yalip 0.9.0__tar.gz
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- yalip-0.9.0/LICENSE +21 -0
- yalip-0.9.0/PKG-INFO +162 -0
- yalip-0.9.0/README.md +143 -0
- yalip-0.9.0/pyproject.toml +31 -0
- yalip-0.9.0/setup.cfg +4 -0
- yalip-0.9.0/src/yalip/__init__.py +22 -0
- yalip-0.9.0/src/yalip/ameli.py +400 -0
- yalip-0.9.0/src/yalip/fits.py +415 -0
- yalip-0.9.0/src/yalip/lanthanide.py +128 -0
- yalip-0.9.0/src/yalip/levels.py +251 -0
- yalip-0.9.0/src/yalip/matrix.py +188 -0
- yalip-0.9.0/src/yalip/spectrum.py +195 -0
- yalip-0.9.0/src/yalip/states.py +441 -0
- yalip-0.9.0/src/yalip.egg-info/PKG-INFO +162 -0
- yalip-0.9.0/src/yalip.egg-info/SOURCES.txt +16 -0
- yalip-0.9.0/src/yalip.egg-info/dependency_links.txt +1 -0
- yalip-0.9.0/src/yalip.egg-info/requires.txt +5 -0
- yalip-0.9.0/src/yalip.egg-info/top_level.txt +1 -0
yalip-0.9.0/LICENSE
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MIT License
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Copyright (c) 2024-2025 Reinhard Caspary <r.caspary@posteo.de>
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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The above copyright notice and this permission notice shall be included in all
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copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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SOFTWARE.
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yalip-0.9.0/PKG-INFO
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Metadata-Version: 2.4
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Name: yalip
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Version: 0.9.0
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Summary: Python 3 package to calculate the energy levels of lanthanide ions.
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Author-email: Reinhard Caspary <reinhard.caspary@phoenixd.uni-hannover.de>
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Classifier: Development Status :: 3 - Alpha
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Classifier: Programming Language :: Python :: 3
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Classifier: License :: OSI Approved :: MIT License
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Classifier: Operating System :: OS Independent
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Requires-Python: >=3.8
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Description-Content-Type: text/markdown
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License-File: LICENSE
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Requires-Dist: numpy>=2.4.0
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Requires-Dist: scipy>=1.17.0
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Requires-Dist: h5py>=3.16.0
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Requires-Dist: requests>=2.34.0
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Requires-Dist: platformdirs>=4.9.0
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Dynamic: license-file
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# YALIP 0.9.0 (Yet Another Lanthanide Ion Package)
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This is a Python 3 package to calculate the energy levels of multi-electron
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systems populating the 4f configuration, which means the lanthanide or
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rare-earth ions from Ce<sup>3+</sup> (4f<sup>1</sup>) to Yb<sup>3+</sup>
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(4f<sup>13</sup>).
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The calculation is based on Racah's tensor algebra using an approach
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introduced in my PhD thesis [[1]](#ref1) and advanced in [[2]](#ref2).
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You find a copy of the [thesis](private/Dissertation.pdf) and
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[corrections](private/errata5.pdf) in the folder `docs`.
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The original version of the software is available in the GitHub repository
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[Lanthanide-0.3](https://github.com/reincas/Lanthanide-0.3) and the last
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implementation of the original approach in the repository
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[Lanthanide](https://github.com/reincas/Lanthanide).
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However, instead of computing its numerical operator matrices, the YALIP package
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is using the matrix elements from the Zenodo repository
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[AMELI](https://zenodo.org/communities/ameli) calculated and stored in exact
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arithmetic according to [[2]](#ref2).
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## Installation
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The package is available on PyPI and the installation therefore is possible using `pip`
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```
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pip install yalip
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```
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## Usage
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The YALIP package is designed for three use cases on different abstraction levels.
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### 1. Class `States`
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Access to raw numerical representations of states and
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[operator matrices](docs/operators.md) from the AMELI repository is provided by
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the [class `States`](docs/states.md).
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The following code initialises all basis states of the Pr<sup>3+</sup> ion in $SLJ$
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coupling:
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```
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from yalip import States, Coupling
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config = "f2"
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coupling = Coupling.SLJ
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states = States(config, coupling)
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```
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### 2. Class `Levels`
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Calculation of states in intermediate coupling, their energy levels and radiative
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transitions based on given radial integrals and Judd-Ofelt parameters is provided
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by the [class `Levels`](docs/levels.md).
