
|
+
dependencies:
|
20
|
+
- !ruby/object:Gem::Dependency
|
14
21
|
name: google-api-client
|
15
|
-
requirement: !ruby/object:Gem::Requirement
|
16
|
-
requirements:
|
17
|
-
- - '>='
|
18
|
-
- !ruby/object:Gem::Version
|
19
|
-
version: 0.6.3
|
20
|
-
type: :runtime
|
21
22
|
prerelease: false
|
22
|
-
|
23
|
-
|
24
|
-
|
25
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-
|
23
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+
requirement: &id001 !ruby/object:Gem::Requirement
|
24
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+
none: false
|
25
|
+
requirements:
|
26
|
+
- - ">="
|
27
|
+
- !ruby/object:Gem::Version
|
28
|
+
hash: 1
|
29
|
+
segments:
|
30
|
+
- 0
|
31
|
+
- 6
|
32
|
+
- 3
|
26
33
|
version: 0.6.3
|
27
|
-
- !ruby/object:Gem::Dependency
|
28
|
-
name: activesupport
|
29
|
-
requirement: !ruby/object:Gem::Requirement
|
30
|
-
requirements:
|
31
|
-
- - '>='
|
32
|
-
- !ruby/object:Gem::Version
|
33
|
-
version: 3.2.13
|
34
34
|
type: :runtime
|
35
|
+
version_requirements: *id001
|
36
|
+
- !ruby/object:Gem::Dependency
|
37
|
+
name: activesupport
|
35
38
|
prerelease: false
|
36
|
-
|
37
|
-
|
38
|
-
|
39
|
-
|
39
|
+
requirement: &id002 !ruby/object:Gem::Requirement
|
40
|
+
none: false
|
41
|
+
requirements:
|
42
|
+
- - ">="
|
43
|
+
- !ruby/object:Gem::Version
|
44
|
+
hash: 21
|
45
|
+
segments:
|
46
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+
- 3
|
47
|
+
- 2
|
48
|
+
- 13
|
40
49
|
version: 3.2.13
|
41
|
-
- !ruby/object:Gem::Dependency
|
42
|
-
name: json
|
43
|
-
requirement: !ruby/object:Gem::Requirement
|
44
|
-
requirements:
|
45
|
-
- - '>='
|
46
|
-
- !ruby/object:Gem::Version
|
47
|
-
version: 1.7.7
|
48
50
|
type: :runtime
|
51
|
+
version_requirements: *id002
|
52
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+
- !ruby/object:Gem::Dependency
|
53
|
+
name: json
|
49
54
|
prerelease: false
|
50
|
-
|
51
|
-
|
52
|
-
|
53
|
-
|
55
|
+
requirement: &id003 !ruby/object:Gem::Requirement
|
56
|
+
none: false
|
57
|
+
requirements:
|
58
|
+
- - ">="
|
59
|
+
- !ruby/object:Gem::Version
|
60
|
+
hash: 5
|
61
|
+
segments:
|
62
|
+
- 1
|
63
|
+
- 7
|
64
|
+
- 7
|
54
65
|
version: 1.7.7
|
55
|
-
- !ruby/object:Gem::Dependency
|
56
|
-
name: trollop
|
57
|
-
requirement: !ruby/object:Gem::Requirement
|
58
|
-
requirements:
|
59
|
-
- - '>='
|
60
|
-
- !ruby/object:Gem::Version
|
61
|
-
version: '2.0'
|
62
66
|
type: :runtime
|
67
|
+
version_requirements: *id003
|
68
|
+
- !ruby/object:Gem::Dependency
|
69
|
+
name: trollop
|
63
70
|
prerelease: false
|
64
|
-
|
65
|
-
|
66
|
-
|
67
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-
|
68
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-
|
69
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-
|
70
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-
|
71
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-
|
72
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-
|
73
|
-
|
74
|
-
- !ruby/object:Gem::Version
|
75
|
-
version: 1.3.3
|
71
|
+
requirement: &id004 !ruby/object:Gem::Requirement
|
72
|
+
none: false
|
73
|
+
requirements:
|
74
|
+
- - ">="
|
75
|
+
- !ruby/object:Gem::Version
|
76
|
+
hash: 3
|
77
|
+
segments:
|
78
|
+
- 2
|
79
|
+
- 0
|
80
|
+
version: "2.0"
|
76
81
|
type: :runtime
|
82
|
+
version_requirements: *id004
|
83
|
+
- !ruby/object:Gem::Dependency
|
84
|
+
name: andand
|
77
85
|
prerelease: false
|
78
|
-
|
79
|
-
|
80
|
-
|
81
|
-
|
86
|
+
requirement: &id005 !ruby/object:Gem::Requirement
|
87
|
+
none: false
|
88
|
+
requirements:
|
89
|
+
- - ">="
|
90
|
+
- !ruby/object:Gem::Version
|
91
|
+
hash: 29
|
92
|
+
segments:
|
93
|
+
- 1
|
94
|
+
- 3
|
95
|
+
- 3
|
82
96
|
version: 1.3.3
|
83
|
-
