ai4r 1.9 → 1.11

data/README.rdoc

@@ -20,36 +20,23 @@ http://ai4r.rubyforge.org
   
 = More Info
 
-* AI4R wiki: http://wiki.jadeferret.com/Category:AI4R  
 * AI4R Project site: http://ai4r.rubyforge.org
 
 = Contact
 
-If you have questions or constructive comments about this project, 
-please post them in the forum (http://forum.jadeferret.com/viewforum.php?f=3).
-I get an email notification when you post, and I do my best to answer as soon as possible.
-
-If you do not want to make it public, send it to me: Sergio Fierens, email address: (sergio (at) jadeferret (dot) com). But please, try to post them in the forum. I get tons of emails and it would be great to make them public to help everyone.
-
-= Roadmap
-
-AI4R is an active project. If you are interested about what we are working on, 
-checkout the development roadmap: http://wiki.jadeferret.com/AI4R_RoadMap 
+If you have questions or constructive comments about this project send it to me:
+{Sergio Fierens}[https://github.com/SergioFierens], email address: (sergio (at) gmail (dot) com).
 
 = Contributors
 
-* Thomas Kern (SOM implementation and examples)
-* Sergio Fierens
+This project was created and is maintained by {Sergio Fierens}[https://github.com/SergioFierens].
+There are other (great and absolutely cool) people who have donated time and code to make this project better, including: 
 
-= Disclaimer
+* {Thomas Kern}[https://github.com/thomaskern] 
+* {Luis Parravicini}[https://github.com/luisparravicini]
+* {Kevin Menard}[https://github.com/nirvdrum]
 
-In plain english:
-
-This project was created by Sergio Fierens, but the AI algorithms were created by other 
-people who are actually much more clever than Sergio. He does his best implementing
-them, but he cannot warranty that these implementations are accurate.
-
-In legalese:
+= Disclaimer
 
 This software is provided "as is" and without any express or implied warranties, 
 including, without limitation, the implied warranties of merchantibility and 

data/lib/ai4r.rb

@@ -23,6 +23,7 @@ require File.dirname(__FILE__) +  "/ai4r/classifiers/one_r"
 require File.dirname(__FILE__) +  "/ai4r/classifiers/zero_r"
 require File.dirname(__FILE__) +  "/ai4r/classifiers/hyperpipes"
 require File.dirname(__FILE__) +  "/ai4r/classifiers/naive_bayes"
+require File.dirname(__FILE__) +  "/ai4r/classifiers/ib1"
 # Neural networks
 require File.dirname(__FILE__) +  "/ai4r/neural_network/backpropagation"
 require File.dirname(__FILE__) +  "/ai4r/neural_network/hopfield"

data/lib/ai4r/classifiers/classifier.rb

@@ -50,6 +50,9 @@ module Ai4r
       #     eval classifier.get_rules   
       #     puts marketing_target
       #       # =>  'Y'
+      #
+      # Note, however, that not all classifiers are able to produce rules.
+      # This method is not implemented in such classifiers.
       def get_rules
         raise NotImplementedError
       end

