aleph_analytics 0.3.0 → 0.4.1

data/config/example/config.yml

@@ -19,6 +19,14 @@ common: &common
   # saml_issuer: <My App>
   # saml_name_identifier_format: <"urn:oasis:names:tc:SAML:2.0:nameid-format:transient">
 
+  # Convert database identifiers to lowercase
+  # If true, schema information (schema, table, column names) will be converted to lowercase
+  # in the Schema tab as well as autocomplete in the Query editor.  It is recommended to set
+  # this to true only if your Snowflake `QUOTED_IDENTIFIERS_IGNORE_CASE` account setting
+  # is true (so `SELECT * FROM "mytable"` can reference MYTABLE table even when Snowflake
+  # stores the table name in uppercase).
+  lowercase_db_identifiers: false
+
 development:
   <<: *common
   github_ref: heads/development

data/config/example/env.yml

@@ -1,2 +1,4 @@
 admin_redshift_username: admin_user
 admin_redshift_password: password
+admin_snowflake_username: admin_user
+admin_snowflake_password: password

data/config/example/snowflake.yml

@@ -0,0 +1,20 @@
+# Config for your Snowflake ODBC DSN
+# Usernames and passwords are provided using environment variables
+
+snowflake_common: &snowflake_common
+  dsn: snowflake
+  unload_target: @mydb.myschema.aleph_stage/
+  statement_timeout: 1800000
+  max_file_size: 5368709120
+
+production:
+  <<: *snowflake_common
+
+staging:
+  <<: *snowflake_common
+
+test:
+  <<: *snowflake_common
+
+development:
+  <<: *snowflake_common

data/config/initializers/01_internalize_configurations.rb

@@ -15,6 +15,8 @@ class AlephConfigIngest
 end
 
 ingest = AlephConfigIngest.new
+db_type = (ENV['ANALYTIC_DB_TYPE'] || 'redshift').downcase.freeze
+db_yml = "#{db_type}.yml".freeze
 
 # Application Configuration
 # -------------------------------------------------
@@ -31,16 +33,16 @@ unless defined? ROLE_HIERARCHY
   ROLES = ROLE_HIERARCHY.flat_map { |k, v| [k] + v }.uniq
 end
 
-# Redshift Connections
+# Redshift/Snowflake Connections
 # -------------------------------------------------
-unless defined? REDSHIFT_DB_CONFIG
-  redshift = ingest.slurp('redshift.yml')
-  raise "Invalid redshift.yml file for env = #{Rails.env.to_s}" unless redshift && redshift[Rails.env.to_s]
-  REDSHIFT_DB_CONFIG = {}
+unless defined? ANALYTIC_DB_CONFIG
+  db = ingest.slurp(db_yml)
+  raise "Invalid #{db_yml} file for env = #{Rails.env.to_s}" unless db && db[Rails.env.to_s]
+  ANALYTIC_DB_CONFIG = {}
   Role.configured_connections.each do |role|
-    REDSHIFT_DB_CONFIG[role] = redshift[Rails.env.to_s].merge(
-      'username' => ENV[Role.name_to_username_key(role)],
-      'password' => ENV[Role.name_to_password_key(role)]
+    ANALYTIC_DB_CONFIG[role] = db[Rails.env.to_s].merge(
+        'username' => ENV[Role.name_to_username_key(role)],
+        'password' => ENV[Role.name_to_password_key(role)]
     )
   end
 end

data/lib/analytic_db_connection_factory.rb

@@ -0,0 +1,12 @@
+class AnalyticDBConnectionFactory
+  DB_TYPE = (ENV['ANALYTIC_DB_TYPE'] || 'redshift').downcase.freeze
+
+  TYPES = {
+      redshift: RedshiftPG::Connection,
+      snowflake: SnowflakeDB::Connection
+  }
+
+  def self.for(config)
+    (TYPES[DB_TYPE.to_sym] || RedshiftPG::Connection).new(config)
+  end
+end

data/lib/analytic_db_connection_pool.rb

@@ -0,0 +1,8 @@
+class AnalyticDBConnectionPool < SimpleCache
+  include Singleton
+
+  def new_object(role)
+    config = ANALYTIC_DB_CONFIG[role]
+    AnalyticDBConnectionFactory.for(config)
+  end
+end

data/lib/aws_s3.rb

@@ -46,5 +46,21 @@ module AwsS3
         obj.upload_file(filepath)
       end
     end
+
+
+    def pipe_reader(s3_key)
+      bucket = Aws::S3::Resource.new(region: S3_REGION).bucket(S3_BUCKET)
+      reader, writer = IO.pipe
+      writer.instance_eval('undef :rewind')
+      writer.binmode()
+
+      t = Thread.new do
+        bucket.object(s3_key).get(response_target: writer)
+        writer.close
+      end
+
+      t.abort_on_exception = true
+      reader
+    end
   end
 end

