agent-petri-dish 0.1.0

data/scripts/migrate-configs.rb

@@ -0,0 +1,73 @@
+#!/usr/bin/env ruby
+# frozen_string_literal: true
+
+# Migrates test configs from v1 (sidecar) to v2 (hooks) format.
+# Uses text manipulation rather than YAML.dump to preserve formatting.
+
+require "yaml"
+
+TESTS_DIR = File.join(__dir__, "..", "tests")
+
+Dir.glob("#{TESTS_DIR}/*/config.yml").sort.each do |path|
+  test_name = File.basename(File.dirname(path))
+  text = File.read(path)
+
+  # Skip if already migrated (has prompt_mode, no sidecar)
+  unless text.include?("sidecar:")
+    puts "Skip (no sidecar): #{test_name}"
+    next
+  end
+
+  data = YAML.safe_load(text)
+  sidecar = data["sidecar"] || {}
+  mode = sidecar["mode"] || "accept"
+  timeout = sidecar["timeout"] || 300
+
+  # 1. Remove the sidecar block (and trailing newline)
+  text.gsub!(/\nsidecar:\n(?:  .+\n)*/, "\n")
+
+  # 2. Add prompt_mode at the end
+  text.rstrip!
+  text << "\n\nprompt_mode: #{mode}\n"
+
+  # 3. Add timeout to runtime if not already there
+  unless text.match?(/^  timeout:/)
+    # Insert timeout as last line of runtime block
+    text.sub!(/^(runtime:\n(?:  .+\n)*)/) do
+      "#{$1}  timeout: #{timeout}\n"
+    end
+  end
+
+  # 4. Move permissions array into settings.permissions.allow
+  env = data["environment"] || {}
+  if env["permissions"].is_a?(Array)
+    perms = env["permissions"]
+    if perms.empty?
+      # Just remove empty permissions
+      text.sub!(/^  permissions: \[\]\n/, "")
+    else
+      # Build the settings.permissions.allow block
+      perms_yaml = perms.map { |p| "        - #{p}" }.join("\n")
+
+      # Remove the old permissions block
+      text.sub!(/^  permissions:\n(?:    - .+\n)*/, "")
+
+      # Add permissions into settings
+      if text.match?(/^    sandbox:/)
+        # Insert after settings block content
+        text.sub!(/^(  settings:\n(?:    .+\n(?:      .+\n)*)*)/) do
+          "#{$1}    permissions:\n      allow:\n#{perms_yaml}\n"
+        end
+      elsif text.match?(/^  settings: \{\}/)
+        text.sub!("  settings: {}", "  settings:\n    permissions:\n      allow:\n#{perms_yaml}")
+      end
+    end
+  end
+
+  # 5. Update preamble path
+  text.gsub!("lib/preamble-sandbox-lean.md", "lib/preambles/sandbox.md")
+  text.gsub!("lib/preamble-sandbox.md", "lib/preambles/sandbox.md")
+
+  File.write(path, text)
+  puts "Migrated: #{test_name}"
+end