- !ruby/object:Gem::Dependency
|
84
|
-
name: oj
|
85
|
-
requirement: !ruby/object:Gem::Requirement
|
86
|
-
requirements:
|
87
|
-
- - '>='
|
88
|
-
- !ruby/object:Gem::Version
|
89
|
-
version: 2.0.3
|
90
97
|
type: :runtime
|
98
|
+
version_requirements: *id005
|
99
|
+
- !ruby/object:Gem::Dependency
|
100
|
+
name: oj
|
91
101
|
prerelease: false
|
92
|
-
|
93
|
-
|
94
|
-
|
95
|
-
|
102
|
+
requirement: &id006 !ruby/object:Gem::Requirement
|
103
|
+
none: false
|
104
|
+
requirements:
|
105
|
+
- - ">="
|
106
|
+
- !ruby/object:Gem::Version
|
107
|
+
hash: 9
|
108
|
+
segments:
|
109
|
+
- 2
|
110
|
+
- 0
|
111
|
+
- 3
|
96
112
|
version: 2.0.3
|
97
|
-
- !ruby/object:Gem::Dependency
|
98
|
-
name: curb
|
99
|
-
requirement: !ruby/object:Gem::Requirement
|
100
|
-
requirements:
|
101
|
-
- - ~>
|
102
|
-
- !ruby/object:Gem::Version
|
103
|
-
version: '0.8'
|
104
113
|
type: :runtime
|
114
|
+
version_requirements: *id006
|
115
|
+
- !ruby/object:Gem::Dependency
|
116
|
+
name: curb
|
105
117
|
prerelease: false
|
106
|
-
|
107
|
-
|
118
|
+
requirement: &id007 !ruby/object:Gem::Requirement
|
119
|
+
none: false
|
120
|
+
requirements:
|
108
121
|
- - ~>
|
109
|
-
- !ruby/object:Gem::Version
|
110
|
-
|
111
|
-
|
122
|
+
- !ruby/object:Gem::Version
|
123
|
+
hash: 27
|
124
|
+
segments:
|
125
|
+
- 0
|
126
|
+
- 8
|
127
|
+
version: "0.8"
|
128
|
+
type: :runtime
|
129
|
+
version_requirements: *id007
|
130
|
+
description: This is the Arvados SDK CLI gem, git revision 3055130be14ab26d68fd1c01a934870855ecbd5c
|
112
131
|
email: gem-dev@clinicalfuture.com
|
113
|
-
executables:
|
132
|
+
executables:
|
114
133
|
- arv
|
115
134
|
- arv-run-pipeline-instance
|
116
135
|
- arv-crunch-job
|
117
136
|
- arv-tag
|
118
137
|
extensions: []
|
138
|
+
|
119
139
|
extra_rdoc_files: []
|
120
|
-
|
140
|
+
|
141
|
+
files:
|
121
142
|
- bin/arv
|
122
143
|
- bin/arv-run-pipeline-instance
|
123
144
|
- bin/arv-crunch-job
|
124
145
|
- bin/arv-tag
|
125
146
|
- bin/crunch-job
|
126
147
|
homepage: http://arvados.org
|
127
|
-
licenses:
|
148
|
+
licenses:
|
128
149
|
- Apache License, Version 2.0
|
129
|
-
metadata: {}
|
130
150
|
post_install_message:
|
131
151
|
rdoc_options: []
|
132
|
-
|
152
|
+
|
153
|
+
require_paths:
|
133
154
|
- lib
|
134
|
-
required_ruby_version: !ruby/object:Gem::Requirement
|
135
|
-
|
136
|
-
|
137
|
-
|
138
|
-
|
139
|
-
|
140
|
-
|
141
|
-
|
142
|
-
|
143
|
-
|
155
|
+
required_ruby_version: !ruby/object:Gem::Requirement
|
156
|
+
none: false
|
157
|
+
requirements:
|
158
|
+
- - ">="
|
159
|
+
- !ruby/object:Gem::Version
|
160
|
+
hash: 3
|
161
|
+
segments:
|
162
|
+
- 0
|
163
|
+
version: "0"
|
164
|
+
required_rubygems_version: !ruby/object:Gem::Requirement
|
165
|
+
none: false
|
166
|
+
requirements:
|
167
|
+
- - ">="
|
168
|
+
- !ruby/object:Gem::Version
|
169
|
+
hash: 3
|
170
|
+
segments:
|
171
|
+
- 0
|
172
|
+
version: "0"
|
144
173
|
requirements: []
|
174
|
+
|
145
175
|
rubyforge_project:
|
146
|
-
rubygems_version:
|
176
|
+
rubygems_version: 1.8.24
|
147
177
|
signing_key:
|
148
|
-
specification_version:
|
178
|
+
specification_version: 3
|
149
179
|
summary: Arvados SDK CLI
|
150
180
|
test_files: []
|
181
|
+
|
checksums.yaml
DELETED
@@ -1,7 +0,0 @@
|
|
1
|
-
---
|
2
|
-
SHA1:
|
3
|
-
metadata.gz: 10c954c49f736c060b3ba558f1d7f422325f58ba
|
4
|
-
data.tar.gz: 2db16c0373569ba9db54c0919bc4bf858fafaf28
|
5
|
-
SHA512:
|
6
|
-
metadata.gz: a120d09636cfd08e121f490de8feeb5ccf29581452badcc751ffa1b56e55d9be39833a4b72aa9d250493014a5f946f3da45f63d9b9585a99ff853120ea414fda
|
7
|
-
data.tar.gz: 144cfdf671405b3e0b1b81f2ee2a4054727072ef684c0ebf3437d5493b19351f35ad3c6d843626eb2cff9818620de8319eb522163b1b9368d5b190ece0cda768
|