xarray-behave 0.37.3__tar.gz → 0.37.4__tar.gz

xarray_behave-0.37.4/.github/workflows/test_install.yaml

@@ -0,0 +1,46 @@
+name: Test install
+
+on:
+  release:
+    types:
+      - published
+  workflow_dispatch:
+    inputs:
+      logLevel:
+        description: 'Log level'
+        required: true
+        default: 'warning'
+      tags:
+        description: 'manual run'
+
+jobs:
+  test:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: False
+      matrix:
+        os: [ubuntu-latest, windows-latest, macOS-latest]
+    defaults:  # https://github.com/marketplace/actions/setup-miniconda#use-a-default-shell
+      run:
+        shell: bash -l {0}
+    steps:
+    - uses: actions/checkout@v4
+    - name: Setup miniconda # https://github.com/marketplace/actions/setup-miniconda
+      uses: conda-incubator/setup-miniconda@v3
+      with:
+        auto-update-conda: true
+        auto-activate-base: true
+        channels: conda-forge
+        python-version: 3.13
+    - name: Install OpenGL dependencies
+      run: sudo apt-get update && sudo apt-get install -qq -y libx11-dev libgl1-mesa-dev libxkbcommon-x11-0
+      if: runner.os == 'Linux'
+    - name: Test
+      run: |
+        conda env create -n xb_test -y -f https://raw.githubusercontent.com/janclemenslab/xarray-behave/refs/heads/master/env/xb.yml
+        conda activate xb_test
+        python -c "import xarray_behave; print(xarray_behave.__version__)"
+        python -c "import xarray_behave.gui.app"
+        python tests/test_imports.py
+        python tests/test_io.py
+        python tests/test_sampstamps.py

{xarray_behave-0.37.3 → xarray_behave-0.37.4}/PKG-INFO

@@ -1,17 +1,18 @@
-Metadata-Version: 2.3
+Metadata-Version: 2.4
 Name: xarray-behave
-Version: 0.37.3
+Version: 0.37.4
 Summary: xarray tools for behavioral data.
 Author-email: Jan Clemens <clemensjan@googlemail.com>
-Requires-Python: >3.9
+Requires-Python: >=3.10
 Description-Content-Type: text/markdown
 Classifier: License :: OSI Approved :: Apache Software License
+License-File: LICENSE
 Requires-Dist: defopt==6.3
 Requires-Dist: rich
 Requires-Dist: flammkuchen
 Requires-Dist: h5py
 Requires-Dist: pyyaml
-Requires-Dist: zarr
+Requires-Dist: zarr<3
 Requires-Dist: dask
 Requires-Dist: pandas
 Requires-Dist: xarray
@@ -25,20 +26,23 @@ Requires-Dist: soundfile
 Requires-Dist: librosa>0.8
 Requires-Dist: opencv-python-headless
 Requires-Dist: pyvideoreader
-Requires-Dist: PySide6-Essentials
+Requires-Dist: PySide6-Essentials==6.8.*
 Requires-Dist: pyqtgraph>0.12.2
 Requires-Dist: qtpy
 Requires-Dist: superqt
 Requires-Dist: colorcet
+Requires-Dist: pytest ; extra == "dev"
+Requires-Dist: flit ; extra == "dev"
 Project-URL: documentation, https://janclemenslab.org/das/
 Project-URL: source, https://github.com/janclemenslab/xarray-behave
+Provides-Extra: dev
 
 # xarray-behave
 
-Install a working conda installation (see [here](https://docs.conda.io/en/latest/miniconda.html)). 
+Install a working conda installation (see [here](https://docs.conda.io/en/latest/miniconda.html)).
 
 ```shell
-conda create -c conda-forge -c ncb -n xb python=3.12 xarray-behave
+conda env create -n xb -y -f https://raw.githubusercontent.com/janclemenslab/xarray-behave/refs/heads/master/env/xb.yml
 ```
 
 See `demo.ipynb` for usage examples.