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Typical initialisation code for a Pr<sup>3+</sup> ion looks like:
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```
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from yalip import Cauchy, Coupling, Levels
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config = "f2"
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coupling = Coupling.SLJ
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radial = {"base": 327.39, "H1/2": 68576.05, "H1/4": 49972.76, "H1/6": 32415.29, "H2": 728.18,
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"H3/0": 16.99, "H3/1": -417.98, "H3/2": 1371, "H5fix": 0.19, "H6fix": 1.67}
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jo = {"JO/2": 1.981, "JO/4": 4.645, "JO/6": 6.972}
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material = Cauchy(1.35123e-5, 2.94780e-3, 1.49985, -1.30933e-3, -3.23335e-6)
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ion = Levels(config, coupling, radial, jo, material)
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```
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### 3. Class `Fits`
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The [class `Fits`](docs/fits.md) is used to perform energy level and Judd-Ofelt
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fits to determine optimised radial integrals and Judd-Ofelt parameters matching
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a measured absorption spectrum.
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Typical initialisation code for a Pr<sup>3+</sup> ion looks like:
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```
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from yalip import Cauchy, Coupling, Fits
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config = "f2"
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coupling = Coupling.SLJ
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radial = {"base": 327.39, "H1/2": 68576.05, "H1/4": 49972.76, "H1/6": 32415.29, "H2": 728.18,
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"H3/0": 16.99, "H3/1": -417.98, "H3/2": 1371, "H5fix": 0.19, "H6fix": 1.67}
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material = Cauchy(1.35123e-5, 2.94780e-3, 1.49985, -1.30933e-3, -3.23335e-6)
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opt = Fits(config, coupling, radial, material)
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```
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### Example Scripts
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Some application example scripts are available in the folder [run](run).
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## Logging
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The YALIP package uses the logger package for status messages.
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The following code example provides a basic setup to make these messages visible
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on the console:
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```
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import logging
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from yalip import Coupling, States
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logger = logging.getLogger("my_script")
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def init_logger(level=logging.INFO):
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root = logging.getLogger()
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root.setLevel(level)
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log_format = logging.Formatter("%(asctime)s - %(name)s - %(levelname)s - %(message)s")
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console_h = logging.StreamHandler()
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console_h.setFormatter(log_format)
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console_h.setLevel(level)
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root.addHandler(console_h)
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if __name__ == "__main__":
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init_logger(level=logging.DEBUG)
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config = "f2"
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coupling = Coupling.SLJ
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states = States(config, coupling)
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```
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## Caching
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The YALIP package uses `platformdirs.user_cache_dir()` to create a cache folder
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for files from the AMELI repository and another one for converted floating point
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matrices.
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YALIP regularly checks the repository for new versions, but at most twice a day.
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The decorator `functools.lru_cache` is used to keep numerical matrices in the
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memory.
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## License
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This is free software under the MIT License.
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## References
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<span id="ref1">[1]</span> Reinhard Caspary: "Applied Rare-Earth Spectroscopy for Fiber Laser Optimization", doctoral dissertation at
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Technische Universität Braunschweig, published with Shaker, Aachen, 2002
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<span id="ref2">[2]</span> Reinhard Caspary: "AMELI: Angular Matrix Elements of Lanthanide Ions", arXiv, 2026,
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https://doi.org/10.48550/arXiv.2603.21947
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yalip-0.9.0/README.md
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# YALIP 0.9.0 (Yet Another Lanthanide Ion Package)
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This is a Python 3 package to calculate the energy levels of multi-electron
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4
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+
systems populating the 4f configuration, which means the lanthanide or
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|
5
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+
rare-earth ions from Ce<sup>3+</sup> (4f<sup>1</sup>) to Yb<sup>3+</sup>
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(4f<sup>13</sup>).
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The calculation is based on Racah's tensor algebra using an approach
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introduced in my PhD thesis [[1]](#ref1) and advanced in [[2]](#ref2).
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You find a copy of the [thesis](private/Dissertation.pdf) and
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[corrections](private/errata5.pdf) in the folder `docs`.
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The original version of the software is available in the GitHub repository
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[Lanthanide-0.3](https://github.com/reincas/Lanthanide-0.3) and the last
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implementation of the original approach in the repository
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[Lanthanide](https://github.com/reincas/Lanthanide).
