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apex-ruby 1.0.6

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+.\" Automatically generated by Pandoc 3.8.3
+.\"
+.TH "APEX" "1" "December 2025" ""
+.SH NAME
+apex \- Unified Markdown processor supporting CommonMark, GFM,
+MultiMarkdown, and Kramdown
+.SH SYNOPSIS
+\f[B]apex\f[R] [\f[I]options\f[R]] [\f[I]file\f[R]]
+.PP
+\f[B]apex\f[R] \(encombine [\f[I]files\f[R]\&...]
+.PP
+\f[B]apex\f[R] \(enmmd\-merge [\f[I]index files\f[R]\&...]
+.SH DESCRIPTION
+Apex is a unified Markdown processor that combines the best features
+from CommonMark, GitHub Flavored Markdown (GFM), MultiMarkdown,
+Kramdown, and Marked.
+One processor to rule them all.
+.PP
+If no file is specified, \f[B]apex\f[R] reads from stdin.
+.SH OPTIONS
+.SS Processing Modes
+.TP
+\f[B]\-m\f[R] \f[I]MODE\f[R], \f[B]\(enmode\f[R] \f[I]MODE\f[R]
+Processor mode: \f[B]commonmark\f[R], \f[B]gfm\f[R], \f[B]mmd\f[R] (or
+\f[B]multimarkdown\f[R]), \f[B]kramdown\f[R], or \f[B]unified\f[R]
+(default).
+Each mode enables different features and syntax compatibility.
+.SS Input/Output
+.TP
+\f[B]\-o\f[R] \f[I]FILE\f[R], \f[B]\(enoutput\f[R] \f[I]FILE\f[R]
+Write output to \f[I]FILE\f[R] instead of stdout.
+.TP
+\f[B]\-s\f[R], \f[B]\(enstandalone\f[R]
+Generate complete HTML document with \f[CR]<html>\f[R],
+\f[CR]<head>\f[R], and \f[CR]<body>\f[R] tags.
+.TP
+\f[B]\(enstyle\f[R] \f[I]FILE\f[R], \f[B]\(encss\f[R] \f[I]FILE\f[R]
+Link to CSS file(s) in document head (requires
+\f[B]\(enstandalone\f[R]).
+Can be used multiple times or accept comma\-separated list (e.g.,
+\f[CR]\-\-css style.css \-\-css syntax.css\f[R] or
+\f[CR]\-\-css style.css,syntax.css\f[R]).
+Overrides CSS metadata if specified.
+.TP
+\f[B]\(enembed\-css\f[R]
+When used with \f[B]\(encss FILE\f[R], read the CSS file(s) and embed
+their contents into \f[CR]<style>\f[R] tags in the document head instead
+of emitting \f[CR]<link rel=\(dqstylesheet\(dq>\f[R] tags.
+All specified stylesheets are embedded.
+.TP
+\f[B]\(encode\-highlight\f[R] \f[I]TOOL\f[R]
+Use external tool for syntax highlighting of code blocks.
+\f[I]TOOL\f[R] must be \f[B]pygments\f[R] (or \f[B]p\f[R],
+\f[B]pyg\f[R]) or \f[B]skylighting\f[R] (or \f[B]s\f[R], \f[B]sky\f[R]).
+Code blocks are sent to the external tool with their language specifier
+(if present) or with auto\-detection enabled.
+The highlighted HTML output replaces the original code block in the
+document.
+.TP
+\f[B]\(encode\-line\-numbers\f[R]
+Include line numbers in syntax\-highlighted code blocks.
+Requires \f[B]\(encode\-highlight\f[R].
+When used with Pygments, adds \f[CR]linenos=1\f[R] option.
+When used with Skylighting, adds \f[CR]\-n\f[R] flag.
+.TP
+\f[B]\(enhighlight\-language\-only\f[R]
+Only apply syntax highlighting to code blocks that have a language
+specified (via \f[CR]\(ga\(ga\(galanguage\f[R] or IAL).
+Code blocks without a language will be left unhighlighted.
+Requires \f[B]\(encode\-highlight\f[R].
+.TP
+\f[B]\(enscript\f[R] \f[I]VALUE\f[R]
+Inject \f[CR]<script>\f[R] tags either before \f[CR]</body>\f[R] in
+standalone mode or at the end of the HTML fragment in snippet mode.
+\f[I]VALUE\f[R] can be a path, a URL, or one of the following
+shorthands: \f[CR]mermaid\f[R], \f[CR]mathjax\f[R], \f[CR]katex\f[R],
+\f[CR]highlightjs\f[R], \f[CR]highlight.js\f[R], \f[CR]prism\f[R],
+\f[CR]prismjs\f[R], \f[CR]htmx\f[R], \f[CR]alpine\f[R],
+\f[CR]alpinejs\f[R].
+Can be used multiple times or with a comma\-separated list (e.g.,
+\f[CR]\-\-script mermaid,mathjax\f[R]).
