worph 0.1.5__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- worph-0.1.5/.ci_shims/morph_kgc/__init__.py +1 -0
- worph-0.1.5/.ci_shims/morph_kgc/__main__.py +3 -0
- worph-0.1.5/.github/workflows/ci.yml +153 -0
- worph-0.1.5/.gitignore +10 -0
- worph-0.1.5/AGENTS.md +93 -0
- worph-0.1.5/LICENSE +202 -0
- worph-0.1.5/PKG-INFO +120 -0
- worph-0.1.5/README.md +102 -0
- worph-0.1.5/TODO.md +56 -0
- worph-0.1.5/assets/worph-logo.png +0 -0
- worph-0.1.5/docs/README.md +11 -0
- worph-0.1.5/docs/compatibility-shims.md +28 -0
- worph-0.1.5/examples/README.md +48 -0
- worph-0.1.5/examples/configuration-file/basic_config.ini +3 -0
- worph-0.1.5/examples/configuration-file/default_config.ini +27 -0
- worph-0.1.5/examples/csv/config.ini +2 -0
- worph-0.1.5/examples/csv/data/AGENCY.csv +2 -0
- worph-0.1.5/examples/csv/data/CALENDAR.csv +6 -0
- worph-0.1.5/examples/csv/data/CALENDAR_DATES.csv +15 -0
- worph-0.1.5/examples/csv/data/FEED_INFO.csv +2 -0
- worph-0.1.5/examples/csv/data/FREQUENCIES.csv +51 -0
- worph-0.1.5/examples/csv/data/ROUTES.csv +14 -0
- worph-0.1.5/examples/csv/data/SHAPES.csv +68 -0
- worph-0.1.5/examples/csv/data/STOPS.csv +37 -0
- worph-0.1.5/examples/csv/data/STOP_TIMES.csv +41 -0
- worph-0.1.5/examples/csv/data/TRIPS.csv +40 -0
- worph-0.1.5/examples/csv/mapping.csv.yml +238 -0
- worph-0.1.5/examples/dataframe/kg_generation.py +66 -0
- worph-0.1.5/examples/dataframe/mapping.rml.ttl +96 -0
- worph-0.1.5/examples/dict/kg_generation.py +68 -0
- worph-0.1.5/examples/dict/mapping.rml.ttl +97 -0
- worph-0.1.5/examples/dynamic_api_token.py +59 -0
- worph-0.1.5/examples/json/config.ini +3 -0
- worph-0.1.5/examples/json/data.json +114 -0
- worph-0.1.5/examples/json/mapping.json.yaml +65 -0
- worph-0.1.5/examples/postgres/config.ini +3 -0
- worph-0.1.5/examples/postgres/example.db +0 -0
- worph-0.1.5/examples/postgres/mapping.ttl +22 -0
- worph-0.1.5/examples/rdb/config.ini +3 -0
- worph-0.1.5/examples/rdb/gtfs.db +0 -0
- worph-0.1.5/examples/rdb/mapping.rdb.yml +251 -0
- worph-0.1.5/examples/s3_parquet/config.ini +3 -0
- worph-0.1.5/examples/s3_parquet/data.parquet +0 -0
- worph-0.1.5/examples/s3_parquet/mapping.ttl +21 -0
- worph-0.1.5/examples/tutorial/Morph-KGC.ipynb +1 -0
- worph-0.1.5/examples/tutorial/README.md +5 -0
- worph-0.1.5/examples/tutorial/mapping.gtfs.ttl +960 -0
- worph-0.1.5/examples/tutorial/mapping.somef.ttl +916 -0
- worph-0.1.5/examples/tutorial/oeg-upm_morph-kgc.json +488 -0
- worph-0.1.5/examples/xml/config.ini +3 -0
- worph-0.1.5/examples/xml/data.xml +117 -0
- worph-0.1.5/examples/xml/mapping.xml.yaml +65 -0
- worph-0.1.5/pyproject.toml +29 -0
- worph-0.1.5/specs/COMPATIBILITY.md +21 -0
