SilkSlider 0.2.0 → 0.2.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/VERSION +1 -1
- data/bin/silk_slider +9 -2
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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SHA1:
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-
metadata.gz:
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data.tar.gz:
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3
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metadata.gz: 1216ff0f3bc361d27868bcb7663213c1dc32cf4c
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4
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data.tar.gz: 6893e3334b1c17bc4a66cc740420955f1c7b78f8
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: b9d2c0105bb463354a00b463722558b2f3081d59a1f2305ab17722efec2a749f1ed0e66478ecb05093bb8af578ad6c81413944f9584c35ac29c3cad7dbe5c6bf
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7
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data.tar.gz: 3356e40a50ca27ccb8393ca944d0e93b12428c25c2aeeb1ed62faaec7aa75a20d76a13c56f05054a4c58b1bb98a90b0a0e315d4a00176f502b722ab05e005abb
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data/VERSION
CHANGED
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@@ -1 +1 @@
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1
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-
0.2.
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1
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0.2.1
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data/bin/silk_slider
CHANGED
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@@ -68,11 +68,18 @@ Bio::FlatFile.open(Bio::FastaFormat, ARGF).each do |seq|
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if example_result.nil?
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example_result = signalp_result
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log.info "Using SignalP version: #{example_result.class}" if log.info?
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if !example_result.kind_of?(Bio::SignalP::Version3::Result)
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log.warn "================================================================================"
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log.warn "SilkSlider is intended for use with SignalP version 3, where a different version is being used here."
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log.warn "Your results may vary...."
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log.warn "To specify a particular signalp binary to be used, use the --signalp-binary flag"
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log.warn "================================================================================"
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end
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end
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num_considered += 1
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log.debug "Sequence #{seq.definition} predicted by SignalP? #{signalp_result.
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if signalp_result.
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log.debug "Sequence #{seq.definition} predicted by SignalP? #{signalp_result.signal?}" if log.debug?
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if signalp_result.signal?
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sequence_without_signal_peptide = signalp_result.cleave(seq.seq)
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tmhmm_protein = tmhmm_runner.calculate sequence_without_signal_peptide
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metadata
CHANGED
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@@ -1,7 +1,7 @@
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--- !ruby/object:Gem::Specification
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name: SilkSlider
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version: !ruby/object:Gem::Version
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version: 0.2.
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version: 0.2.1
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platform: ruby
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authors:
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- Carmel McDougall
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@@ -10,7 +10,7 @@ authors:
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autorequire:
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bindir: bin
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cert_chain: []
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-
date: 2014-07-
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date: 2014-07-16 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bio-signalp
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