+.TP
+\f[B]\(entitle\f[R] \f[I]TITLE\f[R]
+Document title (requires \f[B]\(enstandalone\f[R], default:
+\(lqDocument\(rq).
+.TP
+\f[B]\(enpretty\f[R]
+Pretty\-print HTML with indentation and whitespace.
+.TP
+\f[B]\(enaria\f[R]
+Add ARIA labels and accessibility attributes to HTML output.
+When enabled, adds:
+.PP
+\f[CR]aria\-label=\(dqTable of contents\(dq\f[R] to TOC navigation
+elements (\f[CR]<nav class=\(dqtoc\(dq>\f[R])
+.IP
+.EX
+\- \(garole=\(dqfigure\(dq\(ga to \(ga<figure>\(ga elements
+\- \(garole=\(dqtable\(dq\(ga to \(ga<table>\(ga elements
+\- \(gaid\(ga attributes to \(ga<figcaption>\(ga elements within
+  table figures (if missing)
+\- \(gaaria\-describedby\(ga attributes to tables linking them
+  to their captions
+.EE
+.PP
+This enhances screen reader support and makes the HTML output more
+accessible.
+Default: disabled.
+.SS Feature Flags
+.TP
+\f[B]\(enaccept\f[R]
+Accept all Critic Markup changes (apply edits).
+.TP
+\f[B]\(enreject\f[R]
+Reject all Critic Markup changes (revert edits).
+.TP
+\f[B]\(encode\-highlight\f[R] \f[I]TOOL\f[R]
+Use external tool for syntax highlighting of code blocks.
+\f[I]TOOL\f[R] must be \f[B]pygments\f[R] (or abbreviations \f[B]p\f[R],
+\f[B]pyg\f[R]) or \f[B]skylighting\f[R] (or abbreviations \f[B]s\f[R],
+\f[B]sky\f[R]).
+Code blocks are sent to the external tool with their language specifier
+(if present) or with auto\-detection enabled.
+The highlighted HTML output replaces the original code block in the
+document.
+.TP
+\f[B]\(encode\-line\-numbers\f[R]
+Include line numbers in syntax\-highlighted code blocks.
+Requires \f[B]\(encode\-highlight\f[R].
+When used with Pygments, adds \f[CR]linenos=1\f[R] option.
+When used with Skylighting, adds \f[CR]\-n\f[R] flag.
+.TP
+\f[B]\(enhighlight\-language\-only\f[R]
+Only apply syntax highlighting to code blocks that have a language
+specified (via \f[CR]\(ga\(ga\(galanguage\f[R] or IAL).
+Code blocks without a language will be left unhighlighted.
+Requires \f[B]\(encode\-highlight\f[R].
+.TP
+\f[B]\(enincludes\f[R], \f[B]\(enno\-includes\f[R]
+Enable or disable file inclusion.
+Enabled by default in unified mode.
+.PP
+\f[B]\(entransforms\f[R], \f[B]\(enno\-transforms\f[R] :: Enable or
+disable metadata variable transforms (\f[CR][%key:transform]\f[R]).
+When enabled, metadata values can be transformed (case conversion,
+string manipulation, regex replacement, date formatting, etc.)
+when inserted into the document.
+Enabled by default in unified mode.
+.TP
+\f[B]\(enmeta\-file\f[R] \f[I]FILE\f[R]
+Load metadata from an external file.
+Auto\-detects format: YAML (starts with \f[CR]\-\-\-\f[R]),
+MultiMarkdown (key: value pairs), or Pandoc (starts with \f[CR]%\f[R]).
+Metadata from the file is merged with document metadata, with document
+metadata taking precedence.
+Metadata can also control command\-line options (see METADATA CONTROL OF
+OPTIONS below).
+If no \f[CR]\-\-meta\-file\f[R] is provided, Apex will automatically
+load \f[CR]$XDG_CONFIG_HOME/apex/config.yml\f[R] (or
+\f[CR]\(ti/.config/apex/config.yml\f[R] when \f[CR]XDG_CONFIG_HOME\f[R]
+is not set) if it exists, as if it were passed via
+\f[CR]\-\-meta\-file\f[R].
+.TP
+\f[B]\(enmeta\f[R] \f[I]KEY=VALUE\f[R]
+Set a metadata key\-value pair.
+Can be used multiple times.
+Supports comma\-separated pairs (e.g.,
+\f[CR]\-\-meta KEY1=value1,KEY2=value2\f[R]).
+Values can be quoted to include spaces and special characters.
+Command\-line metadata takes precedence over both file and document
+metadata.
+Metadata can also control command\-line options (see METADATA CONTROL OF
+OPTIONS below).
+.TP
+\f[B]\(enhardbreaks\f[R]
+Treat newlines as hard breaks.
