andersjacobsen-mirmaid_mir2disease 0.0.0 → 0.1.0

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Files changed (48) hide show
  1. data/MIT-LICENSE +20 -0
  2. data/Rakefile +46 -0
  3. data/VERSION +1 -0
  4. data/app/controllers/m2d_disease_links_controller.rb +44 -0
  5. data/app/controllers/m2d_diseases_controller.rb +44 -0
  6. data/app/models/m2d_disease.rb +22 -0
  7. data/app/models/m2d_disease_link.rb +27 -0
  8. data/app/views/m2d_disease_links/_list_for_mature.html.erb +21 -0
  9. data/app/views/m2d_disease_links/_m2d_disease_link.html.erb +9 -0
  10. data/app/views/m2d_disease_links/index.html.erb +18 -0
  11. data/app/views/m2d_disease_links/show.html.erb +21 -0
  12. data/app/views/m2d_diseases/_m2d_disease.html.erb +4 -0
  13. data/app/views/m2d_diseases/index.html.erb +20 -0
  14. data/app/views/m2d_diseases/show.html.erb +25 -0
  15. data/config/routes.rb +12 -0
  16. data/data/mir2dis.txt +2568 -0
  17. data/init.rb +7 -0
  18. data/install.rb +1 -0
  19. data/lib/mir2disease.rb +1 -0
  20. data/mirmaid_mir2disease.gemspec +87 -0
  21. data/mirmaid_models.rb +9 -0
  22. data/rdoc/classes/M2dDisease.html +140 -0
  23. data/rdoc/classes/M2dDiseaseLink.html +119 -0
  24. data/rdoc/classes/M2dDiseaseLinksController.html +170 -0
  25. data/rdoc/classes/M2dDiseasesController.html +170 -0
  26. data/rdoc/created.rid +1 -0
  27. data/rdoc/css/main.css +191 -0
  28. data/rdoc/css/panel.css +383 -0
  29. data/rdoc/css/reset.css +53 -0
  30. data/rdoc/files/README.html +78 -0
  31. data/rdoc/files/app/controllers/m2d_disease_links_controller_rb.html +66 -0
  32. data/rdoc/files/app/controllers/m2d_diseases_controller_rb.html +66 -0
  33. data/rdoc/files/app/models/m2d_disease_link_rb.html +85 -0
  34. data/rdoc/files/app/models/m2d_disease_rb.html +77 -0
  35. data/rdoc/files/lib/mir2disease_rb.html +64 -0
  36. data/rdoc/i/arrows.png +0 -0
  37. data/rdoc/i/results_bg.png +0 -0
  38. data/rdoc/i/tree_bg.png +0 -0
  39. data/rdoc/index.html +14 -0
  40. data/rdoc/js/jquery-1.3.2.min.js +19 -0
  41. data/rdoc/js/main.js +34 -0
  42. data/rdoc/js/searchdoc.js +620 -0
  43. data/rdoc/panel/index.html +71 -0
  44. data/rdoc/panel/search_index.js +1 -0
  45. data/rdoc/panel/tree.js +1 -0
  46. data/tasks/mir2disease_tasks.rake +115 -0
  47. data/uninstall.rb +1 -0
  48. metadata +51 -2
data/rdoc/css/reset.css ADDED
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+ /* http://meyerweb.com/eric/tools/css/reset/ */
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+ /* v1.0 | 20080212 */
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+
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+ html, body, div, span, applet, object, iframe,
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+ h1, h2, h3, h4, h5, h6, p, blockquote, pre,
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+ a, abbr, acronym, address, big, cite, code,
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+ del, dfn, em, font, img, ins, kbd, q, s, samp,
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+ small, strike, strong, sub, sup, tt, var,
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+ b, u, i, center,
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+ dl, dt, dd, ol, ul, li,
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+ fieldset, form, label, legend,
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+ table, caption, tbody, tfoot, thead, tr, th, td {
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+ margin: 0;
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+ padding: 0;
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+ border: 0;
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+ outline: 0;
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+ font-size: 100%;
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+ vertical-align: baseline;
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+ background: transparent;
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+ }
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+ body {
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+ line-height: 1;
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+ }
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+ ol, ul {
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+ list-style: none;
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+ }
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+ blockquote, q {
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+ quotes: none;
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+ }
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+ blockquote:before, blockquote:after,
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+ q:before, q:after {
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+ content: '';
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+ content: none;
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+ }
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+
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+ /* remember to define focus styles! */
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+ :focus {
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+ outline: 0;
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+ }
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+
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+ /* remember to highlight inserts somehow! */
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+ ins {
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+ text-decoration: none;
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+ }
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+ del {
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+ text-decoration: line-through;
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+ }
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+
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+ /* tables still need 'cellspacing="0"' in the markup */
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+ table {
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+ border-collapse: collapse;
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+ border-spacing: 0;
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+ }
data/rdoc/files/README.html ADDED
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+ <?xml version="1.0" encoding="utf-8"?>
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+ <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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+ <head>
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+ <title>README</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
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+ <link rel="stylesheet" href="../css/main.css" type="text/css" media="screen" />
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+ <script src="../js/main.js" type="text/javascript" charset="utf-8"></script>
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+ </head>
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+
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+ <body>
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+ <table border='0' cellpadding='0' cellspacing='0' width="100%" class='banner'>
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+ <tr><td>
