anncrsnp 0.1.2 → 0.1.3

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data/README.md

@@ -7,6 +7,47 @@ The user can mine the local database, searching information about SNPs that over
 If you use this tool, please cite us: Rojano E, Ranea JA, Perkins JR. Characterisation of non-coding genetic variation in histamine receptors using AnNCR-SNP. Amino Acids. 2016 Jun 6. DOI: 10.1007/s00726-016-2265-5.
 
 ## Installation
+### Linux (Ubuntu) & Mac
+
+If you have no Ruby installed, we recommend you to install Ruby using RVM:
+
+     $ gpg2 --keyserver hkp://keys.gnupg.net --recv-keys 409B6B1796C275462A1703113804BB82D39DC0E3
+
+If this command doesn't work, try:
+
+    $ command curl -sSL https://rvm.io/mpapis.asc | gpg2 --import -
+
+Then type:
+
+    $ \curl -sSL https://get.rvm.io | bash -s stable
+    $ source /home/user/.profile
+
+Check that the file ~/.bashrc contains this line at the end, if not ruby won't be recognized:
+[[ -s "$HOME/.rvm/scripts/rvm" ]] && source "$HOME/.rvm/scripts/rvm" # Load RVM into a shell session *as a function*
+
+Then execute:
+    
+     $ rvm install 2.1.1
+
+At this point, you can install the ruby gem:
+
+     $ gem install anncrsnp
+
+For further RVM installation, please visit https://rvm.io/
+
+### Windows
+
+If you have no Ruby installed, we recommend you to install Ruby using RubyInstaller (http://rubyinstaller.org/downloads/). Check before your Windows version. 
+
+During the installation, you have to mark all available options before continuing (Install Td/Tk support, Add Ruby executables to your PATH, Associate .rb and .rbw files with this Ruby installation).
+
+Then, install the package directly as:
+
+    $ gem install anncrsnp
+
+For further RubyInstaller information, please visit http://rubyinstaller.org/
+
+
 
 Install the package directly as:
 
@@ -20,7 +61,7 @@ The user can query the local database using a list of SNPs or genomic coordinate
 
 An example of use can be the following:
 
-    $ grdbfinder.rb –n rs2470893,rs12049351 -g snpDbSnp -F 200 -o output_file -f txt
+    $ grdbfinder.rb -n rs2470893,rs12049351 -g snpDbSnp -F 200 -o output_file -f txt
 
 Where:
 

data/lib/anncrsnp/version.rb

@@ -1,3 +1,3 @@
 module Anncrsnp
-  VERSION = "0.1.2"
+  VERSION = "0.1.3"
 end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: anncrsnp
 version: !ruby/object:Gem::Version
-  version: 0.1.2
+  version: 0.1.3
 platform: ruby
 authors:
 - Elena Rojano
@@ -117,7 +117,6 @@ files:
 - bin/masterfeatures.rb
 - bin/setup
 - bin/statistics.rb
-- database/deleteme
 - lib/anncrsnp.rb
 - lib/anncrsnp/dataset.rb
 - lib/anncrsnp/parsers/ucscparser.rb