NetAnalyzer 0.1.5 → 0.6.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +5 -5
- data/.rspec +1 -0
- data/Gemfile +4 -0
- data/NetAnalyzer.gemspec +16 -6
- data/README.md +16 -2
- data/Rakefile +13 -9
- data/bin/NetAnalyzer.rb +176 -33
- data/bin/randomize_clustering.rb +121 -0
- data/bin/randomize_network.rb +89 -0
- data/bin/ranker_gene.rb +121 -0
- data/bin/text2binary_matrix.rb +308 -0
- data/lib/NetAnalyzer/adv_mat_calc.rb +117 -0
- data/lib/NetAnalyzer/net_parser.rb +50 -0
- data/lib/NetAnalyzer/net_plotter.rb +145 -0
- data/lib/NetAnalyzer/network.rb +723 -249
- data/lib/NetAnalyzer/nodes.rb +15 -0
- data/lib/NetAnalyzer/performancer.rb +98 -0
- data/lib/NetAnalyzer/ranker.rb +250 -0
- data/lib/NetAnalyzer/templates/ElGrapho.min.js +28 -0
- data/lib/NetAnalyzer/templates/cytoscape.erb +65 -0
- data/lib/NetAnalyzer/templates/cytoscape.min.js +32 -0
- data/lib/NetAnalyzer/templates/el_grapho.erb +89 -0
- data/lib/NetAnalyzer/templates/pako.min.js +1 -0
- data/lib/NetAnalyzer/templates/sigma.erb +132 -0
- data/lib/NetAnalyzer/version.rb +1 -1
- data/lib/NetAnalyzer.rb +7 -0
- metadata +187 -29
metadata
CHANGED
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@@ -1,59 +1,171 @@
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1
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--- !ruby/object:Gem::Specification
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name: NetAnalyzer
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version: !ruby/object:Gem::Version
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-
version: 0.
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+
version: 0.6.3
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platform: ruby
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authors:
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- Elena Rojano, Pedro Seoane
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autorequire:
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autorequire:
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bindir: bin
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cert_chain: []
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-
date:
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date: 2025-09-02 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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-
name:
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name: rake
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requirement: !ruby/object:Gem::Requirement
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requirements:
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-
- - "
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+
- - ">="
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- !ruby/object:Gem::Version
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version:
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version: 13.0.3
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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-
- - "
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- - ">="
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- !ruby/object:Gem::Version
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version:
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version: 13.0.3
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- !ruby/object:Gem::Dependency
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name:
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name: rspec
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - "
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- - ">="
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- !ruby/object:Gem::Version
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version: '
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version: '0'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - "
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- - ">="
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- !ruby/object:Gem::Version
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version: '
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version: '0'
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- !ruby/object:Gem::Dependency
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name:
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name: minitest
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - "
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- - ">="
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- !ruby/object:Gem::Version
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version: '
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version: '0'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - "
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- - ">="
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- !ruby/object:Gem::Version
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version: '0'
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- !ruby/object:Gem::Dependency
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name: cmath
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: 1.0.0
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: 1.0.0
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- !ruby/object:Gem::Dependency
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name: numo-linalg
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: 0.1.5
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: 0.1.5
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- !ruby/object:Gem::Dependency
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name: numo-narray
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: 0.9.1.9
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: 0.9.1.9
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- !ruby/object:Gem::Dependency
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name: pp
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: 0.1.0
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: 0.1.0
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- !ruby/object:Gem::Dependency
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name: npy
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: 0.2.0
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version:
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version: 0.2.0
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- !ruby/object:Gem::Dependency
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name:
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name: bigdecimal
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: 3.0.0
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: 3.0.0
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- !ruby/object:Gem::Dependency
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name: gv
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: 0.1.0
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: 0.1.0
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- !ruby/object:Gem::Dependency
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name: semtools
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: 0.1.1
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: 0.1.1
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- !ruby/object:Gem::Dependency
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name: expcalc
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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@@ -67,7 +179,35 @@ dependencies:
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- !ruby/object:Gem::Version
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version: '0'
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name:
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name: parallel
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: '0'
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: '0'
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- !ruby/object:Gem::Dependency
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name: rubystats
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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version: '0'
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: '0'
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- !ruby/object:Gem::Dependency
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name: red-colors
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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@@ -80,17 +220,21 @@ dependencies:
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- - ">="
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version: '0'
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description:
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the results
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description: 'DEPRECATED PROJECT. MIGRATED TO PYTHON: https://github.com/seoanezonjic/NetAnalyzer.
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NetAnalyzer is a useful network analysis tool developed in Ruby that can 1) analyse
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any type of unweighted network, regardless of the number of layers, 2) calculate
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the relationship between different layers, using various association indices (Jaccard,
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Simpson, PCC, geometric, cosine and hypergeometric) and 3) validate the results'
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email:
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- elenarojano@uma.es, seoanezonjic@hotmail.com
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executables:
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- NetAnalyzer.rb
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- console
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- randomize_clustering.rb
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- randomize_network.rb
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- ranker_gene.rb
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- setup
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- text2binary_matrix.rb
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extensions: []
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extra_rdoc_files: []
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files:
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@@ -104,10 +248,25 @@ files:
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- Rakefile
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- bin/NetAnalyzer.rb
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- bin/console
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- bin/randomize_clustering.rb
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- bin/randomize_network.rb
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- bin/ranker_gene.rb
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- bin/setup
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- bin/text2binary_matrix.rb
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- lib/NetAnalyzer.rb
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- lib/NetAnalyzer/adv_mat_calc.rb
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- lib/NetAnalyzer/net_parser.rb
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- lib/NetAnalyzer/net_plotter.rb
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- lib/NetAnalyzer/network.rb
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- lib/NetAnalyzer/nodes.rb
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- lib/NetAnalyzer/performancer.rb
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- lib/NetAnalyzer/ranker.rb
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- lib/NetAnalyzer/templates/ElGrapho.min.js
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- lib/NetAnalyzer/templates/cytoscape.erb
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- lib/NetAnalyzer/templates/cytoscape.min.js
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- lib/NetAnalyzer/templates/el_grapho.erb
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- lib/NetAnalyzer/templates/pako.min.js
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- lib/NetAnalyzer/templates/sigma.erb
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- lib/NetAnalyzer/version.rb
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- old_spec/NetAnalyzer_spec.rb
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- old_spec/spec_helper.rb
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@@ -115,7 +274,7 @@ homepage: https://github.com/ElenaRojano/NetAnalyzer
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licenses:
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- MIT
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metadata: {}
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post_install_message:
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post_install_message:
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rdoc_options: []
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require_paths:
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- lib
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@@ -130,9 +289,8 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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- !ruby/object:Gem::Version
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version: '0'
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requirements: []
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signing_key:
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rubygems_version: 3.3.7
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signing_key:
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specification_version: 4
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summary: Network analysis tool that calculate and validate different association indices.
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test_files: []
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