adiwg-mdtranslator 0.10.2 → 0.12.0

data/lib/adiwg/mdtranslator/readers/mdJson/modules_0.9.0/module_geographicElement.rb

@@ -1,168 +0,0 @@
-# unpack geographic element
-# Reader - ADIwg JSON V1 to internal data structure
-# determine element type
-
-# History:
-# 	Stan Smith 2013-11-04 original script
-# 	Stan Smith 2013-11-13 added line string
-# 	Stan Smith 2013-11-13 added multi line string
-# 	Stan Smith 2013-11-18 added polygon
-#   Stan Smith 2014-04-30 complete redesign for json schema 0.3.0
-#   Stan Smith 2014-05-22 added multi polygon
-#   Stan Smith 2014-05-23 cleaned up hash copy problem by using Marshal
-#   Stan Smith 2014-05-23 added direct geometry support for Point, Line, Polygon
-#   Stan Smith 2014-05-23 added direct geometry support for MultiPoint, MultiLine, MultiPolygon
-#   Stan Smith 2014-05-23 added direct support for geometryCollection
-#   Stan Smith 2014-07-07 resolve require statements using Mdtranslator.reader_module
-
-require ADIWG::Mdtranslator.reader_module('module_geoCoordSystem', $response[:readerVersionUsed])
-require ADIWG::Mdtranslator.reader_module('module_geoProperties', $response[:readerVersionUsed])
-require ADIWG::Mdtranslator.reader_module('module_boundingBox', $response[:readerVersionUsed])
-require ADIWG::Mdtranslator.reader_module('module_point', $response[:readerVersionUsed])
-require ADIWG::Mdtranslator.reader_module('module_lineString', $response[:readerVersionUsed])
-require ADIWG::Mdtranslator.reader_module('module_polygon', $response[:readerVersionUsed])
-
-module Md_GeographicElement
-
-	def self.unpack(aGeoElements)
-
-		# only one geometry is allowed per geographic element.
-		# ... in GeoJSON each geometry is allowed a bounding box;
-		# ... This code splits bounding boxes to separate elements
-
-		# instance classes needed in script
-		aIntGeoEle = Array.new
-
-		aGeoElements.each do |hGeoJsonElement|
-
-			# instance classes needed in script
-			intMetadataClass = InternalMetadata.new
-			hGeoElement = intMetadataClass.newGeoElement
-
-			# find geographic element type
-			if hGeoJsonElement.has_key?('type')
-				elementType = hGeoJsonElement['type']
-			else
-				# invalid geographic element
-				return nil
-			end
-
-			# set geographic element id
-			if hGeoJsonElement.has_key?('id')
-				s = hGeoJsonElement['id']
-				if s != ''
-					hGeoElement[:elementId] = s
-				end
-			end
-
-			# set geographic element coordinate reference system - CRS
-			if hGeoJsonElement.has_key?('crs')
-				hGeoCrs = hGeoJsonElement['crs']
-				Md_GeoCoordSystem.unpack(hGeoCrs, hGeoElement)
-			end
-
-			# set geographic element properties
-			if hGeoJsonElement.has_key?('properties')
-				hGeoProps = hGeoJsonElement['properties']
-				Md_GeoProperties.unpack(hGeoProps, hGeoElement)
-			end
-
-			# process geographic element bounding box
-			# the bounding box must be represented as a separate geographic element for ISO
-			# need to make a deep copy of current state of geographic element for bounding box
-			if hGeoJsonElement.has_key?('bbox')
-				if hGeoJsonElement['bbox'].length == 4
-					aBBox = hGeoJsonElement['bbox']
-
-					boxElement = Marshal.load(Marshal.dump(hGeoElement))
-					boxElement[:elementGeometry] = Md_BoundingBox.unpack(aBBox)
-
-					aIntGeoEle << boxElement
-				end
-			end
-
-			# unpack geographic element
-			case elementType
-
-				# GeoJSON Features
-				when 'Feature'
-					if hGeoJsonElement.has_key?('geometry')
-						hGeometry = hGeoJsonElement['geometry']
-
-						# geoJSON requires geometry to be 'null' when geometry is bounding box only
-						# JSON null converts in parsing to ruby nil
-						unless hGeometry.nil?
-							unless hGeometry.empty?
-								if hGeometry.has_key?('type')
-									geometryType = hGeometry['type']
-									aCoordinates = hGeometry['coordinates']
-									unless aCoordinates.empty?
-										case geometryType
-											when 'Point', 'MultiPoint'
-												hGeoElement[:elementGeometry] = Md_Point.unpack(aCoordinates, geometryType)
-											when 'LineString', 'MultiLineString'
-												hGeoElement[:elementGeometry] = Md_LineString.unpack(aCoordinates, geometryType)
-											when 'Polygon', 'MultiPolygon'
-												hGeoElement[:elementGeometry] = Md_Polygon.unpack(aCoordinates, geometryType)
-											else
-												# log - the GeoJSON geometry type is not supported
-										end
-										aIntGeoEle << hGeoElement
-									end
-								end
-							end
-						end
-
-					end
-
-				# GeoJSON Feature Collection
-				when 'FeatureCollection'
-					if hGeoJsonElement.has_key?('features')
-						aFeatures = hGeoJsonElement['features']
-						unless aFeatures.empty?
-							intGeometry = intMetadataClass.newGeometry
-							intGeometry[:geoType] = 'MultiGeometry'
-							intGeometry[:geometry] = Md_GeographicElement.unpack(aFeatures)
-							hGeoElement[:elementGeometry] = intGeometry
-							aIntGeoEle << hGeoElement
-						end
-					end
-
-				# GeoJSON Geometries
-				when 'Point', 'MultiPoint'
-					aCoordinates = hGeoJsonElement['coordinates']
-					hGeoElement[:elementGeometry] = Md_Point.unpack(aCoordinates, elementType)
-					aIntGeoEle << hGeoElement
-
-				when 'LineString', 'MultiLineString'
-					aCoordinates = hGeoJsonElement['coordinates']
-					hGeoElement[:elementGeometry] = Md_LineString.unpack(aCoordinates, elementType)
-					aIntGeoEle << hGeoElement
-
-				when 'Polygon', 'MultiPolygon'
-					aCoordinates = hGeoJsonElement['coordinates']
-					hGeoElement[:elementGeometry] = Md_Polygon.unpack(aCoordinates, elementType)
-					aIntGeoEle << hGeoElement
-
-				# GeoJSON Geometry Collection
-				when 'GeometryCollection'
-					if hGeoJsonElement.has_key?('geometries')
-						aGeometries = hGeoJsonElement['geometries']
-						unless aGeometries.empty?
-							intGeometry = intMetadataClass.newGeometry
-							intGeometry[:geoType] = 'MultiGeometry'
-							intGeometry[:geometry] = Md_GeographicElement.unpack(aGeometries)
-							hGeoElement[:elementGeometry] = intGeometry
-							aIntGeoEle << hGeoElement
-						end
-					end
-
-			end
-
-		end
-
-		return aIntGeoEle
-
-	end
-
-end

