SilkSlider 0.2.0 → 0.2.1
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- checksums.yaml +4 -4
- data/VERSION +1 -1
- data/bin/silk_slider +9 -2
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 1216ff0f3bc361d27868bcb7663213c1dc32cf4c
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4
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+
data.tar.gz: 6893e3334b1c17bc4a66cc740420955f1c7b78f8
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: b9d2c0105bb463354a00b463722558b2f3081d59a1f2305ab17722efec2a749f1ed0e66478ecb05093bb8af578ad6c81413944f9584c35ac29c3cad7dbe5c6bf
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7
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+
data.tar.gz: 3356e40a50ca27ccb8393ca944d0e93b12428c25c2aeeb1ed62faaec7aa75a20d76a13c56f05054a4c58b1bb98a90b0a0e315d4a00176f502b722ab05e005abb
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data/VERSION
CHANGED
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@@ -1 +1 @@
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1
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-
0.2.
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1
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+
0.2.1
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data/bin/silk_slider
CHANGED
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@@ -68,11 +68,18 @@ Bio::FlatFile.open(Bio::FastaFormat, ARGF).each do |seq|
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68
68
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if example_result.nil?
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69
69
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example_result = signalp_result
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70
70
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log.info "Using SignalP version: #{example_result.class}" if log.info?
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71
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+
if !example_result.kind_of?(Bio::SignalP::Version3::Result)
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72
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+
log.warn "================================================================================"
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73
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+
log.warn "SilkSlider is intended for use with SignalP version 3, where a different version is being used here."
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74
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+
log.warn "Your results may vary...."
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75
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+
log.warn "To specify a particular signalp binary to be used, use the --signalp-binary flag"
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76
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+
log.warn "================================================================================"
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77
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+
end
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71
78
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end
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72
79
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num_considered += 1
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73
80
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74
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-
log.debug "Sequence #{seq.definition} predicted by SignalP? #{signalp_result.
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75
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-
if signalp_result.
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81
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+
log.debug "Sequence #{seq.definition} predicted by SignalP? #{signalp_result.signal?}" if log.debug?
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82
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+
if signalp_result.signal?
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76
83
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sequence_without_signal_peptide = signalp_result.cleave(seq.seq)
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77
84
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78
85
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tmhmm_protein = tmhmm_runner.calculate sequence_without_signal_peptide
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metadata
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: SilkSlider
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3
3
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version: !ruby/object:Gem::Version
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4
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-
version: 0.2.
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4
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+
version: 0.2.1
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5
5
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platform: ruby
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6
6
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authors:
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7
7
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- Carmel McDougall
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@@ -10,7 +10,7 @@ authors:
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10
10
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autorequire:
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11
11
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bindir: bin
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12
12
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cert_chain: []
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13
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-
date: 2014-07-
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|
13
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+
date: 2014-07-16 00:00:00.000000000 Z
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14
14
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dependencies:
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15
15
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- !ruby/object:Gem::Dependency
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16
16
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name: bio-signalp
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