wwpdb.utils.testing 0.17.2__tar.gz → 0.18__tar.gz

wwpdb_utils_testing-0.18/LICENSE

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+
+   Licensed under the Apache License, Version 2.0 (the "License");
+   you may not use this file except in compliance with the License.
+   You may obtain a copy of the License at
+
+       http://www.apache.org/licenses/LICENSE-2.0
+
+   Unless required by applicable law or agreed to in writing, software
+   distributed under the License is distributed on an "AS IS" BASIS,
+   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+   See the License for the specific language governing permissions and
+   limitations under the License.

wwpdb_utils_testing-0.18/MANIFEST.in

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+# These are included in sdist - not wheel
+include tox.ini
+include requirements.txt
+include wwpdb/mock-data/README.md
+recursive-include wwpdb/mock-data/site-config *
+recursive-include wwpdb/mock-data/da_top/data/archive *.V3
+recursive-include wwpdb/mock-data/da_top/resources_ro actionData.xml depui/site_access_info.json emd/emdb_fsc.xsd content_ws/*
+recursive-include wwpdb/mock-data/da_top/webapps/htdocs/msgmodule *
+include wwpdb/mock-data/da_top/webapps/version.json
+recursive-include wwpdb/utils/tests-testing *.py

wwpdb_utils_testing-0.18/PKG-INFO

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+Metadata-Version: 2.1
+Name: wwpdb.utils.testing
+Version: 0.18
+Summary: wwPDB Python DB Schema Utilities
+Author-email: Ezra Peisach <ezra.peisach@rcsb.org>
+License: Apache 2.0
+Project-URL: Homepage, https://github,com/wwpdb/py-wwpdb_utils_testing
+Classifier: Intended Audience :: Developers
+Classifier: Natural Language :: English
+Classifier: License :: OSI Approved :: Apache Software License
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 2.7
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.6
+Classifier: Programming Language :: Python :: 3.7
+Requires-Python: >=3.6
+Description-Content-Type: text/markdown
+License-File: LICENSE
+
+# OneDep Core Testing Library
+
+[![Build Status](https://dev.azure.com/wwPDB/wwPDB%20Python%20Projects/_apis/build/status/wwPDB.py-wwpdb_utils_testing?branchName=master)](https://dev.azure.com/wwPDB/wwPDB%20Python%20Projects/_build/latest?definitionId=1&branchName=master)
+
+## Introduction
+
+This repository can be used by the test suite to setup/test for running environments
+
+The code in here will allow for common setup of site-config harness as
+well of allowing for fixtures to test the environment to determine if
+a test can be invoked.
+
+### Installation
+
+Download the library source software from the project repository:
+
+```bash
+
+git clone  --recurse-submodules  https://github.com/wwPDB/py-wwpdb_utils_testing.git
+
+```
+
+Optionally, run test suite using the Tox test runner.
+
+```bash
+tox
+```
+
+Installation is via the program [pip](https://pypi.python.org/pypi/pip).
+
+```bash
+pip install wwpdb.utils.testing
+
+or from the local repository:
+
+pip install .
+```
+

wwpdb_utils_testing-0.18/pyproject.toml

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+[build-system]
+requires = ["setuptools >= 69"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "wwpdb.utils.testing"
+authors = [
+    {name = "Ezra Peisach", email="ezra.peisach@rcsb.org"}
+]
+description = "wwPDB Python DB Schema Utilities"
+readme = "README.md"
+requires-python = ">=3.6"
+license = {text = "Apache 2.0"}
+classifiers = [
+        "Intended Audience :: Developers",
+        "Natural Language :: English",
+        "License :: OSI Approved :: Apache Software License",
+        "Programming Language :: Python",
+        "Programming Language :: Python :: 2.7",
+        "Programming Language :: Python :: 3",
+        "Programming Language :: Python :: 3.6",
+        "Programming Language :: Python :: 3.7",
+]
+dependencies = []
+dynamic = ["version"]
+
+[project.urls]
+"Homepage" = "https://github,com/wwpdb/py-wwpdb_utils_testing"
+
+[tool.setuptools.packages.find]
+where = ["."]
+exclude = ["wwpdb.utils.tests-*"]
+namespaces = true
+
+[tool.setuptools.dynamic]
+version = {attr = "wwpdb.utils.testing.__version__"}
+
+[tool.setuptools]
+# We turn off the default to not include
+# MANIFEST.in files in wheel - but keep in sdist
+include-package-data = false
+
+[tool.distutils.bdist_wheel]
+universal = true

wwpdb_utils_testing-0.18/requirements.txt

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+# Extra requirements for tox

wwpdb_utils_testing-0.18/setup.cfg

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+[egg_info]
+tag_build = 
+tag_date = 0
+