data/lib/ai4r/classifiers/ib1.rb

@@ -0,0 +1,121 @@
+# Author::    Sergio Fierens (Implementation only)
+# License::   MPL 1.1
+# Project::   ai4r
+# Url::       http://ai4r.rubyforge.org/
+#
+# You can redistribute it and/or modify it under the terms of 
+# the Mozilla Public License version 1.1  as published by the 
+# Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
+
+require 'set'
+require File.dirname(__FILE__) + '/../data/data_set'
+require File.dirname(__FILE__) + '/../classifiers/classifier'
+
+module Ai4r
+  module Classifiers
+
+    # = Introduction
+    # 
+    # IB1 algorithm implementation.
+    # IB1 is the simplest instance-based learning (IBL) algorithm.
+    #
+    # D. Aha, D. Kibler (1991). Instance-based learning algorithms.
+    # Machine Learning. 6:37-66.
+    #
+    # IBI is identical to the nearest neighbor algorithm except that
+    # it normalizes its attributes' ranges, processes instances
+    # incrementally, and has a simple policy for tolerating missing values
+    class IB1 < Classifier
+      
+      attr_reader :data_set
+
+      # Build a new IB1 classifier. You must provide a DataSet instance
+      # as parameter. The last attribute of each item is considered as 
+      # the item class.
+      def build(data_set)
+        data_set.check_not_empty
+        @data_set = data_set
+        @min_values = Array.new(data_set.data_labels.length)
+        @max_values = Array.new(data_set.data_labels.length)
+        data_set.data_items.each { |data_item| update_min_max(data_item[0...-1]) }
+        return self
+      end
+      
+      # You can evaluate new data, predicting its class.
+      # e.g.
+      #   classifier.eval(['New York',  '<30', 'F'])  # => 'Y'      
+      def eval(data)
+        update_min_max(data)
+        min_distance = 1.0/0
+        klass = nil
+        @data_set.data_items.each do |train_item|
+          d = distance(data, train_item)
+          if d < min_distance
+            min_distance = d
+            klass = train_item.last
+          end
+        end
+        return klass
+      end
+      
+      protected
+
+      # We keep in the state the min and max value of each attribute,
+      # to provide normalized distances between to values of a numeric attribute
+      def update_min_max(atts)
+        atts.each_with_index do |att, i|
+          if att && att.is_a?(Numeric)
+            @min_values[i] = att if @min_values[i].nil? || @min_values[i] > att
+            @max_values[i] = att if @max_values[i].nil? || @max_values[i] < att
+          end
+        end
+      end
+
+      # Normalized distance between 2 instances
+      #
+      #
+      # Returns sum of
+      #  * squared difference between normalized numeric att values
+      #  * 1 for nominal atts which differs or one is missing
+      #  * 1 if both atts are missing
+      #  * normalized numeric att value if other att value is missing and > 0.5
+      #  * 1.0-normalized numeric att value if other att value is missing and < 0.5
+      def distance(a, b)
+        d = 0
+        a.each_with_index do |att_a, i|
+          att_b = b[i]
+          if att_a.nil?
+            if att_b.is_a? Numeric
+              diff = norm(att_b, i)
+              diff = 1.0 - diff if diff < 0.5
+            else
+              diff = 1
+            end
+          elsif att_a.is_a? Numeric
+            if att_b.is_a? Numeric
+              diff = norm(att_a, i) - norm(att_b, i);
+            else
+              diff = norm(att_a, i)
+              diff = 1.0 - diff if diff < 0.5
+            end
+          elsif att_a != att_b
+            diff = 1
+          else
+            diff = 0
+          end
+          d += diff * diff
+        end
+        return d
+      end
+
+      # Returns normalized value att
+      #
+      # index is the index of the attribute in the instance.
+      def norm(att, index)
+        return 0 if @min_values[index].nil?
+        return 1.0*(att - @min_values[index]) / (@max_values[index] -@min_values[index]);
+      end
+      
+    end
+  end
+end

data/lib/ai4r/classifiers/naive_bayes.rb

@@ -54,6 +54,7 @@ module Ai4r
     #     build data
     #   b.eval(["Red", "SUV", "Domestic"])
     #
+    
     class NaiveBayes < Classifier
 
       parameters_info :m => "Default value is set to 0. It may be set to a value greater than " +
@@ -150,7 +151,7 @@ module Ai4r
 
       # returns the name of the class when the index is found
       def index_to_klass(index)
-        @klass_index.has_value?(index) ? @klass_index.index(index) : nil
+        @klass_index.has_value?(index) ? @klass_index.key(index) : nil
       end
 
       # initializes @values and @klass_index; maps a certain value to a uniq index
@@ -257,3 +258,8 @@ module Ai4r
     end
   end
 end
+
+# Monkeypatch to support both ruby 1.8 and 1.9 (key vs index method)
+class Hash
+  alias_method(:key, :index) unless method_defined?(:key)
+end

data/lib/ai4r/classifiers/zero_r.rb

@@ -30,13 +30,13 @@ module Ai4r
       def build(data_set)
         data_set.check_not_empty
         @data_set = data_set
-        frequence = {}
+        frequencies = {}
         max_freq = 0
         @class_value = nil
         @data_set.data_items.each do |example|
           class_value = example.last
-          class_frequency = frequence[class_value]
-          class_frequency = (class_frequency) ? class_frequency+1 : 1
+          frequencies[class_value] = frequencies[class_value].nil? ? 1 : frequencies[class_value] + 1
+          class_frequency = frequencies[class_value]
           if max_freq < class_frequency
             max_freq = class_frequency
             @class_value = class_value

data/lib/ai4r/neural_network/backpropagation.rb

@@ -100,7 +100,7 @@ module Ai4r
         :momentum => "By default 0.1. Set this parameter to 0 to disable "+
             "momentum."
           