data/lib/adiwg/mdtranslator/readers/mdJson/modules_0.9.0/module_legalConstraint.rb

@@ -1,45 +0,0 @@
-# unpack legal constraint
-# Reader - ADIwg JSON V1 to internal data structure
-
-# History:
-# 	Stan Smith 2013-11-14 original script
-# 	Stan Smith 2013-11-27 modified to process a single legal constraint
-#   Stan Smith 2014-04-28 modified attribute names to match json schema 0.3.0
-
-module Md_LegalConstraints
-
-	def self.unpack(hLegalCon)
-
-		# instance classes needed in script
-		intMetadataClass = InternalMetadata.new
-		hIntCon = intMetadataClass.newLegalConstraint
-
-		# legal constraint - access code
-		if hLegalCon.has_key?('accessConstraint')
-			aAccCodes = hLegalCon['accessConstraint']
-			unless aAccCodes.empty?
-				hIntCon[:accessCodes] = aAccCodes
-			end
-		end
-
-		# legal constraint - use code
-		if hLegalCon.has_key?('useConstraint')
-			aUseCodes = hLegalCon['useConstraint']
-			unless aUseCodes.empty?
-				hIntCon[:useCodes] = aUseCodes
-			end
-		end
-
-		# legal constraint - other constraints
-		if hLegalCon.has_key?('otherConstraint')
-			aOtherCons = hLegalCon['otherConstraint']
-			unless aOtherCons.empty?
-				hIntCon[:otherCons] = aOtherCons
-			end
-		end
-
-		return hIntCon
-
-	end
-
-end