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+ <table width="100%" border='0' cellpadding='0' cellspacing='0'><tr>
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+ <td class="file-title" colspan="2"><span class="file-title-prefix">File</span><br />README</td>
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+ <td align="right">
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+ <table border='0' cellspacing="0" cellpadding="2">
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+ <tr>
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+ <td>Path:</td>
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+ <td>README</td>
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+ </tr>
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+ <tr>
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+ <td>Modified:</td>
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+ <td>Thu Jun 18 11:49:23 +0200 2009</td>
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+ </tr>
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+ </table>
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+ </td></tr>
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+ </table>
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+ </td></tr>
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+ </table><br />
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+
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+ <div id="bodyContent">
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+ <div id="content">
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+
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+ <div class="description"><p>
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+ Mir2disease
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+ </p>
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+ <h6>=====</h6>
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+ <p>
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+ Introduction goes here.
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+ </p>
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+ <p>
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+ Example
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+ </p>
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+ <h6>=</h6>
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+ <p>
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+ Example goes here.
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+ </p>
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+ <p>
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+ Copyright &#169; 2009 [Anders Jacobsen], released under the MIT license
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+ </p>
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+ </div>
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+
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+ </div>
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+ </div>
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+ </body>
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+ </html>
data/rdoc/files/app/controllers/m2d_disease_links_controller_rb.html ADDED
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+ <?xml version="1.0" encoding="utf-8"?>
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+ <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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+ <head>
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+ <title>m2d_disease_links_controller.rb</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
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+ <link rel="stylesheet" href="../../../css/main.css" type="text/css" media="screen" />
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+ <script src="../../../js/main.js" type="text/javascript" charset="utf-8"></script>
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+ </head>
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+
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+ <body>
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+ <table border='0' cellpadding='0' cellspacing='0' width="100%" class='banner'>
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+ <tr><td>
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+ <table width="100%" border='0' cellpadding='0' cellspacing='0'><tr>
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+ <td class="file-title" colspan="2"><span class="file-title-prefix">File</span><br />m2d_disease_links_controller.rb</td>
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+ <td align="right">
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+ <table border='0' cellspacing="0" cellpadding="2">
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+ <tr>
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+ <td>Path:</td>
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+ <td>app/controllers/m2d_disease_links_controller.rb</td>
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+ </tr>
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+ <tr>
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+ <td>Modified:</td>
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+ <td>Tue Jun 30 00:00:51 +0200 2009</td>
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+ </tr>
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+ </table>
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+ </td></tr>
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+ </table>
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+ </td></tr>
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+ </table><br />
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+
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+ <div id="bodyContent">
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+ <div id="content">
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+
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+ <div class="sectiontitle">Classes and Modules</div>
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+ <ul>
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+
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+ <li><span class="type">CLASS</span> <a href="../../../classes/M2dDiseaseLinksController.html">M2dDiseaseLinksController</a></li>
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+
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+ </ul>
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+ </div>
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+ </div>
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+ </body>
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+ </html>
data/rdoc/files/app/controllers/m2d_diseases_controller_rb.html ADDED
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+ <?xml version="1.0" encoding="utf-8"?>
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+ <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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+ <head>
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+ <title>m2d_diseases_controller.rb</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
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+ <link rel="stylesheet" href="../../../css/main.css" type="text/css" media="screen" />