+.TP
+\f[B]\(enwidont\f[R]
+Prevent short widows in headings by inserting non\-breaking spaces
+(\f[CR]&nbsp;\f[R]) between trailing words when their combined length is
+10 characters or less.
+Applies to h1\-h6 headings.
+.TP
+\f[B]\(encode\-is\-poetry\f[R]
+Treat code blocks without a language as poetry by adding the
+\f[CR]poetry\f[R] class.
+Automatically enables \f[B]\(enhighlight\-language\-only\f[R].
+.TP
+\f[B]\(enmarkdown\-in\-html\f[R], \f[B]\(enno\-markdown\-in\-html\f[R]
+Enable or disable markdown processing inside HTML blocks with
+\f[CR]markdown\f[R] attributes.
+Enabled by default in unified mode.
+.TP
+\f[B]\(enrandom\-footnote\-ids\f[R]
+Use hash\-based footnote IDs (e.g., \f[CR]fn\-a7b3c9d2\-1\f[R]) instead
+of sequential IDs to avoid collisions when combining multiple documents.
+.TP
+\f[B]\(enhashtags\f[R]
+Convert \f[CR]#tags\f[R] into span\-wrapped hashtags with the
+\f[CR]mkhashtag\f[R] class.
+.TP
+\f[B]\(enstyle\-hashtags\f[R]
+Use the \f[CR]mkstyledtag\f[R] class instead of \f[CR]mkhashtag\f[R] for
+hashtags.
+Requires \f[B]\(enhashtags\f[R].
+.TP
+\f[B]\(enproofreader\f[R]
+Treat \f[CR]==highlight==\f[R] and \f[CR]\(ti\(tidelete\(ti\(ti\f[R] as
+CriticMarkup highlight and deletion syntax.
+Automatically enables CriticMarkup processing.
+.TP
+\f[B]\(enhr\-page\-break\f[R]
+Replace \f[CR]<hr>\f[R] elements with Marked\-style page break divs.
+.TP
+\f[B]\(entitle\-from\-h1\f[R]
+Use the first H1 heading as the document title when no title is
+specified via \f[B]\(entitle\f[R] or metadata.
+Requires \f[B]\(enstandalone\f[R].
+.TP
+\f[B]\(enpage\-break\-before\-footnotes\f[R]
+Insert a page break before the footnotes section.
+.TP
+\f[B]\(enno\-footnotes\f[R]
+Disable footnote support.
+.TP
+\f[B]\(enno\-math\f[R]
+Disable math support.
+.TP
+\f[B]\(enno\-smart\f[R]
+Disable smart typography.
+.TP
+\f[B]\(enno\-tables\f[R]
+Disable table support.
+.TP
+\f[B]\(enno\-ids\f[R]
+Disable automatic header ID generation.
+.TP
+\f[B]\(enheader\-anchors\f[R]
+Generate \f[CR]<a>\f[R] anchor tags instead of header IDs.
+.TP
+\f[B]\(enwikilinks\f[R], \f[B]\(enno\-wikilinks\f[R]
+Enable wiki link syntax \f[CR][[PageName]]\f[R].
+Default: disabled.
+.SS Header ID Format
+.TP
+\f[B]\(enid\-format\f[R] \f[I]FORMAT\f[R]
+Header ID format: \f[B]gfm\f[R] (default), \f[B]mmd\f[R], or
+\f[B]kramdown\f[R].
+Modes auto\-set format; use this to override in unified mode.
+.SS List Options
+.TP
+\f[B]\(enalpha\-lists\f[R], \f[B]\(enno\-alpha\-lists\f[R]
+Support alpha list markers (a., b., c.\ and A., B., C.).
+.TP
+\f[B]\(enmixed\-lists\f[R], \f[B]\(enno\-mixed\-lists\f[R]
+Allow mixed list markers at same level (inherit type from first item).
+.SS Table Options
+.TP
+\f[B]\(enrelaxed\-tables\f[R], \f[B]\(enno\-relaxed\-tables\f[R]
+Enable relaxed table parsing (no separator rows required).
+.TP
+\f[B]\(enper\-cell\-alignment\f[R], \f[B]\(enno\-per\-cell\-alignment\f[R]
+Enable per\-cell alignment markers in tables.
+When enabled, cells starting with a colon (\f[CR]:\f[R]) are
+left\-aligned, ending with a colon (\f[CR]:\f[R]) are right\-aligned, or
+both (\f[CR]:content:\f[R]) are center\-aligned.
+The colons are stripped from the output and replaced with
+\f[CR]style=\(dqtext\-align: ...\(dq\f[R] attributes.
+Default: enabled in unified mode, disabled in commonmark, gfm, mmd, and
+kramdown modes.
+.TP
+\f[B]\(encaptions\f[R] \f[I]POSITION\f[R]
+Table caption position: \f[B]above\f[R] or \f[B]below\f[R] (default:
+\f[B]below\f[R]).
+Controls where table captions appear relative to the table.