xarray_behave-0.37.4/README.md

@@ -0,0 +1,9 @@
+# xarray-behave
+
+Install a working conda installation (see [here](https://docs.conda.io/en/latest/miniconda.html)).
+
+```shell
+conda env create -n xb -y -f https://raw.githubusercontent.com/janclemenslab/xarray-behave/refs/heads/master/env/xb.yml
+```
+
+See `demo.ipynb` for usage examples.

xarray_behave-0.37.4/env/xb.yml

@@ -0,0 +1,10 @@
+name: xb
+channels:
+  - conda-forge
+  - nodefaults
+dependencies:
+  - python>=3.10
+  - pip
+  - ffmpeg
+  - pip:
+    - xarray-behave

xarray_behave-0.37.4/pyproject.toml

@@ -0,0 +1,57 @@
+[build-system]
+requires = ["flit_core >=3.2"]
+build-backend = "flit_core.buildapi"
+
+[project]
+name = "xarray-behave"
+authors = [{ name = "Jan Clemens", email = "clemensjan@googlemail.com" }]
+classifiers = ["License :: OSI Approved :: Apache Software License"]
+dynamic = ["version", "description"]
+requires-python = ">=3.10"
+dependencies = [
+       'defopt==6.3',
+       'rich',
+       'flammkuchen',
+       'h5py',
+       'pyyaml',
+       'zarr<3',
+       'dask',
+       'pandas',
+       'xarray',
+       'scikit-image',
+       'peakutils',
+       'numba',
+       'numpy',
+       'scipy>1.9',
+       'sounddevice',
+       'soundfile',
+       'librosa>0.8',
+       'opencv-python-headless',
+       'pyvideoreader',
+       'PySide6-Essentials==6.8.*',
+       'pyqtgraph>0.12.2',
+       'qtpy',
+       'superqt',
+       'colorcet',
+]
+readme = "README.md"
+
+[project.optional-dependencies]
+dev = ["pytest", "flit"]
+
+[project.urls]
+source = "https://github.com/janclemenslab/xarray-behave"
+documentation = "https://janclemenslab.org/das/"
+
+[tool.flit.module]
+name = "xarray_behave"
+
+[tool.pytest.ini_options]
+minversion = "6.0"
+testpaths = ["tests"]
+
+[tool.ruff]
+extend-select = ["C4", "NPY", "PD", "TCH"]
+ignore = ["E501"]
+show-fixes = true
+line-length = 196

{xarray_behave-0.37.3 → xarray_behave-0.37.4}/setup.py

@@ -7,7 +7,7 @@ here = os.path.abspath(os.path.dirname(__file__))
 
 
 def read(*parts):
-    with codecs.open(os.path.join(here, *parts), 'r') as fp:
+    with codecs.open(os.path.join(here, *parts), "r") as fp:
         return fp.read()
 
 
@@ -20,6 +20,6 @@ def find_version(*file_paths):
 
 
 setup(
-    name='xarray-behave',
+    name="xarray-behave",
     version=find_version("src/xarray_behave/__init__.py"),
-)
+)

{xarray_behave-0.37.3 → xarray_behave-0.37.4}/src/xarray_behave/__init__.py

@@ -1,6 +1,6 @@
 """xarray tools for behavioral data."""
 
-__version__ = "0.37.3"
+__version__ = "0.37.4"
 
 from .xarray_behave import assemble, assemble_metrics, load, save
 import os

{xarray_behave-0.37.3 → xarray_behave-0.37.4}/src/xarray_behave/io/movieparams.py

@@ -1,6 +1,4 @@
-"""Load parameters for DLP movies
-
-"""
+"""Load parameters for DLP movies"""
 
 import numpy as np
 import pandas as pd

{xarray_behave-0.37.3 → xarray_behave-0.37.4}/tests/test_annot.py

@@ -56,9 +56,7 @@ def test_from_ds(test_data):
         ],
     )
     names.attrs["allowed_names"] = list(set(names.data))
-    times = xr.DataArray(
-        name="event_times", data=times, dims=["index", "event_time"], coords={"event_time": ["start_seconds", "stop_seconds"]}
-    )
+    times = xr.DataArray(name="event_times", data=times, dims=["index", "event_time"], coords={"event_time": ["start_seconds", "stop_seconds"]})
     names, times
     ds = xr.Dataset({da.name: da for da in [names, times]})
     ds.attrs["pulse"] = "event"