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+ <script src="../../../js/main.js" type="text/javascript" charset="utf-8"></script>
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+ </head>
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+
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+ <body>
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+ <table border='0' cellpadding='0' cellspacing='0' width="100%" class='banner'>
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+ <tr><td>
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+ <table width="100%" border='0' cellpadding='0' cellspacing='0'><tr>
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+ <td class="file-title" colspan="2"><span class="file-title-prefix">File</span><br />m2d_diseases_controller.rb</td>
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+ <td align="right">
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+ <table border='0' cellspacing="0" cellpadding="2">
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+ <tr>
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+ <td>Path:</td>
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+ <td>app/controllers/m2d_diseases_controller.rb</td>
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+ </tr>
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+ <tr>
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+ <td>Modified:</td>
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+ <td>Tue Jun 30 00:09:01 +0200 2009</td>
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+ </tr>
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+ </table>
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+ </td></tr>
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+ </table>
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+ </td></tr>
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+ </table><br />
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+
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+ <div id="bodyContent">
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+ <div id="content">
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+ <div class="sectiontitle">Classes and Modules</div>
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+ <ul>
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+
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+ <li><span class="type">CLASS</span> <a href="../../../classes/M2dDiseasesController.html">M2dDiseasesController</a></li>
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+
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+ </ul>
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+
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+ </div>
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+ </div>
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+ </body>
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+ </html>
data/rdoc/files/app/models/m2d_disease_link_rb.html ADDED
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+ <?xml version="1.0" encoding="utf-8"?>
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+ <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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+ <head>
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+ <title>m2d_disease_link.rb</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
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+ <link rel="stylesheet" href="../../../css/main.css" type="text/css" media="screen" />
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+ <script src="../../../js/main.js" type="text/javascript" charset="utf-8"></script>
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+ </head>
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+
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+ <body>
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+ <table border='0' cellpadding='0' cellspacing='0' width="100%" class='banner'>
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+ <tr><td>
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+ <table width="100%" border='0' cellpadding='0' cellspacing='0'><tr>
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+ <td class="file-title" colspan="2"><span class="file-title-prefix">File</span><br />m2d_disease_link.rb</td>
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+ <td align="right">
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+ <table border='0' cellspacing="0" cellpadding="2">
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+ <tr>
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+ <td>Path:</td>
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+ <td>app/models/m2d_disease_link.rb</td>
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+ </tr>
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+ <tr>
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+ <td>Modified:</td>
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+ <td>Wed Jul 01 14:02:58 +0200 2009</td>
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+ </tr>
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+ </table>
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+ </td></tr>
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+ </table>
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+ </td></tr>
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+ </table><br />
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+
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+ <div id="bodyContent">
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+ <div id="content">
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+
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+ <div class="description"><h2>Schema Information</h2>
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+ <p>
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+ Table name: m2d_disease_links
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+ </p>
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+ <pre>
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+ id :integer not null, primary key
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+ mature_id :integer
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+ m2d_disease_id :integer
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+ mirna :string(255)
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+ expression :string(255)
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+ method :string(255)
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+ description :text
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+ year :integer
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+ pmid :integer
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+ causal :string(255)
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+ genes :string(255)
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+ </pre>
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+ </div>
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+ <div class="sectiontitle">Classes and Modules</div>
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+ <ul>
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+
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+ <li><span class="type">CLASS</span> <a href="../../../classes/M2dDiseaseLink.html">M2dDiseaseLink</a></li>