+.SS HTML and Links
+.TP
+\f[B]\(enunsafe\f[R], \f[B]\(enno\-unsafe\f[R]
+Allow raw HTML in output.
+Default: true for unified/mmd/kramdown modes, false for commonmark/gfm
+modes.
+.TP
+\f[B]\(enautolink\f[R], \f[B]\(enno\-autolink\f[R]
+Enable autolinking of URLs and email addresses.
+Default: enabled in GFM, MultiMarkdown, Kramdown, and unified modes;
+disabled in CommonMark mode.
+.TP
+\f[B]\(enobfuscate\-emails\f[R]
+Obfuscate email links and text using HTML entities (hex\-encoded).
+.PP
+\f[B]\(enwikilink\-space\f[R] \f[I]MODE\f[R] :: Control how spaces in
+wiki link page names are handled in the generated URL.
+\f[B]MODE\f[R] must be one of:
+.PP
+\f[CR]dash\f[R] \- Convert spaces to dashes: \f[CR][[Home Page]]\f[R] →
+\f[CR]href=\(dqHome\-Page\(dq\f[R]
+.PP
+\f[CR]none\f[R] \- Remove spaces: \f[CR][[Home Page]]\f[R] →
+\f[CR]href=\(dqHomePage\(dq\f[R]
+.PP
+\f[CR]underscore\f[R] \- Convert spaces to underscores:
+\f[CR][[Home Page]]\f[R] → \f[CR]href=\(dqHome_Page\(dq\f[R]
+.PP
+\f[CR]space\f[R] \- Keep spaces (rendered as \f[CR]%%20\f[R] in HTML):
+\f[CR][[Home Page]]\f[R] → \f[CR]href=\(dqHome%20Page\(dq\f[R]
+.IP
+.EX
+Default: \(gadash\(ga.
+.EE
+.PP
+\f[B]\(enwikilink\-extension\f[R] \f[I]EXT\f[R] :: Add a file extension
+to wiki link URLs.
+The extension is automatically prefixed with a dot if not provided.
+For example, \f[CR]\-\-wikilink\-extension html\f[R] creates
+\f[CR]href=\(dqPage.html\(dq\f[R] and
+\f[CR]\-\-wikilink\-extension .html\f[R] also creates
+\f[CR]href=\(dqPage.html\(dq\f[R].
+.TP
+\f[B]\(enwikilink\-sanitize\f[R], \f[B]\(enno\-wikilink\-sanitize\f[R]
+Sanitize wiki link URLs for cleaner, more compatible links.
+When enabled:
+.IP \(bu 2
+Removes apostrophes and quotation marks (i.e.\ removes
+\f[CR]\(dq\(aq\(rs\f[R]´\(oq\(cq\(lq\(rq\(ga)
+.IP \(bu 2
+Converts select latin\-1 characters to ASCII (e.g.\ e\-acute \-> e)
+.IP \(bu 2
+Converts uppercase to lowercase
+.IP \(bu 2
+Replaces non\-ascii and any non\-alphanumeric ascii characters with the
+space\-mode character (except \f[CR]/\f[R] and \f[CR].\f[R])
+.IP \(bu 2
+Removes duplicate space\-mode characters
+.IP \(bu 2
+Removes leading and trailing space\-mode characters
+.PP
+For example, with
+\f[CR]\-\-wikilink\-sanitize \-\-wikilink\-space dash\f[R]:
+.PP
+\f[CR][[O\(aqBrien\(aqs Page]]\f[R] →
+\f[CR]href=\(dqobriens\-page\(dq\f[R]
+.PP
+\f[CR][[Hello   World!!!]]\f[R] → \f[CR]href=\(dqhello\-world\(dq\f[R]
+.PP
+\f[CR][[path/to/FILE.MD]]\f[R] → \f[CR]href=\(dqpath/to/file.md\(dq\f[R]
+.PP
+Default: disabled.
+.SS Image Embedding
+.TP
+\f[B]\(enembed\-images\f[R]
+Embed local images as base64 data URLs in HTML output.
+Only local images (file paths) are embedded; remote images (http://,
+https://) are not processed.
+Images are read from the filesystem and encoded as base64 data URLs
+(e.g., \f[CR]data:image/png;base64,...\f[R]).
+Relative paths are resolved using the base directory (see
+\f[B]\(enbase\-dir\f[R]).
+.TP
+\f[B]\(enimage\-captions\f[R], \f[B]\(enno\-image\-captions\f[R]
+Wrap images with title or alt text in \f[CR]<figure>\f[R] elements with
+\f[CR]<figcaption>\f[R].
+Default: enabled in unified and MultiMarkdown modes; disabled in
+commonmark, gfm, and kramdown modes.
+.TP
+\f[B]\(enemoji\-autocorrect\f[R], \f[B]\(enno\-emoji\-autocorrect\f[R]
+Convert emoji names (e.g., \f[CR]:rocket:\f[R]) to Unicode emoji
+characters.
