wwpdb.utils.markdown-wrapper 0.3.dev1__tar.gz → 1.0.0__tar.gz

wwpdb_utils_markdown_wrapper-1.0.0/.gitignore

@@ -0,0 +1,110 @@
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# pyenv
+.python-version
+
+# celery beat schedule file
+celerybeat-schedule
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+
+# emacs autosave
+*~
+
+# Test output
+tests/test-output

wwpdb_utils_markdown_wrapper-1.0.0/PKG-INFO

@@ -0,0 +1,28 @@
+Metadata-Version: 2.4
+Name: wwpdb.utils.markdown-wrapper
+Version: 1.0.0
+Summary: wwPDB markdown rendering
+Project-URL: Homepage, https://github.com/wwpdb/py-wwpdb_utils_markdown_wrapper
+Author-email: Ezra Peisach <ezra.peisach@rcsb.org>
+License-Expression: Apache-2.0
+Classifier: Development Status :: 3 - Alpha
+Classifier: Intended Audience :: Developers
+Classifier: License :: OSI Approved :: Apache Software License
+Classifier: Natural Language :: English
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.6
+Classifier: Programming Language :: Python :: 3.7
+Requires-Python: >=3.8
+Requires-Dist: beautifulsoup4
+Requires-Dist: graphviz
+Requires-Dist: markdown~=3.0
+Requires-Dist: pygments
+Provides-Extra: dev
+Requires-Dist: check-manifest; extra == 'dev'
+Provides-Extra: test
+Requires-Dist: mock; extra == 'test'
+Description-Content-Type: text/markdown
+
+# py-wwpdb_utils_markdown_wrapper
+Markdown wrapper for rendering markdown documentation

wwpdb_utils_markdown_wrapper-1.0.0/pyproject.toml

@@ -0,0 +1,125 @@
+[build-system]
+requires = ["hatchling"]
+build-backend = "hatchling.build"
+
+[project]
+name = "wwpdb.utils.markdown-wrapper"
+dynamic = ["version"]
+description = "wwPDB markdown rendering"
+readme = "README.md"
+license = "Apache-2.0"
+authors = [
+    { name = "Ezra Peisach", email = "ezra.peisach@rcsb.org" },
+]
+classifiers = [
+    "Development Status :: 3 - Alpha",
+    "Intended Audience :: Developers",
+    "License :: OSI Approved :: Apache Software License",
+    "Natural Language :: English",
+    "Programming Language :: Python",
+    "Programming Language :: Python :: 3",
+    "Programming Language :: Python :: 3.6",
+    "Programming Language :: Python :: 3.7",
+]
+
+requires-python = ">=3.8"
+
+dependencies = [
+    "beautifulsoup4",
+    "graphviz",
+    "Markdown~=3.0",
+    "pygments",
+]
+
+[project.optional-dependencies]
+dev = [
+    "check-manifest",
+]
+
+test = [
+     "mock"
+]
+
+[project.urls]
+Homepage = "https://github.com/wwpdb/py-wwpdb_utils_markdown_wrapper"
+
+[tool.hatch.version]
+path = "wwpdb/utils/markdown_wrapper/__init__.py"
+
+[tool.hatch.build.targets.sdist]
+include = [
+    "/wwpdb",
+]
+
+[tool.hatch.build.targets.wheel]
+#only-include = ["wwpdb"]
+packages = ["wwpdb"]
+
+
+#
+#=================================== Ruff basics =============================#
+
+line-length = 120 # 120 is hatch's default via 'hatch init'
+include = [
+  "*.py",           # Source
+  "pyproject.toml", # This file (RUF rules only)
+  "*.ipynb",        # Jupyter notebooks
+]
+
+#
+#=================================== Ruff lint ==============================#
+
+[tool.ruff.lint]
+
+#
+# ------------------------- Ruff misc. options ----------------------
+preview = true
+explicit-preview-rules = true
+
+ignore = [
+  "FBT002",   # Boolean default positional argument in function definition
+  "FURB113",  #  Use `stPL.extend(...)` instead of repeatedly calling `stPL.append()`
+  "N801",     # Class name `markdownTests` should use CapWords convention
+  "N802",     # Function name should be lowercase
+  "N803",     # Argument name should be lowercase
+  "N806",     # in function should be lowercase
+  "N816",     # Variable in global scope should not be mixedCase
+  "N999",     # Invalid module name,
+  "PERF401",  # Use a list comprehension to create a transformed list
+  "PLW1514",  # `open` in text mode without explicit `encoding` argument
+  "PT009",    # Use a regular `assert` instead of unittest-style `assertGreater`
+  "RET504",   # Unnecessary assignment to `X` before `return` statement
+  "TRY401",   # Redundant exception object included in `logging.exception` call
+  "UP031"    # Use format specifiers instead of percent format
+#  "UP008",    # Use `super()` instead of `super(__class__, self)`
+]
+
+# -------------------- default environment scripts ------------------
+[tool.hatch.envs.default]
+skip-install = true
+dependencies = ["mypy", "ruff >=0.6.9"]
+
+
+[tool.hatch.envs.default.scripts]
+
+# 'format' formats and fixes issues but does not complain
+format = [
+  "ruff format",
+  "ruff check --fix-only",
+]
+
+# 'format-python' just excludes Prettier
+format-python = ["ruff format", "ruff check --fix-only"]
+
+# 'check' only checks but never fixes
+check = ["ruff check --no-fix .", "mypy --non-interactive --install-types wwpdb tests"]
+
+# only checks with ruff (mypy has a lot of false positives)
+check-ruff = "ruff check --no-fix . {args}"
+
+# to complement 'check-ruff'
+check-mypy = "mypy --non-interactive --install-types wwpdb tests {args}"
+
+# only check security via Bandit; we require these rules to pass
+check-security = "ruff check --select S --no-fix ."
+

