x-neat 0.0.3__tar.gz

x_neat-0.0.3/.gitignore

@@ -0,0 +1,210 @@
+recorded-populations/
+population.json
+
+.DS_Store
+recordings/
+neat_nim
+tests/nim_test_neat
+
+# Nim related
+nimcache/
+nimblecache/
+htmldocs/
+
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
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+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# UV
+#   Similar to Pipfile.lock, it is generally recommended to include uv.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#uv.lock
+
+# poetry
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+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+#   in version control.
+#   https://pdm.fming.dev/latest/usage/project/#working-with-version-control
+.pdm.toml
+.pdm-python
+.pdm-build/
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
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+# Rope project settings
+.ropeproject
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+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
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+# pytype static type analyzer
+.pytype/
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+# Cython debug symbols
+cython_debug/
+
+# PyCharm
+#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+#  and can be added to the global gitignore or merged into this file.  For a more nuclear
+#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
+#.idea/
+
+# Abstra
+# Abstra is an AI-powered process automation framework.
+# Ignore directories containing user credentials, local state, and settings.
+# Learn more at https://abstra.io/docs
+.abstra/
+
+# Visual Studio Code
+#  Visual Studio Code specific template is maintained in a separate VisualStudioCode.gitignore 
+#  that can be found at https://github.com/github/gitignore/blob/main/Global/VisualStudioCode.gitignore
+#  and can be added to the global gitignore or merged into this file. However, if you prefer, 
+#  you could uncomment the following to ignore the enitre vscode folder
+# .vscode/
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+# Ruff stuff:
+.ruff_cache/
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+#  Cursor is an AI-powered code editor. `.cursorignore` specifies files/directories to
+#  exclude from AI features like autocomplete and code analysis. Recommended for sensitive data
+#  refer to https://docs.cursor.com/context/ignore-files
+.cursorignore
+.cursorindexingignore
+nimble.develop
+nimble.paths
+nimbledeps

x_neat-0.0.3/LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2025 Phil Wang
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

x_neat-0.0.3/MANIFEST.in

@@ -0,0 +1,12 @@
+# Only ship the package, pyproject, readme, and nim sources
+include pyproject.toml
+include README.md
+include .gitignore
+include neat/neat_nim.nim
+
+prune tests
+prune nim-extensions
+exclude setup.py
+exclude setup.cfg
+global-exclude __pycache__/*
+global-exclude *.py[cod]