- worph-0.1.5/specs/agents/gh-expert.md +15 -0
- worph-0.1.5/specs/agents/oop-gof-expert.md +15 -0
- worph-0.1.5/specs/agents/python-expert.md +15 -0
- worph-0.1.5/specs/agents/reviewer.md +15 -0
- worph-0.1.5/specs/agents/yarrrml-rml-rdf-xpath-expert.md +15 -0
- worph-0.1.5/specs/dos-and-donts.md +12 -0
- worph-0.1.5/specs/lessons-learned.md +17 -0
- worph-0.1.5/specs/playbooks/rewrite-v2-playbook.md +46 -0
- worph-0.1.5/specs/playbooks/run_rewrite_v2_playbook.sh +146 -0
- worph-0.1.5/specs/reimplementation-baseline.md +42 -0
- worph-0.1.5/specs/reimplementation-scope-matrix.md +30 -0
- worph-0.1.5/src/sitecustomize.py +69 -0
- worph-0.1.5/src/sql_metadata.py +25 -0
- worph-0.1.5/src/worph/__init__.py +172 -0
- worph-0.1.5/src/worph/__main__.py +37 -0
- worph-0.1.5/src/worph/core/__init__.py +14 -0
- worph-0.1.5/src/worph/core/config.py +119 -0
- worph-0.1.5/src/worph/core/emitter.py +86 -0
- worph-0.1.5/src/worph/core/loader.py +36 -0
- worph-0.1.5/src/worph/core/model.py +71 -0
- worph-0.1.5/src/worph/core/rml_parser.py +466 -0
- worph-0.1.5/src/worph/core/sources.py +678 -0
- worph-0.1.5/src/worph/core/term_map.py +91 -0
- worph-0.1.5/src/worph/core/yarrrml.py +393 -0
- worph-0.1.5/src/worph/fnml/__init__.py +12 -0
- worph-0.1.5/src/worph/fnml/built_in_functions.py +1357 -0
- worph-0.1.5/src/worph/fnml/engine.py +58 -0
- worph-0.1.5/src/worph/fnml/evaluator.py +32 -0
- worph-0.1.5/src/worph/fnml/registry.py +183 -0
- worph-0.1.5/src/worph/materializer.py +377 -0
- worph-0.1.5/test/geoparquet/RMLTC0001a/data.parquet +0 -0
- worph-0.1.5/test/geoparquet/RMLTC0001a/expected.nt +6 -0
- worph-0.1.5/test/geoparquet/RMLTC0001a/mapping.ttl +32 -0
- worph-0.1.5/test/geoparquet/RMLTC0001a/test_RMLTC0001a_GEOPARQUET.py +21 -0
- worph-0.1.5/test/geoparquet/RMLTC0001b/ENVIRO_AUDIT_POINT_sample.parquet +0 -0
- worph-0.1.5/test/geoparquet/RMLTC0001b/audit_mapping.yaml +54 -0
- worph-0.1.5/test/geoparquet/RMLTC0001b/audit_mapping_fixed.yaml +35 -0
- worph-0.1.5/test/geoparquet/RMLTC0001b/audit_mapping_geoparquet.yaml +34 -0
- worph-0.1.5/test/geoparquet/RMLTC0001b/audit_mapping_simple.yaml +36 -0
- worph-0.1.5/test/geoparquet/RMLTC0001b/config.ini +3 -0
- worph-0.1.5/test/geoparquet/RMLTC0001b/config_fixed.ini +3 -0
- worph-0.1.5/test/geoparquet/RMLTC0001b/config_geoparquet.ini +3 -0
- worph-0.1.5/test/geoparquet/RMLTC0001b/config_simple.ini +3 -0
- worph-0.1.5/test/geoparquet/generate_data.py +16 -0
- worph-0.1.5/test/issues/issue_118/mapping.ttl +40 -0
- worph-0.1.5/test/issues/issue_118/output.nq +1 -0
- worph-0.1.5/test/issues/issue_118/premis.xml +23 -0
- worph-0.1.5/test/issues/issue_118/test_issue_118.py +26 -0
- worph-0.1.5/test/issues/issue_124/data.csv +2 -0