data/lib/csv_serializer.rb

@@ -1,3 +1,5 @@
+# encoding: UTF-8
+
 require 'csv'
 
 class CsvSerializer
@@ -20,4 +22,28 @@ class CsvSerializer
       end
     end
   end
+
+  def self.load_from_s3_file(key, num_rows=nil, headers=true)
+    # load from an CSV file in s3 and returns the headers (if headers=true) and the rows in 2-D array
+    # params:
+    #   file: s3 key
+    #   num_rows: maximum number of rows to return
+    #   headers: does the csv file has a header row?
+    #
+
+    reader = AwsS3.pipe_reader(key)
+    rows = []
+    header_row = nil
+    CSV.new(reader, headers: true, return_headers: true).each_with_index do |row, n|
+      break if num_rows && n > num_rows
+
+      if headers && n == 0
+        header_row = row.fields
+      else
+        rows << row.fields
+      end
+    end
+
+    return [header_row, rows]
+  end
 end

data/lib/redshift_pg/connection.rb

@@ -20,7 +20,7 @@ module RedshiftPG
         return yield
       rescue PG::UnableToSend, PG::ConnectionBad
         pg_connection.reset
-        return yield
+        return yield   # retry once
       end
     end
 
@@ -28,6 +28,13 @@ module RedshiftPG
       @pg_connection ||= connect!
     end
 
+    def fetch_all_hash(query)
+      # execute a query and return the entire result as an array of hashes keyed by column names
+      reconnect_on_failure do
+        pg_connection.exec(query).to_a
+      end
+    end
+
     private
 
     def connect!

data/lib/role.rb

@@ -2,8 +2,8 @@ class Role
   ADMIN_ROLE = 'admin'.freeze
 
   class << self
-    USERNAME_POSTFIX = '_REDSHIFT_USERNAME'.freeze
-    PASSWORD_POSTFIX = '_REDSHIFT_PASSWORD'.freeze
+    USERNAME_POSTFIX = "_#{AnalyticDBConnectionFactory::DB_TYPE}_USERNAME".upcase.freeze
+    PASSWORD_POSTFIX = "_#{AnalyticDBConnectionFactory::DB_TYPE}_PASSWORD".upcase.freeze
 
     def name_to_username_key(name)
       "#{name.upcase}#{USERNAME_POSTFIX}"

data/lib/schemas/descriptor.rb

@@ -1,20 +1,22 @@
 module Schemas
   class Descriptor
     include RedisStore
+
+    SCHEMA_REFRESH_INTERVAL = APP_CONFIG['schema_refresh_interval'] || 1.day
+    LOWERCASE_DB_IDENTIFIERS = APP_CONFIG['lowercase_db_identifiers'] || false
+
     INFORMATION_SCHEMA_QUERY = <<-SQL
       SELECT
-        table_schema,
-        table_name,
-        column_name,
+        #{LOWERCASE_DB_IDENTIFIERS ? 'LOWER(table_schema) AS ': ''}table_schema,
+        #{LOWERCASE_DB_IDENTIFIERS ? 'LOWER(table_name) AS ': ''}table_name,
+        #{LOWERCASE_DB_IDENTIFIERS ? 'LOWER(column_name) AS ': ''}column_name,
         udt_name,
         character_maximum_length
       FROM information_schema.columns
-      WHERE table_schema NOT IN ('information_schema', 'pg_catalog', 'public')
+      WHERE table_schema NOT IN ('INFORMATION_SCHEMA', 'information_schema', 'pg_catalog', 'public')
       ORDER BY table_schema, table_name, ordinal_position;
     SQL
 
-    SCHEMA_REFRESH_INTERVAL = APP_CONFIG['schema_refresh_interval'] || 1.day
-
     def initialize(role)
       @role = role
       @cache = []
@@ -76,10 +78,8 @@ module Schemas
     end
 
     def exec_schema_query
-      connection = RedshiftConnectionPool.instance.get(@role)
-      connection.reconnect_on_failure do
-        connection.pg_connection.exec(INFORMATION_SCHEMA_QUERY)
-      end
+      connection = AnalyticDBConnectionPool.instance.get(@role)
+      connection.fetch_all_hash(INFORMATION_SCHEMA_QUERY)
     end
 
     def filter_tables(schemas)