+Default: enabled in unified mode; disabled in other modes.
+.SS Path Resolution
+.TP
+\f[B]\(enbase\-dir\f[R] \f[I]DIR\f[R]
+Base directory for resolving relative paths.
+Used for:
+.RS
+.IP \(bu 2
+Image embedding (with \f[B]\(enembed\-images\f[R])
+.IP \(bu 2
+File includes/transclusions
+.IP \(bu 2
+Relative path resolution when reading from stdin or
+.RS 2
+.PP
+when the working directory differs from the document location
+.RE
+.RE
+.PP
+If not specified and reading from a file, the base directory is
+automatically set to the input file\(cqs directory.
+When reading from stdin, this flag must be used to resolve relative
+paths.
+.SS Superscript/Subscript
+.TP
+\f[B]\(ensup\-sub\f[R], \f[B]\(enno\-sup\-sub\f[R]
+Enable MultiMarkdown\-style superscript and subscript syntax.
+The \f[CR]\(ha\f[R] character creates superscript for the text
+immediately following it (stops at space or punctuation).
+The \f[CR]\(ti\f[R] character creates subscript when used within a
+word/identifier (e.g., \f[CR]H\(ti2\(tiO\f[R] creates H₂O).
+When tildes are at word boundaries (e.g., \f[CR]\(titext\(ti\f[R]), they
+create underline instead.
+Default: enabled in unified and MultiMarkdown modes.
+.TP
+\f[B]\(enstrikethrough\f[R], \f[B]\(enno\-strikethrough\f[R]
+Enable or disable GFM\-style strikethrough processing
+(\f[CR]\(ti\(titext\(ti\(ti\f[R]).
+When enabled, \f[CR]\(ti\(titext\(ti\(ti\f[R] renders as
+\f[CR]<del>text</del>\f[R].
+Default: enabled in GFM and unified modes; disabled in commonmark, mmd,
+and kramdown modes.
+.TP
+\f[B]\(endivs\f[R], \f[B]\(enno\-divs\f[R]
+Enable or disable Pandoc fenced divs syntax
+(\f[CR]::::: {#id .class} ... :::::\f[R]).
+Fenced divs allow you to create HTML block elements with attributes
+using a special fence syntax.
+By default, fenced divs create \f[CR]<div>\f[R] elements, but you can
+specify different block types using the \f[CR]>blocktype\f[R] syntax
+(e.g., \f[CR]::: >aside {.sidebar} ... :::\f[R] creates an
+\f[CR]<aside>\f[R] element instead).
+Opening fences must have at least 3 colons and attributes; closing
+fences need at least 3 colons.
+Fenced divs can be nested, including different block types.
+Default: enabled in unified mode only.
+.TP
+\f[B]\(enspans\f[R], \f[B]\(enno\-spans\f[R]
+Enable or disable Pandoc\-style bracketed spans syntax
+(\f[CR][text]{#id .class key=\(dqval\(dq}\f[R]).
+Bracketed spans allow you to create HTML \f[CR]<span>\f[R] elements with
+attributes.
+The text inside the brackets is processed as markdown.
+If the bracketed text matches a reference link definition, it will be
+treated as a link instead of a span.
+Default: enabled in unified mode only.
+.SS Citations and Bibliography
+.TP
+\f[B]\(enbibliography\f[R] \f[I]FILE\f[R]
+Bibliography file in BibTeX, CSL JSON, or CSL YAML format.
+Can be specified multiple times to load multiple bibliography files.
+Citations are automatically enabled when this option is used.
+Bibliography can also be specified in document metadata.
+.TP
+\f[B]\(encsl\f[R] \f[I]FILE\f[R]
+Citation Style Language (CSL) file for formatting citations and
+bibliography.
+Citations are automatically enabled when this option is used.
+CSL file can also be specified in document metadata.
+.TP
+\f[B]\(enno\-bibliography\f[R]
+Suppress bibliography output even when citations are present.
+.TP
+\f[B]\(enlink\-citations\f[R]
+Link citations to their corresponding bibliography entries.
+Citations will include \f[CR]href\f[R] attributes pointing to the
+bibliography entry.
+.TP
+\f[B]\(enshow\-tooltips\f[R]
+Show tooltips on citations when hovering (requires CSS support).
+.PP
+Citation syntax is supported in MultiMarkdown and unified modes:
+.IP \(bu 2
+Pandoc: \f[CR][\(atkey]\f[R], \f[CR][\(atkey1; \(atkey2]\f[R],
+\f[CR]\(atkey\f[R]
+.IP \(bu 2
+MultiMarkdown: \f[CR][#key]\f[R]
+.IP \(bu 2
+mmark: \f[CR][\(atRFC1234]\f[R]
+.PP
+Bibliography is inserted at the \f[CR]<!\-\- REFERENCES \-\->\f[R]
+marker or appended to the end of the document if no marker is found.