{xarray_behave-0.37.3 → xarray_behave-0.37.4}/tests/test_imports.py

@@ -1,6 +1,3 @@
-import pytest
-
-
 def test_imports():
     import xarray_behave as xb
     import xarray_behave.event_utils

{xarray_behave-0.37.3 → xarray_behave-0.37.4}/tests/test_io.py

@@ -1,10 +1,8 @@
-import pytest
-
 import numpy as np
 import xarray as xr
 import pandas as pd
 from xarray_behave import io
 
+
 def test_call():
     io
-

xarray_behave-0.37.3/.github/workflows/publish.yaml

@@ -1,55 +0,0 @@
-name: Publish to Anaconda.org
-
-on:
-  release:
-    types:
-      - published
-  workflow_dispatch:
-    inputs:
-      logLevel:
-        description: 'Log level'
-        required: true
-        default: 'warning'
-      tags:
-        description: 'manual run'
-
-jobs:
-  publish:
-    runs-on: ${{ matrix.os }}
-    strategy:
-      fail-fast: False
-      matrix:
-        python-version: ['3.10', '3.11', '3.12']
-        os: [ubuntu-latest, windows-latest, macOS-14]
-    defaults:  # https://github.com/marketplace/actions/setup-miniconda#use-a-default-shell
-      run:
-        shell: bash -l {0}
-    steps:
-    - uses: actions/checkout@v4
-    - name: Setup miniconda # https://github.com/marketplace/actions/setup-miniconda
-      uses: conda-incubator/setup-miniconda@v3
-      with:
-        auto-update-conda: true
-        channels: conda-forge,ncb
-        python-version: 3.12
-        auto-activate-base: false
-        activate-environment: anaconda-client-env
-        environment-file: build_env.yml
-        condarc-file: condarc.yml
-    - name: Build
-      run: |
-        mkdir ./build
-        conda build conda/xarray-behave --no-test --no-anaconda-upload --python ${{ matrix.python-version }} --output-folder ./build
-    - name: Test
-      run: |
-        conda deactivate
-        conda create -n xb_test python=${{ matrix.python-version }} xarray-behave -c ./build -c local -c conda-forge -c ncb -y
-        conda activate xb_test
-        python -c "import xarray_behave; print(xarray_behave.__version__)"
-        python -c "import xarray_behave.gui.app"
-        # xb --help  
-    - name: Upload
-      run: |
-        conda build conda/xarray-behave --no-test --python ${{ matrix.python-version }} --output-folder ./build --user ncb --token ${{ secrets.ANACONDA_TOKEN }}
-      env:
-        ANACONDA_TOKEN: ${{ secrets.ANACONDA_TOKEN }}

xarray_behave-0.37.3/README.md

@@ -1,9 +0,0 @@
-# xarray-behave
-
-Install a working conda installation (see [here](https://docs.conda.io/en/latest/miniconda.html)). 
-
-```shell
-conda create -c conda-forge -c ncb -n xb python=3.12 xarray-behave
-```
-
-See `demo.ipynb` for usage examples.

xarray_behave-0.37.3/build_env.yml

@@ -1,9 +0,0 @@
-name: anaconda-client-env
-channels:
-  - conda-forge
-dependencies:
-  - conda
-  - anaconda-client
-  - conda-build
-  - pip
-  - git

xarray_behave-0.37.3/conda/xarray-behave/bld.bat

@@ -1,10 +0,0 @@
-# We need to turn pip index back on because Anaconda turns
-# it off for some reason.
-set PIP_NO_INDEX=False
-set PIP_NO_DEPENDENCIES=False
-set PIP_IGNORE_INSTALLED=False
-
-"%PYTHON%" -m pip install simpleaudio -vv --no-dependencies
-"%PYTHON%" -m pip install pkgutil_resolve_name -vv --no-dependencies
-"%PYTHON%" -m pip install xarray-behave[gui] -vv --no-dependencies
-if errorlevel 1 exit 1