-      attr_accessor :structure, :weights, :activation_nodes
+      attr_accessor :structure, :weights, :activation_nodes, :last_changes
       
       # Creates a new network specifying the its architecture.
       # E.g.
@@ -158,9 +158,42 @@ module Ai4r
         init_last_changes
         return self
       end
-      
+
       protected
 
+      # Custom serialization. It used to fail trying to serialize because
+      # it uses lambda functions internally, and they cannot be serialized.
+      # Now it does not fail, but if you customize the values of
+      # * initial_weight_function
+      # * propagation_function
+      # * derivative_propagation_function
+      # you must restore their values manually after loading the instance.
+      def marshal_dump
+        [
+          @structure,
+          @disable_bias,
+          @learning_rate,
+          @momentum,
+          @weights,
+          @last_changes,
+          @activation_nodes
+        ]
+     end
+
+     def marshal_load(ary)
+       @structure,
+          @disable_bias,
+          @learning_rate,
+          @momentum,
+          @weights,
+          @last_changes,
+          @activation_nodes = ary
+       @initial_weight_function = lambda { |n, i, j| ((rand 2000)/1000.0) - 1}
+       @propagation_function = lambda { |x| 1/(1+Math.exp(-1*(x))) } #lambda { |x| Math.tanh(x) }
+       @derivative_propagation_function = lambda { |y| y*(1-y) } #lambda { |y| 1.0 - y**2 }
+     end
+
+
       # Propagate error backwards
       def backpropagate(expected_output_values)
         check_output_dimension(expected_output_values.length)

data/test/classifiers/hyperpipes_test.rb

@@ -7,7 +7,7 @@
 # the Mozilla Public License version 1.1  as published by the 
 # Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
 
-require File.dirname(__FILE__) + '/../../lib/ai4r/classifiers/hyperpipes'
+require 'ai4r/classifiers/hyperpipes'
 require 'test/unit'
 
 class Ai4r::Classifiers::Hyperpipes
@@ -81,4 +81,4 @@ class HyperpipesTest < Test::Unit::TestCase
   end
 end
 
-  
+  

data/test/classifiers/ib1_test.rb

@@ -0,0 +1,78 @@
+# Author::    Sergio Fierens
+# License::   MPL 1.1
+# Project::   ai4r
+# Url::       http://ai4r.rubyforge.org/
+#
+# You can redistribute it and/or modify it under the terms of 
+# the Mozilla Public License version 1.1  as published by the 
+# Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
+
+require 'ai4r/classifiers/ib1'
+require 'test/unit'
+
+class Ai4r::Classifiers::IB1
+  attr_accessor :data_set, :min_values, :max_values
+end
+
+include Ai4r::Classifiers
+include Ai4r::Data
+
+class IB1Test < Test::Unit::TestCase
+
+  @@data_labels = [ 'city', 'age', 'gender', 'marketing_target'  ]
+
+  @@data_items = [['New York',  25, 'M', 'Y'],
+              ['New York',  23, 'M', 'Y'],
+              ['New York',  18, 'M', 'Y'],
+              ['Chicago',   43, 'M', 'Y'],
+              ['New York',  34, 'F', 'N'],
+              ['Chicago',   33, 'F', 'Y'],
+              ['New York',  31, 'F', 'N'],
+              ['Chicago',   55, 'M', 'N'],
+              ['New York',  58, 'F', 'N'],
+              ['New York',  59, 'M', 'N'],
+              ['Chicago',   71, 'M', 'N'],
+              ['New York',  60, 'F', 'N'],
+              ['Chicago',   85, 'F', 'Y']
+            ]
+  
+  
+  def setup
+    IB1.send(:public, *IB1.protected_instance_methods)
+    @data_set = DataSet.new(:data_items => @@data_items, :data_labels => @@data_labels)
+    @classifier = IB1.new.build(@data_set)
+  end
+  
+  def test_build
+    assert_raise(ArgumentError) { IB1.new.build(DataSet.new) }
+    assert @classifier.data_set
+    assert_equal [nil, 18, nil, nil], @classifier.min_values
+    assert_equal [nil, 85, nil, nil], @classifier.max_values
+  end
+
+  def test_norm
+    assert_equal(0,@classifier.norm('Chicago', 0))
+    assert_in_delta(0.5522,@classifier.norm(55, 1),0.0001)
+    assert_equal(0,@classifier.norm('F', 0))
+  end
+
+  def test_distance
+    item = ['Chicago',   55, 'M', 'N']
+    assert_equal(0, @classifier.distance(['Chicago',  55, 'M'], item))
+    assert_equal(1, @classifier.distance([nil,  55, 'M'], item))
+    assert_equal(1, @classifier.distance(['New York',  55, 'M'], item))
+    assert_in_delta(0.2728, @classifier.distance(['Chicago',  20, 'M'], item), 0.0001)
+  end
+
+  def test_eval
+    classifier = IB1.new.build(@data_set)
+    assert classifier
+    assert_equal('N', classifier.eval(['Chicago',  55, 'M']))
+    assert_equal('N', classifier.eval(['New York', 35, 'F']))
+    assert_equal('Y', classifier.eval(['New York', 25, 'M']))
+    assert_equal('Y', classifier.eval(['Chicago',  85, 'F'])) 
+  end
+
+end
+
+  

data/test/classifiers/id3_test.rb

@@ -12,7 +12,7 @@
 # the Mozilla Public License version 1.1  as published by the 
 # Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
 