+.SS Indices
+.TP
+\f[B]\(enindices\f[R]
+Enable index processing.
+Supports both mmark and TextIndex syntax.
+Default: enabled in MultiMarkdown and unified modes.
+.TP
+\f[B]\(enno\-indices\f[R]
+Disable index processing.
+.TP
+\f[B]\(enno\-index\f[R]
+Suppress index generation at the end of the document.
+Index markers are still created in the document, but the index section
+is not generated.
+.PP
+Index syntax is supported in MultiMarkdown and unified modes:
+.IP \(bu 2
+\f[B]mmark syntax\f[R]: \f[CR](!item)\f[R], \f[CR](!item, subitem)\f[R],
+\(ga(!!item,
+.RS 2
+.PP
+subitem)\(ga for primary entries
+.RE
+.IP \(bu 2
+\f[B]TextIndex syntax\f[R]: \f[CR]word{\(ha}\f[R],
+\f[CR][term]{\(ha}\f[R], \f[CR]{\(haparams}\f[R]
+.PP
+The index is automatically generated at the end of the document or at
+the \f[CR]<!\-\-INDEX\-\->\f[R] marker if present.
+Entries are sorted alphabetically and can be grouped by first letter.
+.SS Plugins
+.TP
+\f[B]\(enplugins\f[R], \f[B]\(enno\-plugins\f[R]
+Enable or disable external/plugin processing.
+Plugins extend Apex with custom processing capabilities.
+.TP
+\f[B]\(enlist\-plugins\f[R]
+List installed plugins and available plugins from the remote directory.
+Shows both locally installed plugins and plugins available for
+installation from the Apex plugin directory.
+.TP
+\f[B]\(eninstall\-plugin\f[R] \f[I]ID\f[R]
+Install a plugin by ID from the remote directory, or by Git URL/GitHub
+shorthand (user/repo).
+Plugins are installed to \f[CR]$XDG_CONFIG_HOME/apex/plugins\f[R] (or
+\f[CR]\(ti/.config/apex/plugins\f[R] when \f[CR]XDG_CONFIG_HOME\f[R] is
+not set).
+When installing from a URL or GitHub shorthand, Apex will prompt for
+confirmation since plugins execute unverified code.
+.TP
+\f[B]\(enuninstall\-plugin\f[R] \f[I]ID\f[R]
+Uninstall a plugin by ID.
+Removes the plugin directory from the plugins folder.
+Apex will prompt for confirmation before removing the plugin.
+.SS General Options
+.TP
+\f[B]\-h\f[R], \f[B]\(enhelp\f[R]
+Show help message and exit.
+.TP
+\f[B]\-v\f[R], \f[B]\(enversion\f[R]
+Show version information and exit.
+.TP
+\f[B]\(enprogress\f[R], \f[B]\(enno\-progress\f[R]
+Show progress indicator during processing.
+Default: enabled when stderr is a TTY.
+.SS Multi\-file Utilities
+.TP
+\f[B]\(encombine\f[R] \f[I]files\&...\f[R]
+Concatenate one or more Markdown files into a single Markdown stream,
+expanding all supported include syntaxes.
+When a \f[CR]SUMMARY.md\f[R] file is provided, Apex treats it as a
+GitBook\-style index and combines the linked files in order.
+Output is raw Markdown suitable for piping back into Apex.
+.TP
+\f[B]\(enmmd\-merge\f[R] \f[I]index files\&...\f[R]
+Merge files from one or more MultiMarkdown \f[CR]mmd_merge\f[R]\-style
+index files into a single Markdown stream.
+Each non\-empty, non\-comment line in an index file specifies a document
+to include.
+Lines whose first non\-whitespace character is \f[CR]#\f[R] are treated
+as comments and ignored.
+Indentation (tabs or groups of four spaces) before the filename
+increases the header level of the included document (each indent level
+shifts all Markdown headings in that file down one level).
+Output is raw Markdown suitable for piping into Apex, for example:
+.PP
+apex \(enmmd\-merge index.txt | apex \(enmode mmd \(enstandalone \-o
+book.html
+.SH EXAMPLES
+Process a markdown file:
+.IP
+.EX
+apex input.md
+.EE
+.PP
+Output to a file:
+.IP
+.EX
+apex input.md \-o output.html
+.EE
+.PP
+Generate standalone HTML document:
+.IP
+.EX
+apex input.md \-\-standalone \-\-title \(dqMy Document\(dq
+.EE
+.PP
+Pretty\-print HTML output:
+.IP
+.EX
+apex input.md \-\-pretty
+.EE
+.PP
+Use GFM mode:
+.IP
+.EX
+apex input.md \-\-mode gfm
+.EE
+.PP
+Process document with citations and bibliography:
+.IP
+.EX
+apex document.md \-\-bibliography refs.bib
+.EE
+.PP
+Use metadata to specify bibliography:
+.IP
+.EX
+apex document.md
+.EE
+.PP
+(With bibliography specified in YAML front matter)
+.PP
+Use Kramdown mode with relaxed tables:
+.IP
+.EX
+apex input.md \-\-mode kramdown
+.EE
+.PP
+Process from stdin:
+.IP
+.EX
+echo \(dq# Hello\(dq | apex
+.EE
+.SH PROCESSING MODES
+.TP
+\f[B]commonmark\f[R]
+Pure CommonMark specification.