data/lib/snowflake_db/connection.rb

@@ -0,0 +1,56 @@
+require 'odbc_utf8'
+require 'sequel'
+module SnowflakeDB
+  class Connection
+    attr_reader :config, :unload_target, :max_file_size
+
+    PG_INCLUDE_KEYS = %w(host dbname port user password)
+    MAX_FILE_SIZE = 5.gigabytes.freeze
+
+    def initialize(config)
+      @config = config
+      @statement_timeout = config['statement_timeout']
+      @unload_target = config['unload_target']
+      @max_file_size = config['max_file_size'] || MAX_FILE_SIZE
+    end
+
+    def reconnect_on_failure(&block)
+      begin
+        return yield
+      rescue Sequel::DatabaseError => e
+        raise unless connection_expired_error?(e)
+        connection.reset
+        return yield   # retry once
+      end
+    end
+
+    def connection
+      @connection ||= connect!
+    end
+
+    def fetch_all_hash(query)
+      # execute a query and return the entire result as an array of hashes keyed by column names
+      result = []
+      reconnect_on_failure do
+        connection.fetch(query) do |row|
+          result << row.stringify_keys
+        end
+      end
+      result
+    end
+
+    private
+
+    def connection_expired_error?(exception)
+      # Whether the given exception is due connection expired error.  e.g.
+      # ODBC::Error: 08001 (390114) Authentication token has expired.  The user must authenticate again.
+      exception.message =~ /\(39011[0-5]\)/
+    end
+
+    def connect!
+      Sequel.odbc(config['dsn'], user: config['username'], password: config['password']).tap do |conn|
+        conn.run("ALTER SESSION SET STATEMENT_TIMEOUT_IN_SECONDS = #{@statement_timeout}/1000") if @statement_timeout
+      end
+    end
+  end
+end

data/public/assets/{.sprockets-manifest-331daedd75cbbd8f5318863713f13576.json → .sprockets-manifest-4a69de18b234914e05f19cc97d022868.json}

@@ -1 +1 @@
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metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: aleph_analytics
 version: !ruby/object:Gem::Version
-  version: 0.3.0
+  version: 0.4.1
 platform: ruby
 authors:
 - Andrew Xue
@@ -9,7 +9,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2019-02-26 00:00:00.000000000 Z
+date: 2019-09-10 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bundler
@@ -262,7 +262,6 @@ files:
 - bin/rake
 - config.ru
 - config/application.rb
-- config/attribute-map.yml
 - config/boot.rb
 - config/database.yml
 - config/database.yml.travis
@@ -278,6 +277,7 @@ files:
 - config/example/env.yml
 - config/example/redshift.yml
 - config/example/role_hierarchy.yml
+- config/example/snowflake.yml
 - config/example/table_blacklist.yml
 - config/initializers/01_internalize_configurations.rb
 - config/initializers/action_controller_renderers.rb
@@ -311,6 +311,8 @@ files:
 - db/migrate/20190131003650_add_set_latest_result_to_queries.rb
 - db/migrate/20190205234108_add_query_scheduling_columns.rb
 - lib/aleph_log_formatter.rb
+- lib/analytic_db_connection_factory.rb
+- lib/analytic_db_connection_pool.rb
 - lib/authentication.rb
 - lib/aws_s3.rb
 - lib/clock.rb
@@ -351,6 +353,7 @@ files:
 - lib/schemas/paginate.rb
 - lib/schemas/redis_store.rb
 - lib/simple_cache.rb
+- lib/snowflake_db/connection.rb
 - lib/sql_compiler.rb
 - lib/summarizer.rb
 - lib/tasks/karma.rake
@@ -361,7 +364,7 @@ files:
 - public/422.html
 - public/500.html
 - public/aleph.png
-- public/assets/.sprockets-manifest-331daedd75cbbd8f5318863713f13576.json
+- public/assets/.sprockets-manifest-4a69de18b234914e05f19cc97d022868.json
 - public/assets/FontAwesome-9ccfa32dd4cd1b8e83f68899d85bd5e6.otf
 - public/assets/ZeroClipboard-8b5c117b88fe37e32fd34a70fdf60026.swf
 - public/assets/angular/aleph.js-4356bfc80f5b7dd3a9c9fdfacc6c8e7b.es6
@@ -622,8 +625,8 @@ required_rubygems_version: !ruby/object:Gem::Requirement
       version: '0'
 requirements: []
 rubyforge_project: 
-rubygems_version: 2.5.2.3
+rubygems_version: 2.4.5.1
 signing_key: 
 specification_version: 4
-summary: Redshift analytics platform
+summary: Redshift/Snowflake analytics platform
 test_files: []

data/config/attribute-map.yml

@@ -1,4 +0,0 @@
----
-name: name
-email: email
-data_access_role: role