aai 0.5.2 → 0.5.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/exe/aai +16 -9
- data/lib/aai.rb +1 -2
- data/lib/aai/version.rb +1 -1
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
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SHA1:
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3
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metadata.gz:
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4
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data.tar.gz:
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3
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metadata.gz: b586d37bb48f611b4e9340171db7924a065dc613
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4
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data.tar.gz: a3aa577a3688fbbca2b45487c8ec467b6238c2d1
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SHA512:
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metadata.gz:
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data.tar.gz:
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6
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metadata.gz: ee7bc5696839c7c727d4062b8fe3cc9f4c25c47727d80221694f34fe3ea23764e407f1c8e1f33098190d766dc1aa06201a99a3152b83ae4ec0c974d800e0dd09
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7
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data.tar.gz: 24a5566d3eeb9c5df9a4958e2d350d448c63a34d7e93f8ff9f1ab061fecbda2eff9ee41b40f69c19aa6313e63aac4d00694ab510d45dc6732eab12d6da26089b
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data/exe/aai
CHANGED
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@@ -102,23 +102,30 @@ Time.time_it "Writing score file", AbortIf.logger do
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FileUtils.mkdir_p score_dir
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outf = File.join score_dir, "#{opts[:basename]}.aai.txt"
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File.open(outf, "w") do |f|
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f.puts %w[genome_A genome_B A_to_B_aai B_to_A_aai two_way_aai].
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join "\t"
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Aai.aai_strings(one_way, two_way).each do |str|
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f.puts str
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end
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end
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end
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-
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Time.time_it "Cleaning up", AbortIf.logger do
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blast_db_dir = File.join opts[:outdir], "blastdbs"
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btab_dir = File.join opts[:outdir], "btabs"
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clean_fasta_dir = File.join opts[:outdir], "clean_fastas"
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btab_dir = File.join opts[:outdir], "btabs"
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clean_fasta_dir = File.join opts[:outdir], "clean_fastas"
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FileUtils.mkdir_p [blast_db_dir, btab_dir, clean_fasta_dir]
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AbortIf.logger.debug { "Moving clean fastas" }
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move_files clean_fnames, clean_fasta_dir
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move_files btabs, btab_dir
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AbortIf.logger.debug { "Moving btabs" }
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move_files btabs, btab_dir
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AbortIf.logger.debug { "Moving blast dbs" }
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blast_db_basenames.each do |basename|
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move_files Dir.glob("#{basename}*"), blast_db_dir
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end
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end
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data/lib/aai.rb
CHANGED
data/lib/aai/version.rb
CHANGED