-require File.dirname(__FILE__) + '/../../lib/ai4r/classifiers/id3'
+require 'ai4r/classifiers/id3'
 require 'test/unit'
 
 DATA_LABELS = [ 'city', 'age_range', 'gender', 'marketing_target'  ]
@@ -205,4 +205,4 @@ class ID3Test < Test::Unit::TestCase
   end
 end
 
-  
+  

data/test/classifiers/multilayer_perceptron_test.rb

@@ -1,6 +1,6 @@
 require 'test/unit'
-require File.dirname(__FILE__) + '/../../lib/ai4r/classifiers/multilayer_perceptron'
-require File.dirname(__FILE__) + '/../../lib/ai4r/data/data_set'
+require 'ai4r/classifiers/multilayer_perceptron'
+require 'ai4r/data/data_set'
 
 # Make all accessors and methods public
 class Ai4r::Classifiers::MultilayerPerceptron

data/test/classifiers/naive_bayes_test.rb

@@ -1,5 +1,5 @@
-require File.dirname(__FILE__) + '/../../lib/ai4r/classifiers/naive_bayes'
-require File.dirname(__FILE__) + '/../../lib/ai4r/data/data_set'
+require 'ai4r/classifiers/naive_bayes'
+require 'ai4r/data/data_set'
 require 'test/unit'
 
 include Ai4r::Classifiers
@@ -40,4 +40,4 @@ class NaiveBayesTest < Test::Unit::TestCase
     assert_in_delta 0.58, map["No"], 0.1
   end
 
-end
+end

data/test/classifiers/one_r_test.rb

@@ -1,5 +1,5 @@
 require 'test/unit'
-require File.dirname(__FILE__) + '/../../lib/ai4r/classifiers/one_r'
+require 'ai4r/classifiers/one_r'
 
 class OneRTest < Test::Unit::TestCase
   

data/test/classifiers/prism_test.rb

@@ -1,5 +1,5 @@
 require 'test/unit'
-require File.dirname(__FILE__) + '/../../lib/ai4r/classifiers/prism'
+require 'ai4r/classifiers/prism'
 
 
 class PrismTest < Test::Unit::TestCase

data/test/classifiers/zero_r_test.rb

@@ -1,20 +1,21 @@
 require 'test/unit'
-require File.dirname(__FILE__) + '/../../lib/ai4r/classifiers/zero_r'
-require File.dirname(__FILE__) + '/../../lib/ai4r/data/data_set'
+require 'ai4r/classifiers/zero_r'
+require 'ai4r/data/data_set'
 
 class ZeroRTest < Test::Unit::TestCase
   
   include Ai4r::Classifiers
   include Ai4r::Data
-  
-  @@data_examples = [   ['New York',  '<30',      'M', 'Y'],
-                ['Chicago',     '<30',      'M', 'Y'],
-                ['New York',  '<30',      'M', 'Y'],
-                ['New York',  '[30-50)',  'F', 'N'],
-                ['Chicago',     '[30-50)',  'F', 'Y'],
-                ['New York',  '[30-50)',  'F', 'N'],
-                ['Chicago',     '[50-80]', 'M', 'N'],
-              ]
+
+  @@data_examples = [
+          ['New York',  '[30-50)',  'F', 'N'],
+          ['New York',  '<30',      'M', 'Y'],
+          ['Chicago',     '<30',      'M', 'Y'],
+          ['New York',  '<30',      'M', 'Y'],
+          ['Chicago',     '[30-50)',  'F', 'Y'],
+          ['New York',  '[30-50)',  'F', 'N'],
+          ['Chicago',     '[50-80]', 'M', 'N'],
+  ]
 
   @@data_labels = [ 'city', 'age_range', 'gender', 'marketing_target'  ]
   

data/test/clusterers/average_linkage_test.rb

@@ -8,7 +8,7 @@
 # Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
 
 require 'test/unit'
-require File.dirname(__FILE__) + '/../../lib/ai4r/clusterers/average_linkage'
+require 'ai4r/clusterers/average_linkage'
 
 class Ai4r::Clusterers::AverageLinkage < Ai4r::Clusterers::SingleLinkage
   attr_accessor :data_set, :number_of_clusters, :clusters, :distance_matrix

data/test/clusterers/bisecting_k_means_test.rb

@@ -8,7 +8,7 @@
 # Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
 
 require 'test/unit'
-require File.dirname(__FILE__) + '/../../lib/ai4r/clusterers/bisecting_k_means'
+require 'ai4r/clusterers/bisecting_k_means'
 
