xnatqa 0.0.11__tar.gz → 0.0.13__tar.gz

{xnatqa-0.0.11/xnatqa.egg-info → xnatqa-0.0.13}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: xnatqa
-Version: 0.0.11
+Version: 0.0.13
 Summary: A workflow for automatically labeling and running QA on MRI scans within XNAT
 Author-email: Kyle Kurkela <kkurkela@bu.edu>
 License-Expression: MIT

{xnatqa-0.0.11 → xnatqa-0.0.13}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "xnatqa"
-version = "0.0.11"
+version = "0.0.13"
 authors = [
   { name="Kyle Kurkela", email="kkurkela@bu.edu" },
 ]

{xnatqa-0.0.11 → xnatqa-0.0.13}/xnatqa/tag/__init__.py

@@ -19,10 +19,10 @@ def generate_tagger_config(dicom_dir):
     # This seems to work well most of the time, with the odd hicups. I include manual code here to catch the "hicups".
 
     # call to dcm2niix. generates a bunch of *.json text files in the current working directory.
-    os.system(f"dcm2niix -s y -a y -b o -o $PWD -f 'output_%s_%d' -w 0 -m 1 -i y {dicom_dir} &>>log.txt")
+    os.system(f"dcm2niix -s y -a y -b o -o $PWD -f 'output_%s_%d' -w 0 -m 1 -i y {dicom_dir}")
 
     # idenfity all of these text files
-    jsonFiles = glob('./output*.json')
+    jsonFiles = glob(os.path.abspath('./output*.json'))
 
     # sort the found files so that they are in decensing order by series_number
     # this is probably unnecssary
@@ -180,6 +180,8 @@ def generate_tagger_config(dicom_dir):
     with open('tagger.yaml', 'a') as file:
         yaml.dump(tagger_data, file)
 
+    print(tagger_data)
+
 def update_xnat_tags(MRsession):
 
     # make sure an xnat authentication files has already been created. See YXAIL documentation.

{xnatqa-0.0.11 → xnatqa-0.0.13/xnatqa.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: xnatqa
-Version: 0.0.11
+Version: 0.0.13
 Summary: A workflow for automatically labeling and running QA on MRI scans within XNAT
 Author-email: Kyle Kurkela <kkurkela@bu.edu>
 License-Expression: MIT