x_neat-0.0.3/PKG-INFO

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+Metadata-Version: 2.4
+Name: x-neat
+Version: 0.0.3
+Summary: NEAT
+Author-email: Phil Wang <lucidrains@gmail.com>
+License: MIT License
+        
+        Copyright (c) 2025 Phil Wang
+        
+        Permission is hereby granted, free of charge, to any person obtaining a copy
+        of this software and associated documentation files (the "Software"), to deal
+        in the Software without restriction, including without limitation the rights
+        to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+        copies of the Software, and to permit persons to whom the Software is
+        furnished to do so, subject to the following conditions:
+        
+        The above copyright notice and this permission notice shall be included in all
+        copies or substantial portions of the Software.
+        
+        THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+        IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+        FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+        AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+        LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+        OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+        SOFTWARE.
+        
+Project-URL: Homepage, https://pypi.org/project/x-neat/
+Project-URL: Repository, https://github.com/lucidrains/neat
+Keywords: artificial intelligence,deep learning,neuroevolutionary algorithms
+Classifier: Development Status :: 4 - Beta
+Classifier: Intended Audience :: Developers
+Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Programming Language :: Python :: 3.9
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: einops>=0.8.1
+Requires-Dist: nimporter-plus>=0.0.6
+Requires-Dist: numpy
+Requires-Dist: setuptools
+Provides-Extra: examples
+Provides-Extra: test
+Requires-Dist: pytest; extra == "test"
+Provides-Extra: gym
+Requires-Dist: box2d-py; extra == "gym"
+Requires-Dist: fire; extra == "gym"
+Requires-Dist: gymnasium[box2d]>=1.0.0; extra == "gym"
+Requires-Dist: moviepy>=1.0.3; extra == "gym"
+Requires-Dist: numpy>=2.2.5; extra == "gym"
+Requires-Dist: swig; extra == "gym"
+Requires-Dist: tqdm; extra == "gym"
+Requires-Dist: wandb[media]; extra == "gym"
+Dynamic: license-file
+
+## neat (wip)
+
+Explorations into NEAT and some of its derivative research
+
+## install
+
+In project root, run
+
+```bash
+$ sh install.sh
+```
+
+## quick test
+
+```bash
+$ uv run train_lunar.py
+```
+
+## citations
+
+```bibtex
+@article{Stanley2011CompetitiveCT,
+    title   = {Competitive Coevolution through Evolutionary Complexification},
+    author  = {Kenneth O. Stanley and Risto Miikkulainen},
+    journal = {ArXiv},
+    year    = {2011},
+    volume  = {abs/1107.0037},
+    url     = {https://api.semanticscholar.org/CorpusID:11881625}
+}
+```
+
+```bibtex
+@inproceedings{4665912,
+    author  = {Miguel, Cesar Gomes and Silva, Carolina Feher da and Netto, Marcio Lobo},
+    booktitle = {2008 10th Brazilian Symposium on Neural Networks},
+    title   = {Structural and Parametric Evolution of Continuous-Time Recurrent Neural Networks},
+    year    = {2008},
+    doi     = {10.1109/SBRN.2008.12}
+}
+```
+
+```bibtex
+@article{Khamesian2021HybridSN,
+    title   = {Hybrid self-attention NEAT: a novel evolutionary self-attention approach to improve the NEAT algorithm in high dimensional inputs},
+    author  = {Saman Khamesian and Hamed Malek},
+    journal = {Evolving Systems},
+    year    = {2021},
+    pages   = {1-15},
+    url     = {https://api.semanticscholar.org/CorpusID:244920723}
+}
+```
+
+```bibtex
+@article{Hornby2006AutomatedAD,
+    title   = {Automated Antenna Design with Evolutionary Algorithms},
+    author  = {Gregory Hornby and Al Globus and Derek S. Linden and Jason D. Lohn},
+    journal = {Space},
+    year    = {2006},
+    url     = {https://api.semanticscholar.org/CorpusID:8290212}
+}
+```
+
+```bibtex
+@inproceedings{schrum:gecco14,
+    title   = {Evolving Multimodal Behavior With Modular Neural Networks in Ms. Pac-Man},
+    author  = {Jacob Schrum and Risto Miikkulainen},
+    booktitle = {Proceedings of the Genetic and Evolutionary Computation Conference (GECCO 2014)},
+    month   = {July},
+    address = {Vancouver, BC, Canada},
+    pages   = {325--332},
+    note    = {Best Paper: Digital Entertainment and Arts},
+    url     = {http://www.cs.utexas.edu/users/ai-lab?schrum:gecco2014},
+    year    = {2014}
+```
+
+```bibtex
+@article{stanley:ec02,
+    title   = {Evolving Neural Networks Through Augmenting Topologies},
+    author  = {Kenneth O. Stanley and Risto Miikkulainen},
+    volume  = {10},
+    journal = {Evolutionary Computation},
+    number  = {2},
+    pages   = {99-127},
+    url     = "http://nn.cs.utexas.edu/?stanley:ec02",
+    year    = {2002}
+}
+```
+
+```bibtex
+@misc{doerr2017fastgeneticalgorithms,
+    title   = {Fast Genetic Algorithms},
+    author  = {Benjamin Doerr and Huu Phuoc Le and Régis Makhmara and Ta Duy Nguyen},
+    year    = {2017},
+    eprint  = {1703.03334},
+    archivePrefix = {arXiv},
+    primaryClass = {cs.NE},
+    url     = {https://arxiv.org/abs/1703.03334},
+}
+```
+
+```bibtex
+@misc{legg2004tournamentversusfitnessuniform,
+    title   = {Tournament versus Fitness Uniform Selection},
+    author  = {Shane Legg and Marcus Hutter and Akshat Kumar},
+    year    = {2004},
+    eprint  = {cs/0403038},
+    archivePrefix = {arXiv},
+    primaryClass = {cs.LG},
+    url     = {https://arxiv.org/abs/cs/0403038},
+}
+```
+
+```bibtex
+@article{hiraga2024improving,
+    title   = {Improving the performance of mutation-based evolving artificial neural networks with self-adaptive mutations},
+    author  = {Hiraga, Motoaki and Komura, Masahiro and Miyamoto, Akiharu and Morimoto, Daichi and Ohkura, Kazuhiro},
+    journal = {PLOS ONE},
+    volume  = {19},
+    number  = {7},
+    pages   = {e0307084},
+    year    = {2024},
+    publisher = {Public Library of Science},
+    doi     = {10.1371/journal.pone.0307084},
+    url     ={https://doi.org/10.1371/journal.pone.0307084}
+}
+```