+Minimal features, maximum compatibility.
+.TP
+\f[B]gfm\f[R]
+GitHub Flavored Markdown.
+Includes tables, strikethrough, task lists, autolinks, and more.
+.TP
+\f[B]mmd\f[R], \f[B]multimarkdown\f[R]
+MultiMarkdown compatibility.
+Includes metadata, definition lists, footnotes, and more.
+.TP
+\f[B]kramdown\f[R]
+Kramdown compatibility.
+Includes relaxed tables, IAL (Inline Attribute Lists) for adding HTML
+attributes to elements, and more.
+.TP
+\f[B]unified\f[R] (default)
+All features enabled.
+Combines features from all modes.
+.SH METADATA CONTROL OF OPTIONS
+Most command\-line options can be controlled via document metadata,
+allowing different files to be processed with different settings when
+processing batches.
+This enables per\-document configuration without needing separate
+command\-line invocations.
+.PP
+\f[B]Boolean options\f[R] accept \f[CR]true\f[R]/\f[CR]false\f[R],
+\f[CR]yes\f[R]/\f[CR]no\f[R], or \f[CR]1\f[R]/\f[CR]0\f[R]
+(case\-insensitive).
+\f[B]String options\f[R] use the value directly.
+.PP
+\f[B]Supported boolean options:\f[R] \f[CR]indices\f[R],
+\f[CR]wikilinks\f[R], \f[CR]wikilink\-sanitize\f[R],
+\f[CR]includes\f[R], \f[CR]relaxed\-tables\f[R],
+\f[CR]per\-cell\-alignment\f[R], \f[CR]alpha\-lists\f[R],
+\f[CR]mixed\-lists\f[R], \f[CR]sup\-sub\f[R], \f[CR]strikethrough\f[R],
+\f[CR]autolink\f[R], \f[CR]transforms\f[R], \f[CR]unsafe\f[R],
+\f[CR]tables\f[R], \f[CR]footnotes\f[R], \f[CR]smart\f[R],
+\f[CR]math\f[R], \f[CR]ids\f[R], \f[CR]header\-anchors\f[R],
+\f[CR]embed\-images\f[R], \f[CR]image\-captions\f[R],
+\f[CR]link\-citations\f[R], \f[CR]show\-tooltips\f[R],
+\f[CR]suppress\-bibliography\f[R], \f[CR]suppress\-index\f[R],
+\f[CR]group\-index\-by\-letter\f[R], \f[CR]obfuscate\-emails\f[R],
+\f[CR]pretty\f[R], \f[CR]standalone\f[R], \f[CR]hardbreaks\f[R],
+\f[CR]plugins\f[R], \f[CR]emoji\-autocorrect\f[R],
+\f[CR]code\-line\-numbers\f[R], \f[CR]highlight\-language\-only\f[R],
+\f[CR]markdown\-in\-html\f[R]
+.PP
+\f[B]Supported string options:\f[R] \f[CR]bibliography\f[R],
+\f[CR]csl\f[R], \f[CR]title\f[R], \f[CR]style\f[R] (or \f[CR]css\f[R]),
+\f[CR]id\-format\f[R], \f[CR]base\-dir\f[R], \f[CR]mode\f[R],
+\f[CR]wikilink\-space\f[R], \f[CR]wikilink\-extension\f[R]
+.PP
+\f[B]Example YAML front matter:\f[R]
+.IP
+.EX
+\-\-\-
+indices: false
+wikilinks: true
+bibliography: references.bib
+title: My Research Paper
+pretty: true
+standalone: true
+\-\-\-
+.EE
+.PP
+\f[B]Example MultiMarkdown metadata:\f[R]
+.IP
+.EX
+indices: false
+wikilinks: true
+bibliography: references.bib
+title: My Research Paper
+.EE
+.PP
+When processing multiple files with \f[CR]apex *.md\f[R], each file can
+use its own configuration via metadata.
+You can also use \f[CR]\-\-meta\-file\f[R] to specify a shared
+configuration file that applies to all processed files.
+.PP
+\f[B]Note:\f[R] If \f[CR]mode\f[R] is specified in metadata, it resets
+all options to that mode\(cqs defaults before applying other metadata
+options.