 class BisectingKMeansTest < Test::Unit::TestCase
   

data/test/clusterers/centroid_linkage_test.rb

@@ -8,7 +8,7 @@
 # Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
 
 require 'test/unit'
-require File.dirname(__FILE__) + '/../../lib/ai4r/clusterers/centroid_linkage'
+require 'ai4r/clusterers/centroid_linkage'
 
 class Ai4r::Clusterers::CentroidLinkage
   attr_accessor :data_set, :number_of_clusters, :clusters, :distance_matrix, :index_clusters

data/test/clusterers/complete_linkage_test.rb

@@ -8,7 +8,7 @@
 # Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
 
 require 'test/unit'
-require File.dirname(__FILE__) + '/../../lib/ai4r/clusterers/complete_linkage'
+require 'ai4r/clusterers/complete_linkage'
 
 class Ai4r::Clusterers::CompleteLinkage
   attr_accessor :data_set, :number_of_clusters, :clusters, :distance_matrix

data/test/clusterers/diana_test.rb

@@ -8,7 +8,7 @@
 # Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
 
 require 'test/unit'
-require File.dirname(__FILE__) + '/../../lib/ai4r/clusterers/diana'
+require 'ai4r/clusterers/diana'
 
 class Ai4r::Clusterers::Diana
   attr_accessor :data_set, :number_of_clusters, :clusters
@@ -66,4 +66,4 @@ class DianaTest < Test::Unit::TestCase
       max_distance_difference(data_set_a, data_set_b)
   end
   
-end
+end

data/test/clusterers/k_means_test.rb

@@ -8,7 +8,7 @@
 # Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
 
 require 'test/unit'
-require File.dirname(__FILE__) + '/../../lib/ai4r/clusterers/k_means'
+require 'ai4r/clusterers/k_means'
 
 class KMeansTest < Test::Unit::TestCase
   

data/test/clusterers/median_linkage_test.rb

@@ -8,7 +8,7 @@
 # Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
 
 require 'test/unit'
-require File.dirname(__FILE__) + '/../../lib/ai4r/clusterers/median_linkage'
+require 'ai4r/clusterers/median_linkage'
 
 class Ai4r::Clusterers::MedianLinkage
   attr_accessor :data_set, :number_of_clusters, :clusters, :distance_matrix, :index_clusters

data/test/clusterers/single_linkage_test.rb

@@ -8,7 +8,7 @@
 # Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
 
 require 'test/unit'
-require File.dirname(__FILE__) + '/../../lib/ai4r/clusterers/single_linkage'
+require 'ai4r/clusterers/single_linkage'
  
 class Ai4r::Clusterers::SingleLinkage
   attr_accessor :data_set, :number_of_clusters, :clusters, :distance_matrix

data/test/clusterers/ward_linkage_test.rb

@@ -8,7 +8,7 @@
 # Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
 
 require 'test/unit'
-require File.dirname(__FILE__) + '/../../lib/ai4r/clusterers/ward_linkage'
+require 'ai4r/clusterers/ward_linkage'
 
 class Ai4r::Clusterers::WardLinkage
   attr_accessor :data_set, :number_of_clusters, :clusters, :distance_matrix, :index_clusters

data/test/clusterers/weighted_average_linkage_test.rb

@@ -8,7 +8,7 @@
 # Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
 
 require 'test/unit'
-require File.dirname(__FILE__) + '/../../lib/ai4r/clusterers/weighted_average_linkage'
+require 'ai4r/clusterers/weighted_average_linkage'
 
 class Ai4r::Clusterers::WeightedAverageLinkage
   attr_accessor :data_set, :number_of_clusters, :clusters, :distance_matrix, :index_clusters

data/test/data/data_set_test.rb

@@ -8,7 +8,7 @@
 # Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
 
 require 'test/unit'
-require File.dirname(__FILE__) + '/../../lib/ai4r/data/data_set'
+require 'ai4r/data/data_set'
 
 module Ai4r
   module Data

data/test/data/proximity_test.rb

@@ -8,7 +8,7 @@
 # Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
 
 require 'test/unit'
-require File.dirname(__FILE__) + '/../../lib/ai4r/data/proximity'
+require 'ai4r/data/proximity'
 
 module Ai4r
   module Data
@@ -78,4 +78,4 @@ module Ai4r
       
     end
   end
-end
+end

data/test/data/statistics_test.rb

@@ -8,7 +8,7 @@
 # Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
 
 require 'test/unit'
-require File.dirname(__FILE__) + '/../../lib/ai4r/data/statistics'
+require 'ai4r/data/statistics'
 
