anncrsnp 0.1.2 → 0.1.3
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- checksums.yaml +4 -4
- data/README.md +42 -1
- data/lib/anncrsnp/version.rb +1 -1
- metadata +1 -2
- data/database/deleteme +0 -0
checksums.yaml
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SHA1:
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metadata.gz:
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data.tar.gz:
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metadata.gz: ddb348f3aa472df429ca3e2f2db94ee82230bb9d
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data.tar.gz: 6372089b9eb4bd7892aa7a4af23a06530c87a8ce
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: eead26436f1943add592c34d7a96b8692e859a5b9a293663c7d91ed3ed8e7e79ac2d993e0063d7c57289dc7d48766dd01e5faec447ecec13e51d67d345a91b59
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data.tar.gz: d27329b3f4ed3762b365ef87e19a46f0808fb0543c527c6a45d4daf37ce1b8333285789cead68a5523dbadaa02d5c91e6e1d544cf831cc129a74d9dd3690aa25
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data/README.md
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@@ -7,6 +7,47 @@ The user can mine the local database, searching information about SNPs that over
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If you use this tool, please cite us: Rojano E, Ranea JA, Perkins JR. Characterisation of non-coding genetic variation in histamine receptors using AnNCR-SNP. Amino Acids. 2016 Jun 6. DOI: 10.1007/s00726-016-2265-5.
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## Installation
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### Linux (Ubuntu) & Mac
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If you have no Ruby installed, we recommend you to install Ruby using RVM:
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$ gpg2 --keyserver hkp://keys.gnupg.net --recv-keys 409B6B1796C275462A1703113804BB82D39DC0E3
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If this command doesn't work, try:
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$ command curl -sSL https://rvm.io/mpapis.asc | gpg2 --import -
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Then type:
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$ \curl -sSL https://get.rvm.io | bash -s stable
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$ source /home/user/.profile
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Check that the file ~/.bashrc contains this line at the end, if not ruby won't be recognized:
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[[ -s "$HOME/.rvm/scripts/rvm" ]] && source "$HOME/.rvm/scripts/rvm" # Load RVM into a shell session *as a function*
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Then execute:
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$ rvm install 2.1.1
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At this point, you can install the ruby gem:
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$ gem install anncrsnp
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For further RVM installation, please visit https://rvm.io/
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### Windows
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If you have no Ruby installed, we recommend you to install Ruby using RubyInstaller (http://rubyinstaller.org/downloads/). Check before your Windows version.
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During the installation, you have to mark all available options before continuing (Install Td/Tk support, Add Ruby executables to your PATH, Associate .rb and .rbw files with this Ruby installation).
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Then, install the package directly as:
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$ gem install anncrsnp
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For further RubyInstaller information, please visit http://rubyinstaller.org/
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Install the package directly as:
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@@ -20,7 +61,7 @@ The user can query the local database using a list of SNPs or genomic coordinate
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An example of use can be the following:
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$ grdbfinder.rb
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$ grdbfinder.rb -n rs2470893,rs12049351 -g snpDbSnp -F 200 -o output_file -f txt
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Where:
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data/lib/anncrsnp/version.rb
CHANGED
metadata
CHANGED
@@ -1,7 +1,7 @@
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--- !ruby/object:Gem::Specification
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name: anncrsnp
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version: !ruby/object:Gem::Version
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version: 0.1.
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version: 0.1.3
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platform: ruby
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authors:
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- Elena Rojano
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@@ -117,7 +117,6 @@ files:
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- bin/masterfeatures.rb
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- bin/setup
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- bin/statistics.rb
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-
- database/deleteme
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- lib/anncrsnp.rb
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- lib/anncrsnp/dataset.rb
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- lib/anncrsnp/parsers/ucscparser.rb
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data/database/deleteme
DELETED
File without changes
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