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However, instead of computing its numerical operator matrices, the YALIP package
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is using the matrix elements from the Zenodo repository
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[AMELI](https://zenodo.org/communities/ameli) calculated and stored in exact
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arithmetic according to [[2]](#ref2).
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## Installation
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The package is available on PyPI and the installation therefore is possible using `pip`
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```
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pip install yalip
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```
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## Usage
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The YALIP package is designed for three use cases on different abstraction levels.
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### 1. Class `States`
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Access to raw numerical representations of states and
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[operator matrices](docs/operators.md) from the AMELI repository is provided by
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the [class `States`](docs/states.md).
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The following code initialises all basis states of the Pr<sup>3+</sup> ion in $SLJ$
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coupling:
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```
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from yalip import States, Coupling
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config = "f2"
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coupling = Coupling.SLJ
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states = States(config, coupling)
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```
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### 2. Class `Levels`
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Calculation of states in intermediate coupling, their energy levels and radiative
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transitions based on given radial integrals and Judd-Ofelt parameters is provided
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by the [class `Levels`](docs/levels.md).
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Typical initialisation code for a Pr<sup>3+</sup> ion looks like:
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```
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from yalip import Cauchy, Coupling, Levels
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config = "f2"
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coupling = Coupling.SLJ
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radial = {"base": 327.39, "H1/2": 68576.05, "H1/4": 49972.76, "H1/6": 32415.29, "H2": 728.18,
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"H3/0": 16.99, "H3/1": -417.98, "H3/2": 1371, "H5fix": 0.19, "H6fix": 1.67}
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jo = {"JO/2": 1.981, "JO/4": 4.645, "JO/6": 6.972}
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material = Cauchy(1.35123e-5, 2.94780e-3, 1.49985, -1.30933e-3, -3.23335e-6)
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ion = Levels(config, coupling, radial, jo, material)
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```
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### 3. Class `Fits`
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The [class `Fits`](docs/fits.md) is used to perform energy level and Judd-Ofelt
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fits to determine optimised radial integrals and Judd-Ofelt parameters matching
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a measured absorption spectrum.
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Typical initialisation code for a Pr<sup>3+</sup> ion looks like:
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```
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from yalip import Cauchy, Coupling, Fits
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config = "f2"
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coupling = Coupling.SLJ
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radial = {"base": 327.39, "H1/2": 68576.05, "H1/4": 49972.76, "H1/6": 32415.29, "H2": 728.18,
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"H3/0": 16.99, "H3/1": -417.98, "H3/2": 1371, "H5fix": 0.19, "H6fix": 1.67}
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material = Cauchy(1.35123e-5, 2.94780e-3, 1.49985, -1.30933e-3, -3.23335e-6)
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opt = Fits(config, coupling, radial, material)
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```
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### Example Scripts
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Some application example scripts are available in the folder [run](run).
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## Logging
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The YALIP package uses the logger package for status messages.
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The following code example provides a basic setup to make these messages visible
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on the console:
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+
|
|
98
|
+
```
|
|
99
|
+
import logging
|
|
100
|
+
from yalip import Coupling, States
|
|
101
|
+
|
|
102
|
+
logger = logging.getLogger("my_script")
|
|
103
|
+
|
|
104
|
+
def init_logger(level=logging.INFO):
|
|
105
|
+
root = logging.getLogger()
|
|
106
|
+
root.setLevel(level)
|
|
107
|
+
log_format = logging.Formatter("%(asctime)s - %(name)s - %(levelname)s - %(message)s")
|
|
108
|
+
|
|
109
|
+
console_h = logging.StreamHandler()
|
|
110
|
+
console_h.setFormatter(log_format)
|
|
111
|
+
console_h.setLevel(level)
|
|
112
|
+
root.addHandler(console_h)
|
|
113
|
+
|
|
114
|
+
if __name__ == "__main__":
|
|
115
|
+
init_logger(level=logging.DEBUG)
|
|
116
|
+
|
|
117
|
+
config = "f2"
|
|
118
|
+
coupling = Coupling.SLJ
|
|
119
|
+
|
|
120
|
+
states = States(config, coupling)
|
|
121
|
+
```
|
|
122
|
+
|
|
123
|
+
## Caching
|
|
124
|
+
|
|
125
|
+
The YALIP package uses `platformdirs.user_cache_dir()` to create a cache folder
|
|
126
|
+
for files from the AMELI repository and another one for converted floating point
|
|
127
|
+
matrices.