xarray_behave-0.37.3/conda/xarray-behave/build.sh

@@ -1,11 +0,0 @@
-# We need to turn pip index back on because Anaconda turns
-# it off for some reason.
-export PIP_NO_INDEX=False
-export PIP_NO_DEPENDENCIES=False
-export PIP_IGNORE_INSTALLED=False
-
-if [[ "$OSTYPE" == "darwin"* ]]; then
-  $PYTHON -m pip install simpleaudio -vv --no-dependencies
-fi
-$PYTHON -m pip install pkgutil_resolve_name -vv --no-dependencies
-$PYTHON -m pip install xarray-behave[gui] -vv --no-dependencies

xarray_behave-0.37.3/conda/xarray-behave/meta.yaml

@@ -1,57 +0,0 @@
-{% set data = load_setup_py_data(setup_file='../../setup.py', from_recipe_dir=True) %}
-{% set name = data.get('name') %}
-{% set version = data.get('version') %}
-
-package:
-  name: "{{ name }}"
-  version: "{{ version }}"
-
-source:
-  url: https://pypi.org/packages/source/x/xarray-behave/xarray_behave-{{ version }}.tar.gz
-build:
-  number: 0
-
-requirements:
-  host:
-    - python {{ python }}
-    - pip
-  run:
-    - python {{ python }}
-    - defopt=6.3
-    - rich
-    - flammkuchen
-    - h5py
-    - pyyaml
-    - zarr
-    - numba
-    - xarray
-    - dask
-    - librosa>0.8
-    - pysoundfile
-    - python-sounddevice
-    - matplotlib
-    - colorcet
-    - pandas
-    - scipy>=1.9
-    - scikit-image
-    - scikit-learn
-    - peakutils
-    - pyside6
-    - pyqtgraph>0.12
-    - qtpy
-    - superqt
-    - ffmpeg
-    - pyvideoreader
-
-about:
-  home: "http://github.com/janclemenslab/xarray-behave"
-  license: MIT
-  license_family: MIT
-  license_file:
-  summary: "xarray behave"
-  doc_url: "https://janclemenslab.org/xarray-behave"
-  dev_url: "http://github.com/janclemenslab/xarray-behave"
-
-extra:
-  recipe-maintainers:
-    - postpop

xarray_behave-0.37.3/condarc.yml

@@ -1,9 +0,0 @@
-anaconda_upload: yes
-always_yes: yes
-changeps1: no
-channel_priority: flexible 
-channels:
-- conda-forge
-- ncb
-conda-build:
-   pkg_format: 2

xarray_behave-0.37.3/pyproject.toml

@@ -1,38 +0,0 @@
-[build-system]
-requires = ["flit_core >=3.2"]
-build-backend = "flit_core.buildapi"
-
-[project]
-name = "xarray-behave"
-authors = [
-       {name = "Jan Clemens", email = "clemensjan@googlemail.com"},
-]
-classifiers = ["License :: OSI Approved :: Apache Software License"]
-dynamic = ["version", "description"]
-requires-python = ">3.9"
-dependencies = ['defopt==6.3', 'rich',
-                'flammkuchen', 'h5py', 'pyyaml', 'zarr', 'dask', 'pandas', 'xarray',
-                'scikit-image', 'peakutils', 'numba', 'numpy', 'scipy>1.9',
-                'sounddevice', 'soundfile', 'librosa>0.8',
-                'opencv-python-headless', 'pyvideoreader',
-                'PySide6-Essentials', 'pyqtgraph>0.12.2', 'qtpy', 'superqt', 'colorcet'
-                ]
-
-readme = "README.md"
-
-[project.urls]
-source = "https://github.com/janclemenslab/xarray-behave"
-documentation = "https://janclemenslab.org/das/"
-
-[tool.flit.module]
-name = "xarray_behave"
-
-[tool.pytest.ini_options]
-minversion = "6.0"
-testpaths = ["tests",]
-
-[tool.ruff]
-extend-select = ["C4", "NPY", "PD", "TCH"]
-ignore = ["E501"]
-show-fixes = true
-line-length = 196