 module Ai4r
   module Data
@@ -62,4 +62,4 @@ module Ai4r
       
     end
   end
-end
+end

data/test/experiment/classifier_evaluator_test.rb

@@ -8,8 +8,8 @@
 # Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
 
 require 'test/unit'
-require File.dirname(__FILE__) + '/../../lib/ai4r/experiment/classifier_evaluator'
-require File.dirname(__FILE__) + '/../../lib/ai4r/classifiers/classifier'
+require 'ai4r/experiment/classifier_evaluator'
+require 'ai4r/classifiers/classifier'
 
 class MockClassifier < Ai4r::Classifiers::Classifier
   

data/test/genetic_algorithm/chromosome_test.rb

@@ -8,8 +8,7 @@
 # Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
  
 
-require File.dirname(__FILE__) + '/../../lib/ai4r/genetic_algorithm/genetic_algorithm'
-
+require 'ai4r/genetic_algorithm/genetic_algorithm'
 require 'test/unit'
 
 module Ai4r

data/test/genetic_algorithm/genetic_algorithm_test.rb

@@ -7,7 +7,7 @@
 # the Mozilla Public License version 1.1  as published by the 
 # Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
  
-require File.dirname(__FILE__) + '/../../lib/ai4r/genetic_algorithm/genetic_algorithm'
+require 'ai4r/genetic_algorithm/genetic_algorithm'
 require 'test/unit'
 
 module Ai4r
@@ -78,4 +78,4 @@ module Ai4r
 
   end
 
-end
+end

data/test/neural_network/backpropagation_test.rb

@@ -15,7 +15,7 @@
 # 
  
 
-require File.dirname(__FILE__) + '/../../lib/ai4r/neural_network/backpropagation'
+require 'ai4r/neural_network/backpropagation'
 require 'test/unit'
 
 Ai4r::NeuralNetwork::Backpropagation.send(:public, *Ai4r::NeuralNetwork::Backpropagation.protected_instance_methods)  
@@ -62,8 +62,21 @@ module Ai4r
         assert y.length == 7
       end
 
+      def test_dump
+        net = Backpropagation.new([3, 2]).init_network
+        s = Marshal.dump(net)
+        x = Marshal.load(s)
+        assert_equal net.structure, x.structure
+        assert_equal net.disable_bias, x.disable_bias
+        assert_equal net.learning_rate, x.learning_rate
+        assert_equal net.momentum, x.momentum
+        assert_equal net.weights, x.weights
+        assert_equal net.last_changes, x.last_changes
+        assert_equal net.activation_nodes, x.activation_nodes
+      end
+
     end
 
   end
 
-end
+end

data/test/neural_network/hopfield_test.rb

@@ -9,7 +9,7 @@
 # the Mozilla Public License version 1.1  as published by the 
 # Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
 
-require File.dirname(__FILE__) + '/../../lib/ai4r'
+require 'ai4r'
 require 'test/unit'
 
 Ai4r::NeuralNetwork::Hopfield.send(:public, *Ai4r::NeuralNetwork::Hopfield.protected_instance_methods)  
@@ -69,4 +69,4 @@ module Ai4r
 
     end
   end
-end
+end

data/test/som/som_test.rb

@@ -10,7 +10,7 @@
 # the Mozilla Public License version 1.1  as published by the
 # Mozilla Foundation at http://www.mozilla.org/MPL/MPL-1.1.txt
 
-require File.dirname(__FILE__) + '/../../lib/ai4r/som/som'
+require 'ai4r/som/som'
 require 'test/unit'
 
