COEUS 0.0.4 → 0.0.5

checksums.yaml

@@ -1,7 +1,7 @@
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data/coeus.gemspec

@@ -7,7 +7,7 @@ Gem::Specification.new do |spec|
   spec.name          = "COEUS"
   spec.version       = COEUS::VERSION
   spec.authors       = ["Pedro Lopes"]
-  spec.email         = ["hello@pedrolopes.net"]
+  spec.email         = ["pedrolopes@ua.pt"]
   spec.description   = %q{COEUS: semantic web application framework}
   spec.summary       = %q{This. Is. Semantic.}
   spec.homepage      = "http://bioinformatics.ua.pt/coeus/"

data/lib/coeus.rb

@@ -4,11 +4,28 @@ require "json"
 require "rdf"
 require "sparql"
 
+##
+# = COEUS
+#
+# Main COEUS gem module
 module COEUS
   class COEUS
+  	# COEUS base host URL
   	@host = 'http://bioinformatics.ua.pt/coeus/'
+
+  	# COEUS API key
   	@key = 'uavr'
 
+  	## 
+  	# This method defines the base COEUS host for the next actions
+  	#
+  	# ==== Parameters
+  	#
+  	# * +host+ - the new host settings
+  	#
+  	# ==== Default
+  	# * http://bioinformatics.ua.pt/coeus/
+  	# 
   	def self.host(host)
   		if host.start_with?('http')
   			@host = host
@@ -21,20 +38,47 @@ module COEUS
   		puts @host
   	end
 
+  	## 
+  	# This method defines the COEUS seed API key
+  	#
+  	# ==== Parameters
+  	#
+  	# * +key+ - the COEUS API key
+  	#
+  	# ==== Default
+  	# * uavr
+  	# 
   	def self.key(key)
   		@key = key
   	end
 
+  	## 
+  	# This method uses COEUS API to get match triples based on provided parameters
+  	#
+  	# ==== Parameters
+  	#
+  	# * +sub+ - the triple set subject
+  	# * +pred+ - the triple set predicate
+  	# * +obj+ - the triple set object
+  	#
+  	# ==== Default
+  	# * http://bioinformatics.ua.pt/coeus/
+  	# 
   	def self.triple(sub, pred, obj)
   		content = URI.parse(@host + 'api/triple/' + sub + '/' + pred + '/' + obj + '/js').read
   		return JSON.parse(content)['results']['bindings']
   	end
 
+
+  	## 
+  	# This method performs a SPARQL query on the COEUS endpoint
+  	#
+  	# ==== Parameters
+  	#
+  	# * +query+ - the complete SPARQL query (including prefixes)
+  	# 
   	def self.query(query)
   		sparql = SPARQL::Client.new(@host + 'sparql')
-  		#queryable = RDF::Repository.load(@host + 'sparql')
-  		#solutions = SPARQL.execute(query, sparql)
-  		#return solutions.to_json
   		return sparql.query(query)
   	end
   end

data/lib/coeus/version.rb

@@ -1,3 +1,4 @@
 module COEUS
-  VERSION = "0.0.4"
+	# COEUS gem version info
+	VERSION = "0.0.5"
 end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: COEUS
 version: !ruby/object:Gem::Version
-  version: 0.0.4
+  version: 0.0.5
 platform: ruby
 authors:
 - Pedro Lopes
@@ -82,14 +82,12 @@ dependencies:
         version: '0'
 description: 'COEUS: semantic web application framework'
 email:
-- hello@pedrolopes.net
+- pedrolopes@ua.pt
 executables: []
 extensions: []
 extra_rdoc_files: []
 files:
 - Gemfile
-- LICENSE
-- LICENSE.txt
 - README.md
 - Rakefile
 - coeus.gemspec

data/LICENSE

@@ -1,20 +0,0 @@
-The MIT License (MIT)
-
-Copyright (c) 2013 Pedro Lopes
-
-Permission is hereby granted, free of charge, to any person obtaining a copy of
-this software and associated documentation files (the "Software"), to deal in
-the Software without restriction, including without limitation the rights to
-use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of
-the Software, and to permit persons to whom the Software is furnished to do so,
-subject to the following conditions:
-
-The above copyright notice and this permission notice shall be included in all
-copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS
-FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR
-COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER
-IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
-CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

data/LICENSE.txt

@@ -1,22 +0,0 @@
-Copyright (c) 2013 Pedro Lopes
-
-MIT License
-
-Permission is hereby granted, free of charge, to any person obtaining
-a copy of this software and associated documentation files (the
-"Software"), to deal in the Software without restriction, including
-without limitation the rights to use, copy, modify, merge, publish,
-distribute, sublicense, and/or sell copies of the Software, and to
-permit persons to whom the Software is furnished to do so, subject to
-the following conditions:
-
-The above copyright notice and this permission notice shall be
-included in all copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
-EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
-MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
-NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
-LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
-OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
-WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.