xnatqa 0.0.9__tar.gz → 0.0.10__tar.gz

{xnatqa-0.0.9/xnatqa.egg-info → xnatqa-0.0.10}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: xnatqa
-Version: 0.0.9
+Version: 0.0.10
 Summary: A workflow for automatically labeling and running QA on MRI scans within XNAT
 Author-email: Kyle Kurkela <kkurkela@bu.edu>
 License-Expression: MIT

{xnatqa-0.0.9 → xnatqa-0.0.10}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "xnatqa"
-version = "0.0.9"
+version = "0.0.10"
 authors = [
   { name="Kyle Kurkela", email="kkurkela@bu.edu" },
 ]
@@ -29,4 +29,4 @@ Issues = "https://github.com/kakurk/auto_labeler/issues"
 
 [build-system]
 requires = ["setuptools >= 77.0.3"]
-build-backend = "setuptools.build_meta"
+build-backend = "setuptools.build_meta"

{xnatqa-0.0.9 → xnatqa-0.0.10}/xnatqa/xnatqa.py

@@ -6,23 +6,17 @@ from xnatqa.launch import launch
 def main():
 
     # parse input arguments
-    parser = argparse.ArgumentParser(description="Auto Labeler")
+    parser = argparse.ArgumentParser(description="XNAT QA Workflow")
     parser.add_argument("--dicom_dir", default="/input", help = "where the DICOMs are located", required=True)
-    parser.add_argument("--host", default="https://xnat2.bu.edu", help="BU XNAT host", required=True)
-    parser.add_argument("--user", help="BU XNAT2 username", required=True)
-    parser.add_argument("--password", help="BU XNAT2 Password", required=True)
     parser.add_argument("--experiment", default = "", required=True)
 
     args, unknown_args = parser.parse_known_args()
     dicom_dir  = os.path.join(args.dicom_dir, 'SCANS')
-    host       = args.host
-    user       = args.user
-    password   = args.password
     experiment = args.experiment
 
     # run xnat authentication for this container. writes an ~/.xnat_auth file to the home directory
     # this file is used in all subsequent calls to XNAT
-    os.system(f'xnat_auth --alias xnat --url {host} --username {user} --password {password}')
+    os.system(f'xnat_auth --alias xnat --url $XNAT_HOST --username $XNAT_USER --password $XNAT_PASS')
 
     # tag all scans in this session
     tag_scans(dicom_dir, experiment)

{xnatqa-0.0.9 → xnatqa-0.0.10/xnatqa.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: xnatqa
-Version: 0.0.9
+Version: 0.0.10
 Summary: A workflow for automatically labeling and running QA on MRI scans within XNAT
 Author-email: Kyle Kurkela <kkurkela@bu.edu>
 License-Expression: MIT