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+
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+ </ul>
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+ </div>
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+ </body>
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+ </html>
data/rdoc/files/app/models/m2d_disease_rb.html ADDED
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+ <?xml version="1.0" encoding="utf-8"?>
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+ <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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+ <head>
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+ <title>m2d_disease.rb</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
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+ <link rel="stylesheet" href="../../../css/main.css" type="text/css" media="screen" />
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+ <script src="../../../js/main.js" type="text/javascript" charset="utf-8"></script>
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+ </head>
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+
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+ <body>
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+ <table border='0' cellpadding='0' cellspacing='0' width="100%" class='banner'>
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+ <tr><td>
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+ <table width="100%" border='0' cellpadding='0' cellspacing='0'><tr>
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+ <td class="file-title" colspan="2"><span class="file-title-prefix">File</span><br />m2d_disease.rb</td>
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+ <td align="right">
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+ <table border='0' cellspacing="0" cellpadding="2">
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+ <tr>
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+ <td>Path:</td>
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+ <td>app/models/m2d_disease.rb</td>
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+ </tr>
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+ <tr>
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+ <td>Modified:</td>
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+ <td>Wed Jul 01 14:02:58 +0200 2009</td>
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+ </tr>
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+ </table>
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+ </td></tr>
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+ </table>
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+ </td></tr>
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+ </table><br />
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+ <div id="bodyContent">
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+ <div id="content">
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+
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+ <div class="description"><h2>Schema Information</h2>
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+ <p>
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+ Table name: m2d_diseases
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+ </p>
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+ <pre>
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+ id :integer not null, primary key
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+ doid :integer
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+ name :string(255)
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+ </pre>
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+ </div>
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+ <div class="sectiontitle">Classes and Modules</div>
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+ <ul>
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+ <li><span class="type">CLASS</span> <a href="../../../classes/M2dDisease.html">M2dDisease</a></li>
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+
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+ </ul>
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+ </div>
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+ </body>
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+ </html>
data/rdoc/files/lib/mir2disease_rb.html ADDED
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+ <?xml version="1.0" encoding="utf-8"?>
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+ <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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+ <head>
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+ <title>mir2disease.rb</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
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+ <link rel="stylesheet" href="../../css/main.css" type="text/css" media="screen" />
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+ <script src="../../js/main.js" type="text/javascript" charset="utf-8"></script>
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+ </head>
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+
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+ <body>
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+ <table border='0' cellpadding='0' cellspacing='0' width="100%" class='banner'>
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+ <tr><td>
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+ <table width="100%" border='0' cellpadding='0' cellspacing='0'><tr>
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+ <td class="file-title" colspan="2"><span class="file-title-prefix">File</span><br />mir2disease.rb</td>
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+ <td align="right">
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+ <table border='0' cellspacing="0" cellpadding="2">
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+ <tr>
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+ <td>Path:</td>
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+ <td>lib/mir2disease.rb</td>
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+ </tr>
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+ <tr>
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+ <td>Modified:</td>
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+ <td>Mon Jun 15 11:40:36 +0200 2009</td>
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+ </tr>
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+ </table>
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+ </td></tr>
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+ </table>
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+ </td></tr>
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+ </table><br />
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+
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+ <div id="bodyContent">
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+ <div id="content">
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+
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+ <div class="description"><p>
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+ Mir2disease
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+ </p>
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+ </div>
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+ </html>