MSAbundanceSim 0.3.0 → 0.4.0
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- checksums.yaml +4 -4
- data/lib/ms_abundance_sim.rb +5 -5
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 43c27737444a0c3002974102bd4a03fa58d9cd25
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4
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+
data.tar.gz: dbf3f5d8b4dd3f2cee1242f78cead2c22f372b27
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 7161e89f7b6d8ec3faf8c58430b08c8bf55335895d948391e81a7f25bf82dac69e29348e9f2a018f0e5b5035707ca0c13cfb864aad288ca9eb96f2b35414912a
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7
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+
data.tar.gz: 0e73101e9a0ec98a810cca9101d50a41313f62e0dee833b9132d90a90b741be65d7e9ebeb727e1d83759048762a5017dad690cc55b6795e5438045bebd2cfa9e
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data/lib/ms_abundance_sim.rb
CHANGED
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@@ -9,7 +9,7 @@ require 'set'
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9
9
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require 'yaml'
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10
10
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11
11
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class MSAbundanceSim
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12
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-
VERSION = "0.
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12
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+
VERSION = "0.4.0"
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13
13
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end
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14
14
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15
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ProteinEntry = Struct.new(:entry_line_wo_abundance, :abundances, :additional_lines) do
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@@ -68,12 +68,12 @@ class MSAbundanceSim
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68
68
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end
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69
69
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70
70
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def get_fold_change(a_i, event_rate, max_abundance)
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71
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-
# max fold change at lowest abundance
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72
71
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raw_fc = inverse_transform_sample(event_rate)
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73
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-
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74
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-
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72
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+
inv_share = (1.0-(a_i[0].to_f / max_abundance))
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73
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+
norm_fc = raw_fc * inv_share
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74
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trans = rand(0..inv_share)
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75
75
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sign = [1,-1].sample
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76
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-
return
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76
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+
return (norm_fc + trans) * sign
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77
77
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end
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78
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# takes 'value' and subtracts rand(min_threshold..value) from it if
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: MSAbundanceSim
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3
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version: !ruby/object:Gem::Version
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4
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-
version: 0.
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4
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+
version: 0.4.0
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5
5
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platform: ruby
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6
6
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authors:
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7
7
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- Rob Smith, John T. Prince
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8
8
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autorequire:
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9
9
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bindir: exe
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10
10
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cert_chain: []
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11
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-
date: 2017-05-
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11
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+
date: 2017-05-24 00:00:00.000000000 Z
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12
12
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dependencies:
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13
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- !ruby/object:Gem::Dependency
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14
14
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name: bundler
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