xnatqa 0.0.12__tar.gz → 0.0.13__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {xnatqa-0.0.12/xnatqa.egg-info → xnatqa-0.0.13}/PKG-INFO +1 -1
- {xnatqa-0.0.12 → xnatqa-0.0.13}/pyproject.toml +1 -1
- {xnatqa-0.0.12 → xnatqa-0.0.13}/xnatqa/tag/__init__.py +1 -1
- {xnatqa-0.0.12 → xnatqa-0.0.13/xnatqa.egg-info}/PKG-INFO +1 -1
- {xnatqa-0.0.12 → xnatqa-0.0.13}/LICENSE +0 -0
- {xnatqa-0.0.12 → xnatqa-0.0.13}/README.md +0 -0
- {xnatqa-0.0.12 → xnatqa-0.0.13}/setup.cfg +0 -0
- {xnatqa-0.0.12 → xnatqa-0.0.13}/xnatqa/__init__.py +0 -0
- {xnatqa-0.0.12 → xnatqa-0.0.13}/xnatqa/xnatqa.py +0 -0
- {xnatqa-0.0.12 → xnatqa-0.0.13}/xnatqa.egg-info/SOURCES.txt +0 -0
- {xnatqa-0.0.12 → xnatqa-0.0.13}/xnatqa.egg-info/dependency_links.txt +0 -0
- {xnatqa-0.0.12 → xnatqa-0.0.13}/xnatqa.egg-info/entry_points.txt +0 -0
- {xnatqa-0.0.12 → xnatqa-0.0.13}/xnatqa.egg-info/requires.txt +0 -0
- {xnatqa-0.0.12 → xnatqa-0.0.13}/xnatqa.egg-info/top_level.txt +0 -0
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@@ -19,7 +19,7 @@ def generate_tagger_config(dicom_dir):
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# This seems to work well most of the time, with the odd hicups. I include manual code here to catch the "hicups".
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# call to dcm2niix. generates a bunch of *.json text files in the current working directory.
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os.system(f"dcm2niix -s y -a y -b o -o $PWD -f 'output_%s_%d' -w 0 -m 1 -i y {dicom_dir}
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os.system(f"dcm2niix -s y -a y -b o -o $PWD -f 'output_%s_%d' -w 0 -m 1 -i y {dicom_dir}")
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# idenfity all of these text files
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jsonFiles = glob(os.path.abspath('./output*.json'))
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