data/lib/adiwg/mdtranslator/readers/mdJson/modules_0.9.0/module_lineString.rb

@@ -1,25 +0,0 @@
-# unpack line string
-# line string is coded in GeoJSON
-# Reader - ADIwg JSON V1 to internal data structure
-
-# History:
-# 	Stan Smith 2013-11-13 original script
-#   Stan Smith 2014-04-30 reorganized for json schema 0.3.0
-#   Stan Smith 2014-07-07 resolve require statements using Mdtranslator.reader_module
-
-require ADIWG::Mdtranslator.reader_module('module_coordinates', $response[:readerVersionUsed])
-
-module Md_LineString
-
-	def self.unpack(aCoords, geoType)
-		intMetadataClass = InternalMetadata.new
-		intLine = intMetadataClass.newGeometry
-
-		intLine[:geoType] = geoType
-		intLine[:geometry] = aCoords
-		intLine[:dimension] = Md_Coordinates.getDimension(aCoords)
-
-		return intLine
-	end
-
-end

data/lib/adiwg/mdtranslator/readers/mdJson/modules_0.9.0/module_lineage.rb

@@ -1,50 +0,0 @@
-# unpack lineage
-# Reader - ADIwg JSON V1 to internal data structure
-
-# History:
-# 	Stan Smith 2013-11-26 original script
-#   Stan Smith 2014-07-03 resolve require statements using Mdtranslator.reader_module
-
-require ADIWG::Mdtranslator.reader_module('module_processStep', $response[:readerVersionUsed])
-require ADIWG::Mdtranslator.reader_module('module_source', $response[:readerVersionUsed])
-
-module Md_Lineage
-
-	def self.unpack(hLineage)
-
-		# instance classes needed in script
-		intMetadataClass = InternalMetadata.new
-		intDataLine = intMetadataClass.newLineage
-
-		# lineage - statement
-		if hLineage.has_key?('statement')
-			s = hLineage['statement']
-			if s != ''
-				intDataLine[:statement] = s
-			end
-		end
-
-		# lineage - process steps
-		if hLineage.has_key?('processStep')
-			aProcSteps = hLineage['processStep']
-			unless aProcSteps.empty?
-				aProcSteps.each do |hProcStep|
-					intDataLine[:processSteps] << Md_ProcessStep.unpack(hProcStep)
-				end
-			end
-		end
-
-		# lineage - data sources
-		if hLineage.has_key?('source')
-			aSources = hLineage['source']
-			unless aSources.empty?
-				aSources.each do |hSource|
-					intDataLine[:dataSources] << Md_Source.unpack(hSource)
-				end
-			end
-		end
-
-		return intDataLine
-	end
-
-end