x_neat-0.0.3/README.md

@@ -0,0 +1,126 @@
+## neat (wip)
+
+Explorations into NEAT and some of its derivative research
+
+## install
+
+In project root, run
+
+```bash
+$ sh install.sh
+```
+
+## quick test
+
+```bash
+$ uv run train_lunar.py
+```
+
+## citations
+
+```bibtex
+@article{Stanley2011CompetitiveCT,
+    title   = {Competitive Coevolution through Evolutionary Complexification},
+    author  = {Kenneth O. Stanley and Risto Miikkulainen},
+    journal = {ArXiv},
+    year    = {2011},
+    volume  = {abs/1107.0037},
+    url     = {https://api.semanticscholar.org/CorpusID:11881625}
+}
+```
+
+```bibtex
+@inproceedings{4665912,
+    author  = {Miguel, Cesar Gomes and Silva, Carolina Feher da and Netto, Marcio Lobo},
+    booktitle = {2008 10th Brazilian Symposium on Neural Networks},
+    title   = {Structural and Parametric Evolution of Continuous-Time Recurrent Neural Networks},
+    year    = {2008},
+    doi     = {10.1109/SBRN.2008.12}
+}
+```
+
+```bibtex
+@article{Khamesian2021HybridSN,
+    title   = {Hybrid self-attention NEAT: a novel evolutionary self-attention approach to improve the NEAT algorithm in high dimensional inputs},
+    author  = {Saman Khamesian and Hamed Malek},
+    journal = {Evolving Systems},
+    year    = {2021},
+    pages   = {1-15},
+    url     = {https://api.semanticscholar.org/CorpusID:244920723}
+}
+```
+
+```bibtex
+@article{Hornby2006AutomatedAD,
+    title   = {Automated Antenna Design with Evolutionary Algorithms},
+    author  = {Gregory Hornby and Al Globus and Derek S. Linden and Jason D. Lohn},
+    journal = {Space},
+    year    = {2006},
+    url     = {https://api.semanticscholar.org/CorpusID:8290212}
+}
+```
+
+```bibtex
+@inproceedings{schrum:gecco14,
+    title   = {Evolving Multimodal Behavior With Modular Neural Networks in Ms. Pac-Man},
+    author  = {Jacob Schrum and Risto Miikkulainen},
+    booktitle = {Proceedings of the Genetic and Evolutionary Computation Conference (GECCO 2014)},
+    month   = {July},
+    address = {Vancouver, BC, Canada},
+    pages   = {325--332},
+    note    = {Best Paper: Digital Entertainment and Arts},
+    url     = {http://www.cs.utexas.edu/users/ai-lab?schrum:gecco2014},
+    year    = {2014}
+```
+
+```bibtex
+@article{stanley:ec02,
+    title   = {Evolving Neural Networks Through Augmenting Topologies},
+    author  = {Kenneth O. Stanley and Risto Miikkulainen},
+    volume  = {10},
+    journal = {Evolutionary Computation},
+    number  = {2},
+    pages   = {99-127},
+    url     = "http://nn.cs.utexas.edu/?stanley:ec02",
+    year    = {2002}
+}
+```
+
+```bibtex
+@misc{doerr2017fastgeneticalgorithms,
+    title   = {Fast Genetic Algorithms},
+    author  = {Benjamin Doerr and Huu Phuoc Le and Régis Makhmara and Ta Duy Nguyen},
+    year    = {2017},
+    eprint  = {1703.03334},
+    archivePrefix = {arXiv},
+    primaryClass = {cs.NE},
+    url     = {https://arxiv.org/abs/1703.03334},
+}
+```
+
+```bibtex
+@misc{legg2004tournamentversusfitnessuniform,
+    title   = {Tournament versus Fitness Uniform Selection},
+    author  = {Shane Legg and Marcus Hutter and Akshat Kumar},
+    year    = {2004},
+    eprint  = {cs/0403038},
+    archivePrefix = {arXiv},
+    primaryClass = {cs.LG},
+    url     = {https://arxiv.org/abs/cs/0403038},
+}
+```
+
+```bibtex
+@article{hiraga2024improving,
+    title   = {Improving the performance of mutation-based evolving artificial neural networks with self-adaptive mutations},
+    author  = {Hiraga, Motoaki and Komura, Masahiro and Miyamoto, Akiharu and Morimoto, Daichi and Ohkura, Kazuhiro},
+    journal = {PLOS ONE},
+    volume  = {19},
+    number  = {7},
+    pages   = {e0307084},
+    year    = {2024},
+    publisher = {Public Library of Science},
+    doi     = {10.1371/journal.pone.0307084},
+    url     ={https://doi.org/10.1371/journal.pone.0307084}
+}
+```

x_neat-0.0.3/neat/__init__.py

@@ -0,0 +1,4 @@
+from neat.neat import (
+    NEAT,
+    Topology
+)