data/scripts/migrate-prompts.rb

@@ -0,0 +1,75 @@
+#!/usr/bin/env ruby
+# frozen_string_literal: true
+
+# Migrates prompt.md files from v1 (prompt-check protocol) to v2 (hook-driven).
+#
+# Changes:
+# 1. Replace Protocol sections that mention "Prompt check" with simplified version
+# 2. Replace "After All Tests" sections with SIGNAL_FILE instruction
+# 3. Add "After All Tests" + SIGNAL_FILE if missing
+
+TESTS_DIR = File.join(__dir__, "..", "tests")
+
+SIMPLE_PROTOCOL = <<~PROTOCOL.rstrip
+  ## Protocol
+
+  Follow the test protocol from the preamble. Run each command, report the result, output a RESULT line, move to the next.
+PROTOCOL
+
+SIMPLE_AFTER = <<~AFTER.rstrip
+  ## After All Tests
+
+  Write "done" to the SIGNAL_FILE.
+AFTER
+
+Dir.glob("#{TESTS_DIR}/*/prompt.md").sort.each do |path|
+  test_name = File.basename(File.dirname(path))
+  text = File.read(path)
+  changed = false
+
+  # Skip if already has SIGNAL_FILE (already v2)
+  if text.include?("SIGNAL_FILE") && !text.include?("Prompt check") && !text.include?("prompt check")
+    puts "Skip (already v2): #{test_name}"
+    next
+  end
+
+  # 1. Replace Protocol section that contains "Prompt check"
+  #    Match from "## Protocol" to the next "##" heading or "## Test" heading
+  if text =~ /^## Protocol\n/
+    # Find the protocol section boundaries
+    proto_start = text.index("## Protocol\n")
+    # Find the next ## heading after the protocol
+    rest_after_proto = text[proto_start + "## Protocol\n".length..]
+    next_heading = rest_after_proto.index(/^## /)
+
+    if next_heading
+      old_protocol = text[proto_start, "## Protocol\n".length + next_heading]
+      if old_protocol.include?("Prompt check") || old_protocol.include?("prompt check")
+        text = text.sub(old_protocol, SIMPLE_PROTOCOL + "\n\n")
+        changed = true
+      end
+    end
+  end
+
+  # 2. Replace "After All Tests" section
+  if text =~ /^## After All Tests\n/
+    after_start = text.index("## After All Tests\n")
+    old_after = text[after_start..]
+
+    unless old_after.include?("SIGNAL_FILE")
+      text = text[0...after_start] + SIMPLE_AFTER + "\n"
+      changed = true
+    end
+  elsif !text.include?("SIGNAL_FILE")
+    # 3. Add After All Tests if missing entirely
+    text = text.rstrip + "\n\n" + SIMPLE_AFTER + "\n"
+    changed = true
+  end
+
+  if changed
+    File.write(path, text)
+    puts "Migrated: #{test_name}"
+  else
+    puts "Skip (no changes needed): #{test_name}"
+  end
+end

metadata

@@ -0,0 +1,70 @@
+--- !ruby/object:Gem::Specification
+name: agent-petri-dish
+version: !ruby/object:Gem::Version
+  version: 0.1.0
+platform: ruby
+authors:
+- Josh Nichols
+bindir: bin
+cert_chain: []
+date: 1980-01-02 00:00:00.000000000 Z
+dependencies: []
+description: petri-dish runs Claude Code sessions inside isolated cenv environments,
+  captures hook events, and correlates them into structured results. Your ~/.claude
+  is production; the dish is where you do science.
+email:
+- josh.nichols@gmail.com
+executables:
+- petri-dish
+extensions: []
+extra_rdoc_files: []
+files:
+- CONTRIBUTING.md
+- LICENSE
+- README.md
+- bin/petri-dish
+- hooks/event-logger.sh
+- hooks/permission-handler.sh
+- lib/petri-dish.rb
+- lib/petri_dish.rb
+- lib/petri_dish/cli.rb
+- lib/petri_dish/config.rb
+- lib/petri_dish/environment.rb
+- lib/petri_dish/hook_log.rb
+- lib/petri_dish/preambles/escape-hatch.md
+- lib/petri_dish/preambles/guidance.md
+- lib/petri_dish/preambles/permissions.md
+- lib/petri_dish/preambles/sandbox.md
+- lib/petri_dish/results_builder.rb
+- lib/petri_dish/runner.rb
+- lib/petri_dish/transcript.rb
+- lib/petri_dish/version.rb
+- scripts/analyze-hooks.py
+- scripts/hook-block-pattern.sh
+- scripts/hook-logger.sh
+- scripts/inspect-session.sh
+- scripts/migrate-configs.rb
+- scripts/migrate-prompts.rb
+homepage: https://github.com/technicalpickles/petri-dish
+licenses:
+- MIT
+metadata:
+  homepage_uri: https://github.com/technicalpickles/petri-dish
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '3.2'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubygems_version: 4.0.6
+specification_version: 4
+summary: Isolated, repeatable experiments against agentic coding tools.
+test_files: []