 module Ai4r
@@ -94,4 +94,4 @@ module Ai4r
 
   end
 
-end
+end

metadata

@@ -1,131 +1,165 @@
 --- !ruby/object:Gem::Specification 
-rubygems_version: 0.9.4
-specification_version: 1
 name: ai4r
 version: !ruby/object:Gem::Version 
-  version: "1.9"
-date: 2009-07-01 00:00:00 +01:00
-summary: Ruby implementations of algorithms covering several Artificial intelligence fields, including Genetic algorithms, Neural Networks, machine learning, and clustering.
-require_paths: 
-- lib
-email: sergio@jadeferret.com
-homepage: http://ai4r.rubyforge.org
-rubyforge_project: ai4r
-description: 
-autorequire: 
-default_executable: 
-bindir: bin
-has_rdoc: true
-required_ruby_version: !ruby/object:Gem::Version::Requirement 
-  requirements: 
-  - - ">"
-    - !ruby/object:Gem::Version 
-      version: 0.0.0
-  version: 
+  hash: 25
+  prerelease: 
+  segments: 
+  - 1
+  - 11
+  version: "1.11"
 platform: ruby
-signing_key: 
-cert_chain: 
-post_install_message: 
 authors: 
 - Sergio Fierens
+autorequire: 
+bindir: bin
+cert_chain: []
+
+date: 2012-02-28 00:00:00 Z
+dependencies: []
+
+description: 
+email: sergio.fierens@gmail.com
+executables: []
+
+extensions: []
+
+extra_rdoc_files: 
+- README.rdoc
 files: 
-- examples/classifiers
-- examples/classifiers/id3_data.csv
+- examples/som/som_multi_node_example.rb
+- examples/som/som_single_example.rb
+- examples/som/som_data.rb
+- examples/neural_network/patterns_with_noise.rb
+- examples/neural_network/patterns_with_base_noise.rb
+- examples/neural_network/training_patterns.rb
+- examples/neural_network/xor_example.rb
+- examples/neural_network/backpropagation_example.rb
 - examples/classifiers/id3_example.rb
-- examples/classifiers/naive_bayes_data.csv
 - examples/classifiers/naive_bayes_example.rb
+- examples/classifiers/id3_data.csv
+- examples/classifiers/naive_bayes_data.csv
 - examples/classifiers/results.txt
-- examples/clusterers
-- examples/genetic_algorithm
-- examples/genetic_algorithm/genetic_algorithm_example.rb
 - examples/genetic_algorithm/travel_cost.csv
-- examples/neural_network
-- examples/neural_network/backpropagation_example.rb
-- examples/neural_network/patterns_with_base_noise.rb
-- examples/neural_network/patterns_with_noise.rb
-- examples/neural_network/training_patterns.rb
-- examples/neural_network/xor_example.rb
-- examples/som
-- examples/som/som_data.rb
-- examples/som/som_multi_node_example.rb
-- examples/som/som_single_example.rb
-- lib/ai4r
-- lib/ai4r/classifiers
-- lib/ai4r/classifiers/classifier.rb
-- lib/ai4r/classifiers/hyperpipes.rb
-- lib/ai4r/classifiers/id3.rb
-- lib/ai4r/classifiers/multilayer_perceptron.rb
-- lib/ai4r/classifiers/naive_bayes.rb
-- lib/ai4r/classifiers/one_r.rb
-- lib/ai4r/classifiers/prism.rb
-- lib/ai4r/classifiers/zero_r.rb
-- lib/ai4r/clusterers
-- lib/ai4r/clusterers/average_linkage.rb
-- lib/ai4r/clusterers/bisecting_k_means.rb
-- lib/ai4r/clusterers/centroid_linkage.rb
+- examples/genetic_algorithm/genetic_algorithm_example.rb
+- lib/ai4r.rb
+- lib/ai4r/som/layer.rb
+- lib/ai4r/som/node.rb
+- lib/ai4r/som/som.rb
+- lib/ai4r/som/two_phase_layer.rb
+- lib/ai4r/clusterers/median_linkage.rb
 - lib/ai4r/clusterers/clusterer.rb
-- lib/ai4r/clusterers/complete_linkage.rb
-- lib/ai4r/clusterers/diana.rb
 - lib/ai4r/clusterers/k_means.rb
-- lib/ai4r/clusterers/median_linkage.rb
 - lib/ai4r/clusterers/single_linkage.rb
-- lib/ai4r/clusterers/ward_linkage.rb
+- lib/ai4r/clusterers/diana.rb
 - lib/ai4r/clusterers/weighted_average_linkage.rb
-- lib/ai4r/data
+- lib/ai4r/clusterers/centroid_linkage.rb
+- lib/ai4r/clusterers/complete_linkage.rb
+- lib/ai4r/clusterers/average_linkage.rb
+- lib/ai4r/clusterers/bisecting_k_means.rb
+- lib/ai4r/clusterers/ward_linkage.rb
+- lib/ai4r/data/statistics.rb
 - lib/ai4r/data/data_set.rb
 - lib/ai4r/data/parameterizable.rb
 - lib/ai4r/data/proximity.rb
-- lib/ai4r/data/statistics.rb
-- lib/ai4r/experiment
-- lib/ai4r/experiment/classifier_evaluator.rb
-- lib/ai4r/genetic_algorithm
-- lib/ai4r/genetic_algorithm/genetic_algorithm.rb
-- lib/ai4r/neural_network
 - lib/ai4r/neural_network/backpropagation.rb
 - lib/ai4r/neural_network/hopfield.rb
-- lib/ai4r/som
-- lib/ai4r/som/layer.rb
-- lib/ai4r/som/node.rb
-- lib/ai4r/som/som.rb
-- lib/ai4r/som/two_phase_layer.rb
-- lib/ai4r.rb
+- lib/ai4r/classifiers/one_r.rb
+- lib/ai4r/classifiers/multilayer_perceptron.rb
+- lib/ai4r/classifiers/classifier.rb
+- lib/ai4r/classifiers/ib1.rb
+- lib/ai4r/classifiers/prism.rb
+- lib/ai4r/classifiers/zero_r.rb
+- lib/ai4r/classifiers/id3.rb
+- lib/ai4r/classifiers/naive_bayes.rb
+- lib/ai4r/classifiers/hyperpipes.rb
+- lib/ai4r/experiment/classifier_evaluator.rb
+- lib/ai4r/genetic_algorithm/genetic_algorithm.rb
 - README.rdoc
-test_files: 
-- test/classifiers/hyperpipes_test.rb
-- test/classifiers/id3_test.rb
-- test/classifiers/multilayer_perceptron_test.rb
-- test/classifiers/naive_bayes_test.rb
-- test/classifiers/one_r_test.rb
-- test/classifiers/prism_test.rb
-- test/classifiers/zero_r_test.rb
+- test/som/som_test.rb
+- test/clusterers/ward_linkage_test.rb
+- test/clusterers/median_linkage_test.rb
+- test/clusterers/diana_test.rb
 - test/clusterers/average_linkage_test.rb
-- test/clusterers/bisecting_k_means_test.rb
 - test/clusterers/centroid_linkage_test.rb
 - test/clusterers/complete_linkage_test.rb
-- test/clusterers/diana_test.rb
-- test/clusterers/k_means_test.rb
-- test/clusterers/median_linkage_test.rb
 - test/clusterers/single_linkage_test.rb
-- test/clusterers/ward_linkage_test.rb
+- test/clusterers/bisecting_k_means_test.rb
+- test/clusterers/k_means_test.rb
 - test/clusterers/weighted_average_linkage_test.rb
-- test/data/data_set_test.rb
 - test/data/proximity_test.rb
 - test/data/statistics_test.rb
+- test/data/data_set_test.rb
+- test/neural_network/backpropagation_test.rb
+- test/neural_network/hopfield_test.rb
+- test/classifiers/one_r_test.rb
+- test/classifiers/multilayer_perceptron_test.rb
+- test/classifiers/hyperpipes_test.rb
+- test/classifiers/ib1_test.rb
+- test/classifiers/zero_r_test.rb
+- test/classifiers/naive_bayes_test.rb
+- test/classifiers/id3_test.rb
+- test/classifiers/prism_test.rb
 - test/experiment/classifier_evaluator_test.rb
 - test/genetic_algorithm/chromosome_test.rb
 - test/genetic_algorithm/genetic_algorithm_test.rb
-- test/neural_network/backpropagation_test.rb
-- test/neural_network/hopfield_test.rb
-- test/som/som_test.rb
-rdoc_options: []
-
-extra_rdoc_files: 
-- README.rdoc
-executables: []
+homepage: http://ai4r.rubyforge.org
+licenses: []
 