data/lib/adiwg/mdtranslator/readers/mdJson/modules_0.9.0/module_metadata.rb

@@ -1,77 +0,0 @@
-# unpack metadata
-# Reader - ADIwg JSON V1 to internal data structure
-
-# History:
-# 	Stan Smith 2013-08-22 original script
-#   Stan Smith 2013-09-23 added distributor info section
-#   Stan Smith 2013-11-26 added metadata maintenance section
-#   Stan Smith 2013-11-26 added hierarchy section
-#   Stan Smith 2013-11-26 added data quality section
-#   Stan Smith 2013-12-27 added parent identifier
-#   Stan Smith 2014-04-24 reorganized for json schema 0.3.0
-#   Stan Smith 2014-05-02 added associated resources
-#   Stan Smith 2014-05-02 added additional documentation
-#   Stan Smith 2014-07-03 resolve require statements using Mdtranslator.reader_module
-
-require ADIWG::Mdtranslator.reader_module('module_metadataInfo', $response[:readerVersionUsed])
-require ADIWG::Mdtranslator.reader_module('module_resourceInfo', $response[:readerVersionUsed])
-require ADIWG::Mdtranslator.reader_module('module_distributionInfo', $response[:readerVersionUsed])
-require ADIWG::Mdtranslator.reader_module('module_associatedResource', $response[:readerVersionUsed])
-require ADIWG::Mdtranslator.reader_module('module_additionalDocumentation', $response[:readerVersionUsed])
-require ADIWG::Mdtranslator.reader_module('module_citation', $response[:readerVersionUsed])
-
-module Md_Metadata
-
-	def self.unpack(hMetadata)
-
-		# instance classes needed in script
-		intMetadataClass = InternalMetadata.new
-		intMetadata = intMetadataClass.newMetadata
-
-		# metadata - metadataInfo
-		# metadataInfo needs access to resourceInfo to check taxonomy
-		if hMetadata.has_key?('metadataInfo')
-			intMetadata[:metadataInfo] = Md_MetadataInfo.unpack(hMetadata)
-		end
-
-		# metadata - resource identification info
-		if hMetadata.has_key?('resourceInfo')
-			hResourceInfo = hMetadata['resourceInfo']
-			intMetadata[:resourceInfo] = Md_ResourceInfo.unpack(hResourceInfo)
-		end
-
-		# metadata - distribution info
-		if hMetadata.has_key?('distributionInfo')
-			aDistributors = hMetadata['distributionInfo']
-			unless aDistributors.empty?
-				aDistributors.each do |hDistributor|
-					intMetadata[:distributorInfo] << Md_DistributionInfo.unpack(hDistributor)
-				end
-			end
-		end
-
-		# metadata - associated resources
-		if hMetadata.has_key?('associatedResource')
-			aAssocRes = hMetadata['associatedResource']
-			unless aAssocRes.empty?
-				aAssocRes.each do |hAssocRes|
-					intMetadata[:associatedResources] << Md_AssociatedResource.unpack(hAssocRes)
-				end
-			end
-		end
-
-		# metadata - additional documents
-		if hMetadata.has_key?('additionalDocumentation')
-			aAddDocs = hMetadata['additionalDocumentation']
-			unless aAddDocs.empty?
-				aAddDocs.each do |hAddDoc|
-					intMetadata[:additionalDocuments] << Md_AdditionalDocumentation.unpack(hAddDoc)
-				end
-			end
-		end
-
-		return intMetadata
-
-	end
-
-end

data/lib/adiwg/mdtranslator/readers/mdJson/modules_0.9.0/module_metadataExtension.rb

@@ -1,40 +0,0 @@
-# unpack metadata extension information
-# Reader - ADIwg JSON V1 to internal data structure
-
-# History:
-# 	Stan Smith 2013-11-22 original script
-#   Stan Smith 2014-05-15 modified for JSON schema 0.4.0
-
-module Md_MetadataExtension
-
-	def self.addExtensionISObio()
-
-		intMetadataClass = InternalMetadata.new
-		intMetaExt = intMetadataClass.newMetadataExtension
-		intContactRole = intMetadataClass.newRespParty
-
-		# extension online information
-		intMetaExt[:onLineResource] = {}
-
-		# extension entity information
-		intMetaExt[:extName] = 'Taxonomy System'
-		intMetaExt[:extShortName] = 'TaxonSys'
-		intMetaExt[:extDefinition] = 'Documentation of taxonomic sources, procedures, and treatments'
-		intMetaExt[:obligation] = 'optional'
-		intMetaExt[:dataType] = 'class'
-		intMetaExt[:maxOccurrence] = '1'
-		intMetaExt[:parentEntities] << 'MD_Identification'
-		intMetaExt[:rule] = 'New Metadata section as a class to MD_Identification'
-		intMetaExt[:rationales] << 'The set of data elements contained within this class element ' +
-			'represents an attempt to provide better documentation of ' +
-			'taxonomic sources, procedures, and treatments.'
-
-		# source information
-		intContactRole[:contactId] = 'ADIwgBio'
-		intContactRole[:roleName] = 'resourceProvider'
-		intMetaExt[:extSources] << intContactRole
-
-		return intMetaExt
-	end
-
-end