+.SH FEATURES
+Apex supports a wide range of Markdown extensions:
+.IP \(bu 2
+\f[B]Tables\f[R]: GFM\-style tables with alignment
+.IP \(bu 2
+\f[B]Strikethrough\f[R]: GFM\-style \f[CR]\(ti\(titext\(ti\(ti\f[R]
+(controlled by \f[B]\(enstrikethrough\f[R])
+.IP \(bu 2
+\f[B]Footnotes\f[R]: Reference\-style footnotes
+.IP \(bu 2
+\f[B]Math\f[R]: Inline (\f[CR]$...$\f[R]) and display
+(\f[CR]$$...$$\f[R]) math
+.RS 2
+.PP
+with LaTeX
+.RE
+.IP \(bu 2
+\f[B]Wiki Links\f[R]: \f[CR][[Page]]\f[R], \f[CR][[Page|Display]]\f[R],
+.RS 2
+.PP
+\f[CR][[Page#Section]]\f[R]
+.RE
+.IP \(bu 2
+\f[B]Critic Markup\f[R]: All 5 types ({++add++}, {\(endel\(en},
+.RS 2
+.PP
+{[STRIKEOUT:sub]}, {==mark==}, {>>comment<<})
+.RE
+.IP \(bu 2
+\f[B]Smart Typography\f[R]: Smart quotes, dashes, ellipsis
+.IP \(bu 2
+\f[B]Definition Lists\f[R]: MultiMarkdown\-style definition lists
+.IP \(bu 2
+\f[B]Task Lists\f[R]: GFM\-style task lists
+.IP \(bu 2
+\f[B]Metadata\f[R]: YAML front matter, MultiMarkdown metadata,
+.RS 2
+.PP
+Pandoc title blocks
+.RE
+.IP \(bu 2
+\f[B]Metadata Transforms\f[R]: Transform metadata values with
+.RS 2
+.PP
+\f[CR][%key:transform]\f[R] syntax (case conversion, string
+manipulation, regex replacement, date formatting, etc.)
+.RE
+.IP \(bu 2
+\f[B]Metadata Control of Options\f[R]: Control command\-line
+.RS 2
+.PP
+options via metadata for per\-document configuration
+.RE
+.IP \(bu 2
+\f[B]Header IDs\f[R]: Automatic or manual header IDs with
+.RS 2
+.PP
+multiple format options
+.RE
+.IP \(bu 2
+\f[B]Relaxed Tables\f[R]: Support for tables without separator rows
+(Kramdown\-style).
+Enabled by default in unified and Kramdown modes.
+.IP \(bu 2
+\f[B]Per\-Cell Alignment\f[R]: Support for alignment markers using
+colons at the start and/or end of table cells.
+Enabled by default in unified mode only.
+.RS 2
+.PP
+rows (Kramdown\-style)
+.RE
+.IP \(bu 2
+\f[B]Inline Tables from CSV/TSV\f[R]: Convert inline CSV/TSV
+.RS 2
+.PP
+text to tables using \(ga\(ga\f[CR]table fences or\f[R]\(ga markers
+.RE
+.PP
+\f[B]Superscript/Subscript\f[R]: MultiMarkdown\-style superscript
+(\f[CR]\(hatext\f[R]) and subscript (\f[CR]\(titext\(ti\f[R] within
+words) syntax.
+Subscript uses paired tildes within word boundaries (e.g.,
+\f[CR]H\(ti2\(tiO\f[R]), while tildes at word boundaries create
+underline
+.IP \(bu 2
+\f[B]Image Embedding\f[R]: Embed local images as base64 data
+.RS 2
+.PP
+URLs with \f[CR]\-\-embed\-images\f[R] flag
+.RE
+.PP
+\f[B]Inline Attribute Lists (IAL)\f[R]: Kramdown\-style syntax for
+adding HTML attributes (IDs, classes, key\-value pairs) to block\-level
+and inline elements.
+Supports Attribute List Definitions (ALDs) for reusable attribute sets.
+Available in kramdown and unified modes.
+See \c
+.UR https://github.com/ttscoff/apex/wiki/Inline-Attribute-Lists
+Inline Attribute Lists
+.UE \c
+\ for complete documentation
+.SH SEE ALSO
+\f[B]apex\-config\f[R](5), \f[B]apex\-plugins\f[R](7),
+\f[B]pandoc\f[R](1), \f[B]markdown\f[R](7)
+.PP
+For complete documentation, see the \c
+.UR https://github.com/ttscoff/apex/wiki
+Apex Wiki
+.UE \c
+\&.
+.PP
+Project homepage: \c
+.UR https://github.com/ApexMarkdown/apex
+.UE \c
+.SH AUTHOR
+Brett Terpstra
+.SH COPYRIGHT
+Copyright (c) 2025 Brett Terpstra.
+Licensed under MIT License.
+.SH BUGS
+Report bugs at \c
+.UR https://github.com/ttscoff/apex/issues
+.UE \c
+\&.
+.SH AUTHORS
+Brett Terpstra.