|
|
128
|
+
YALIP regularly checks the repository for new versions, but at most twice a day.
|
|
129
|
+
|
|
130
|
+
The decorator `functools.lru_cache` is used to keep numerical matrices in the
|
|
131
|
+
memory.
|
|
132
|
+
|
|
133
|
+
## License
|
|
134
|
+
|
|
135
|
+
This is free software under the MIT License.
|
|
136
|
+
|
|
137
|
+
## References
|
|
138
|
+
|
|
139
|
+
<span id="ref1">[1]</span> Reinhard Caspary: "Applied Rare-Earth Spectroscopy for Fiber Laser Optimization", doctoral dissertation at
|
|
140
|
+
Technische Universität Braunschweig, published with Shaker, Aachen, 2002
|
|
141
|
+
|
|
142
|
+
<span id="ref2">[2]</span> Reinhard Caspary: "AMELI: Angular Matrix Elements of Lanthanide Ions", arXiv, 2026,
|
|
143
|
+
https://doi.org/10.48550/arXiv.2603.21947
|
|
@@ -0,0 +1,31 @@
|
|
|
1
|
+
# pyproject.toml
|
|
2
|
+
[build-system]
|
|
3
|
+
requires = ["setuptools >= 61.0"]
|
|
4
|
+
build-backend = "setuptools.build_meta"
|
|
5
|
+
|
|
6
|
+
[project]
|
|
7
|
+
name = "yalip"
|
|
8
|
+
version = "0.9.0"
|
|
9
|
+
authors = [
|
|
10
|
+
{ name = "Reinhard Caspary", email = "reinhard.caspary@phoenixd.uni-hannover.de"},
|
|
11
|
+
]
|
|
12
|
+
description = "Python 3 package to calculate the energy levels of lanthanide ions."
|
|
13
|
+
readme = "README.md"
|
|
14
|
+
requires-python = ">=3.8"
|
|
15
|
+
dependencies = [
|
|
16
|
+
'numpy >= 2.4.0',
|
|
17
|
+
'scipy >= 1.17.0',
|
|
18
|
+
'h5py >= 3.16.0',
|
|
19
|
+
'requests >= 2.34.0',
|
|
20
|
+
'platformdirs >= 4.9.0',
|
|
21
|
+
]
|
|
22
|
+
classifiers = [
|
|
23
|
+
"Development Status :: 3 - Alpha",
|
|
24
|
+
"Programming Language :: Python :: 3",
|
|
25
|
+
"License :: OSI Approved :: MIT License",
|
|
26
|
+
"Operating System :: OS Independent"
|
|
27
|
+
]
|
|
28
|
+
|
|
29
|
+
[tool.setuptools.packages.find]
|
|
30
|
+
where = ["src"]
|
|
31
|
+
include = ["yalip"]
|
yalip-0.9.0/setup.cfg
ADDED
|
@@ -0,0 +1,22 @@
|
|
|
1
|
+
##########################################################################
|
|
2
|
+
# Copyright (c) 2026 Reinhard Caspary #
|
|
3
|
+
# <reinhard.caspary@phoenixd.uni-hannover.de> #
|
|
4
|
+
# This program is free software under the terms of the MIT license. #
|
|
5
|
+
##########################################################################
|
|
6
|
+
|
|
7
|
+
from enum import Enum
|
|
8
|
+
|
|
9
|
+
__version = "0.9.0"
|
|
10
|
+
|
|
11
|
+
|
|
12
|
+
class Coupling(Enum):
|
|
13
|
+
Product = 0
|
|
14
|
+
SLJM = 1
|
|
15
|
+
SLJ = 2
|
|
16
|
+
|
|
17
|
+
|
|
18
|
+
from .lanthanide import LANTHANIDES, RADIAL, JUDD_OFELT, MATERIAL
|
|
19
|
+
from .spectrum import CONST_e, CONST_eps0, CONST_me, CONST_h, CONST_c, CONST_gs, Cauchy, Sellmeier
|
|
20
|
+
from .states import States
|
|
21
|
+
from .levels import Levels
|
|
22
|
+
from .fits import Fits
|