data/lib/adiwg/mdtranslator/readers/mdJson/modules_0.9.0/module_metadataInfo.rb

@@ -1,112 +0,0 @@
-# unpack metadata information block
-# Reader - ADIwg JSON V1 to internal data structure
-
-# History:
-# 	Stan Smith 2014-04-24 original script - moved from module_metadata
-#   Stan Smith 2014-07-03 resolve require statements using Mdtranslator.reader_module
-#   Stan Smith 2014-09-19 changed metadata identifier type resource identifier json 0.8.0
-#   Stan Smith 2014-09-19 changed parent metadata identifier type citation json 0.8.0
-#   Stan Smith 2014-11-06 removed metadataScope, moved to resourceType under resourceInfo json 0.9.0
-
-require ADIWG::Mdtranslator.reader_module('module_responsibleParty', $response[:readerVersionUsed])
-require ADIWG::Mdtranslator.reader_module('module_dateTime', $response[:readerVersionUsed])
-require ADIWG::Mdtranslator.reader_module('module_resourceMaintenance', $response[:readerVersionUsed])
-require ADIWG::Mdtranslator.reader_module('module_metadataExtension', $response[:readerVersionUsed])
-require ADIWG::Mdtranslator.reader_module('module_resourceIdentifier', $response[:readerVersionUsed])
-require ADIWG::Mdtranslator.reader_module('module_citation', $response[:readerVersionUsed])
-
-module Md_MetadataInfo
-
-	def self.unpack(hMetadata)
-
-		# instance classes needed in script
-		intMetadataClass = InternalMetadata.new
-		intMetadataInfo = intMetadataClass.newMetadataInfo
-		hMetadataInfo = hMetadata['metadataInfo']
-
-		# metadata - metadata identifier
-		if hMetadataInfo.has_key?('metadataIdentifier')
-			hMetadataId = hMetadataInfo['metadataIdentifier']
-			unless hMetadataId.empty?
-				intMetadataInfo[:metadataId] = Md_ResourceIdentifier.unpack(hMetadataId)
-			end
-		end
-
-		# metadata - parent metadata identifier
-		if hMetadataInfo.has_key?('parentMetadata')
-			hParent = hMetadataInfo['parentMetadata']
-			unless hParent.empty?
-				intMetadataInfo[:parentMetadata] = Md_Citation.unpack(hParent)
-			end
-		end
-
-		# metadata - metadata contacts, custodians
-		if hMetadataInfo.has_key?('metadataContact')
-			aCust = hMetadataInfo['metadataContact']
-			unless aCust.empty?
-				aCust.each do |rParty|
-					intMetadataInfo[:metadataCustodians] << Md_ResponsibleParty.unpack(rParty)
-				end
-			end
-		end
-
-		# metadata - creation date
-		if hMetadataInfo.has_key?('metadataCreationDate')
-			s = hMetadataInfo['metadataCreationDate']
-			if s != ''
-				hDateTime = Md_DateTime.unpack(s)
-				hDateTime[:dateType] = 'publication'
-				intMetadataInfo[:metadataCreateDate] = hDateTime
-			end
-		end
-
-		# metadata - date of last metadata update
-		if hMetadataInfo.has_key?('metadataLastUpdate')
-			s = hMetadataInfo['metadataLastUpdate']
-			if s != ''
-				hDateTime = Md_DateTime.unpack(s)
-				hDateTime[:dateType] = 'revision'
-				intMetadataInfo[:metadataUpdateDate] = hDateTime
-			end
-		end
-
-		# metadata - metadata URI
-		if hMetadataInfo.has_key?('metadataUri')
-			s = hMetadataInfo['metadataUri']
-			if s != ''
-				intMetadataInfo[:metadataURI] = s
-			end
-		end
-
-		# metadata - status
-		if hMetadataInfo.has_key?('metadataStatus')
-			s = hMetadataInfo['metadataStatus']
-			if s != ''
-				intMetadataInfo[:metadataStatus] = s
-			end
-		end
-
-		# metadata - metadata maintenance info
-		if hMetadataInfo.has_key?('metadataMaintenance')
-			hMetaMaint = hMetadataInfo['metadataMaintenance']
-			unless hMetaMaint.empty?
-				intMetadataInfo[:maintInfo] = Md_ResourceMaintenance.unpack(hMetaMaint)
-			end
-		end
-
-		# metadata - extension info - if biological extension
-		if hMetadata.has_key?('resourceInfo')
-		resourceInfo = hMetadata['resourceInfo']
-			if resourceInfo.has_key?('taxonomy')
-				hTaxonomy = resourceInfo['taxonomy']
-				unless hTaxonomy.empty?
-					intMetadataInfo[:extensions] << Md_MetadataExtension.addExtensionISObio
-				end
-			end
-		end
-
-		return intMetadataInfo
-
-	end
-
-end