wwpdb_utils_testing-0.18/tox.ini

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+# File: tox.ini (Templated version)
+
+#
+##
+[local_settings]
+# project specific local settings
+test_pattern = "*Test.py"
+#
+# Source pathls (unquoted and space separated list of files/directories) for linting and format checks
+source_paths = wwpdb/utils/testing wwpdb/utils/tests-testing
+#
+# Start directory path for test discovery
+# Each path must reference valid directory that is searchable by python3.9 (i.e. contains __init__.py)
+#  ** It is harmless to point to paths containing no tests.
+#
+test_path_1 = "wwpdb/utils/tests-testing"
+# These are placeholders valid source directories without tests files
+test_path_2 = "wwpdb/utils/testing"
+test_path_3 = "wwpdb/utils/testing"
+test_path_4 = "wwpdb/utils/testing"
+#
+# Comma separate list of directories/patterns for which test coverage will be evaluated
+coverage_source_paths = "wwpdb/utils/testing,wwpdb/utils/tests-testing"
+# SiteConfig can only be tested when wwpdb.utils.config available
+coverage_exclude_paths = "wwpdb/__init__.py,wwpdb/utils/testing/SiteConfigSetup.py"
+coverage_cutoff = 65
+#
+## --------------------------------------------------------------------------
+##  ----------   No project specific setting beyond this point --------------
+# Updated:  3-Jul-2019 jdw Cleanup
+#           8-Jul-2019 jdw Disable flake8 plugin (pydocstyle compat issue)
+#          12-Jul-2019 jdw Add placeholders for up to four test paths
+#          13-Jul-2019 jdw Add coverage exclusion
+#          21-Nov-2019 jdw py27->py39 update black version
+##
+[tox]
+# The complete list of supported test environments to setup and invoke
+envlist = format_pep8-{py39}, lint_pylint-{py39}, format_black-{py39}, {py39}, test_coverage-{py39}
+#
+minversion = 3.4.0
+skip_missing_interpreters = true
+skipsdist = false
+
+[testenv]
+passenv = CONFIG_SUPPORT_TOKEN_ENV
+allowlist_externals = echo
+deps = 
+commands =
+    echo "Starting default tests in testenv"
+basepython = py313: python3.13
+	 py312: python3.12
+         py311: python3.11
+         py310: python3.10
+         py39: python3.9
+
+[testenv:py3{9,10,11,12,13}]
+description = 'Run unit tests (unittest runner) using {envpython}'
+platform=
+       macos: darwin
+       linux: linux
+skip_install = false
+recreate = true
+#alwayscopy=true
+usedevelop=true
+deps = -r requirements.txt
+commands =
+    echo "Starting {envname}"
+    {envpython} -V
+    {envpython} -m unittest discover -v --start-directory {[local_settings]test_path_1} --pattern "{[local_settings]test_pattern}"
+    {envpython} -m unittest discover -v --start-directory {[local_settings]test_path_2} --pattern "{[local_settings]test_pattern}"
+    {envpython} -m unittest discover -v --start-directory {[local_settings]test_path_3} --pattern "{[local_settings]test_pattern}"
+    {envpython} -m unittest discover -v --start-directory {[local_settings]test_path_4} --pattern "{[local_settings]test_pattern}"
+    echo "Completed {envname}"
+
+
+[testenv:format_pep8-py3{8,9,10,11,12}]
+description = 'Run selected PEP8 compliance checks (flake8)'
+platform=
+       macos: darwin
+       linux: linux
+deps =
+    flake8
+    # This plugin is no longer compatible with latest pydocstyles -
+    # flake8-docstrings>=0.2.7
+    flake8-import-order>=0.9
+    -r requirements.txt
+commands =
+    # Exceptions: D for docstrings, I for imports order and formatting, E302 is slice spacing  - W503 multiline spacing incompatible with black
+    flake8 --max-line-length=185 --ignore=D,I,E203,W503  {[local_settings]source_paths}
+
+#
+[testenv:lint_pylint-py3{9,10,11,12,13}]
+description = 'Run linting compliance checks (pylint)'
+platform=
+       macos: darwin
+       linux: linux
+
+deps =
+    pylint
+    -r requirements.txt
+commands =
+    echo "Starting {envname}"
+    pylint --disable=R,C --reports=n {[local_settings]source_paths}
+    echo "Completed {envname}"
+
+#
+[testenv:format_black-py3{9,10,11,12,13}]
+description = 'Run format compliance checks (black)'
+platform=
+       macos: darwin
+       linux: linux
+deps =
+    black>=19.10b0
+    -r requirements.txt
+    #    isort>=4.3.20
+commands =
+    echo "Starting {envname}"
+    black --check --line-length 180  {[local_settings]source_paths}
+    #    isort -rc rcsb/utils --check-only
+    echo "Completed {envname}"
+
+#
+[testenv:test_coverage-py3{9,10,11,12,13}]
+description = 'Run test coverage analysis'
+platform=
+       macos: darwin
+       linux: linux
+skip_install = false
+recreate = true
+#alwayscopy=true
+usedevelop=true
+deps =
+    coverage
+    -r requirements.txt
+
+commands =
+    echo "Starting {envname}"
+    coverage erase
+    coverage run --parallel-mode --omit="{[local_settings]coverage_exclude_paths}" --source="{[local_settings]coverage_source_paths}" -m unittest discover -v --start-directory  {[local_settings]test_path_1} --pattern "{[local_settings]test_pattern}"
+    coverage run --parallel-mode --omit="{[local_settings]coverage_exclude_paths}"  --source="{[local_settings]coverage_source_paths}" -m unittest discover -v --start-directory  {[local_settings]test_path_2} --pattern "{[local_settings]test_pattern}"
+    coverage run --parallel-mode --omit="{[local_settings]coverage_exclude_paths}"  --source="{[local_settings]coverage_source_paths}" -m unittest discover -v --start-directory  {[local_settings]test_path_3} --pattern "{[local_settings]test_pattern}"
+    coverage run --parallel-mode --omit="{[local_settings]coverage_exclude_paths}"  --source="{[local_settings]coverage_source_paths}" -m unittest discover -v --start-directory  {[local_settings]test_path_4} --pattern "{[local_settings]test_pattern}"
+     echo " ------- Consolidating {envname} data ----------"
+    coverage combine
+    echo " ------- Building {envname} reports ----------"
+    coverage report --fail-under={[local_settings]coverage_cutoff}
+    - coverage xml
+    echo "Completed {envname}"

wwpdb_utils_testing-0.18/wwpdb/mock-data/README.md

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+# py-onedep_mock-data
+Mock data and configuration setup for testing OneDep system
+
+This should contain only public data. When internal data items are
+used, they should be sanitized.