{wwpdb.utils.markdown_wrapper-0.3.dev1 → wwpdb_utils_markdown_wrapper-1.0.0}/wwpdb/utils/markdown_wrapper/__init__.py

@@ -2,4 +2,4 @@ __docformat__ = "restructuredtext en"
 __author__ = "John Westbrook"
 __email__ = "john.westbrook@rcsb.org"
 __license__ = "Apache 2.0"
-__version__ = "0.3.dev1"
+__version__ = "1.0.0"

wwpdb_utils_markdown_wrapper-1.0.0/wwpdb/utils/markdown_wrapper/assets/css/markdown/markdown-print.css

@@ -0,0 +1,95 @@
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wwpdb_utils_markdown_wrapper-1.0.0/wwpdb/utils/markdown_wrapper/assets/css/markdown/markdown-screen.css

@@ -0,0 +1,166 @@
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+.codehilite .mh { color: #009999 } /* Literal.Number.Hex */
+.codehilite .mi { color: #009999 } /* Literal.Number.Integer */
+.codehilite .mo { color: #009999 } /* Literal.Number.Oct */
+.codehilite .sb { color: #d01040 } /* Literal.String.Backtick */
+.codehilite .sc { color: #d01040 } /* Literal.String.Char */
+.codehilite .sd { color: #d01040 } /* Literal.String.Doc */
+.codehilite .s2 { color: #d01040 } /* Literal.String.Double */
+.codehilite .se { color: #d01040 } /* Literal.String.Escape */
+.codehilite .sh { color: #d01040 } /* Literal.String.Heredoc */
+.codehilite .si { color: #d01040 } /* Literal.String.Interpol */
+.codehilite .sx { color: #d01040 } /* Literal.String.Other */
+.codehilite .sr { color: #009926 } /* Literal.String.Regex */
+.codehilite .s1 { color: #d01040 } /* Literal.String.Single */
+.codehilite .ss { color: #990073 } /* Literal.String.Symbol */
+.codehilite .bp { color: #999999 } /* Name.Builtin.Pseudo */
+.codehilite .vc { color: #008080 } /* Name.Variable.Class */
+.codehilite .vg { color: #008080 } /* Name.Variable.Global */
+.codehilite .vi { color: #008080 } /* Name.Variable.Instance */
+.codehilite .il { color: #009999 } /* Literal.Number.Integer.Long */