-extensions: []
+post_install_message: 
+rdoc_options: []
 
+require_paths: 
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement 
+  none: false
+  requirements: 
+  - - ">="
+    - !ruby/object:Gem::Version 
+      hash: 3
+      segments: 
+      - 0
+      version: "0"
+required_rubygems_version: !ruby/object:Gem::Requirement 
+  none: false
+  requirements: 
+  - - ">="
+    - !ruby/object:Gem::Version 
+      hash: 3
+      segments: 
+      - 0
+      version: "0"
 requirements: []
 
-dependencies: []
-
+rubyforge_project: ai4r
+rubygems_version: 1.7.2
+signing_key: 
+specification_version: 3
+summary: Ruby implementations of algorithms covering several Artificial intelligence fields, including Genetic algorithms, Neural Networks, machine learning, and clustering.
+test_files: 
+- test/som/som_test.rb
+- test/clusterers/ward_linkage_test.rb
+- test/clusterers/median_linkage_test.rb
+- test/clusterers/diana_test.rb
+- test/clusterers/average_linkage_test.rb
+- test/clusterers/centroid_linkage_test.rb
+- test/clusterers/complete_linkage_test.rb
+- test/clusterers/single_linkage_test.rb
+- test/clusterers/bisecting_k_means_test.rb
+- test/clusterers/k_means_test.rb
+- test/clusterers/weighted_average_linkage_test.rb
+- test/data/proximity_test.rb
+- test/data/statistics_test.rb
+- test/data/data_set_test.rb
+- test/neural_network/backpropagation_test.rb
+- test/neural_network/hopfield_test.rb
+- test/classifiers/one_r_test.rb
+- test/classifiers/multilayer_perceptron_test.rb
+- test/classifiers/hyperpipes_test.rb
+- test/classifiers/ib1_test.rb
+- test/classifiers/zero_r_test.rb
+- test/classifiers/naive_bayes_test.rb
+- test/classifiers/id3_test.rb
+- test/classifiers/prism_test.rb
+- test/experiment/classifier_evaluator_test.rb
+- test/genetic_algorithm/chromosome_test.rb
+- test/genetic_algorithm/genetic_algorithm_test.rb