- worph-0.1.5/test/issues/issue_124/mapping.ttl +63 -0
- worph-0.1.5/test/issues/issue_124/output.nq +10 -0
- worph-0.1.5/test/issues/issue_124/test_issue_124.py +26 -0
- worph-0.1.5/test/issues/issue_145/data.csv +3 -0
- worph-0.1.5/test/issues/issue_145/mapping.ttl +51 -0
- worph-0.1.5/test/issues/issue_145/output.nq +2 -0
- worph-0.1.5/test/issues/issue_145/test_issue_145.py +24 -0
- worph-0.1.5/test/issues/issue_174/data-1.csv +2 -0
- worph-0.1.5/test/issues/issue_174/data-2.csv +3 -0
- worph-0.1.5/test/issues/issue_174/mapping-a.ttl +58 -0
- worph-0.1.5/test/issues/issue_174/mapping-b.ttl +53 -0
- worph-0.1.5/test/issues/issue_174/mapping-c.ttl +52 -0
- worph-0.1.5/test/issues/issue_174/output-a.nq +6 -0
- worph-0.1.5/test/issues/issue_174/output-b.nq +6 -0
- worph-0.1.5/test/issues/issue_174/output-c.nq +6 -0
- worph-0.1.5/test/issues/issue_174/test_issue_174.py +46 -0
- worph-0.1.5/test/issues/issue_243/data.csv +2 -0
- worph-0.1.5/test/issues/issue_243/mapping.yml +12 -0
- worph-0.1.5/test/issues/issue_243/output.nq +2 -0
- worph-0.1.5/test/issues/issue_243/test_issue_243.py +24 -0
- worph-0.1.5/test/issues/issue_254/data-1.csv +2 -0
- worph-0.1.5/test/issues/issue_254/data-2.csv +2 -0
- worph-0.1.5/test/issues/issue_254/mapping.yml +47 -0
- worph-0.1.5/test/issues/issue_254/output.nq +2 -0
- worph-0.1.5/test/issues/issue_254/test_issue_254.py +25 -0
- worph-0.1.5/test/issues/issue_316/a.json +5 -0
- worph-0.1.5/test/issues/issue_316/b.json +6 -0
- worph-0.1.5/test/issues/issue_316/mapping.ttl +44 -0
- worph-0.1.5/test/issues/issue_316/output.nq +1 -0
- worph-0.1.5/test/issues/issue_316/test_issue_316.py +55 -0
- worph-0.1.5/test/issues/issue_316/udfs.py +25 -0
- worph-0.1.5/test/issues/issue_328/cars.csv +3 -0
- worph-0.1.5/test/issues/issue_328/mapping.yarrrml +13 -0
- worph-0.1.5/test/issues/issue_328/test_prefixes_yarrrml.py +19 -0
- worph-0.1.5/test/issues/issue_350/config.ini +6 -0
- worph-0.1.5/test/issues/issue_350/data.csv +3 -0
- worph-0.1.5/test/issues/issue_350/mapping.ttl +22 -0
- worph-0.1.5/test/issues/issue_350/output.nt +4 -0
- worph-0.1.5/test/issues/issue_350/test_issue_350.py +122 -0
- worph-0.1.5/test/issues/issue_62/data1.csv +4 -0
- worph-0.1.5/test/issues/issue_62/data2.csv +4 -0
- worph-0.1.5/test/issues/issue_62/mapping.ttl +37 -0
- worph-0.1.5/test/issues/issue_62/output.nq +6 -0
- worph-0.1.5/test/issues/issue_62/test_issue_62.py +24 -0
- worph-0.1.5/test/issues/issue_67/data.csv +2 -0
- worph-0.1.5/test/issues/issue_67/mapping.ttl +34 -0
- worph-0.1.5/test/issues/issue_67/output.nq +3 -0
- worph-0.1.5/test/issues/issue_67/test_issue_67.py +24 -0
- worph-0.1.5/test/issues/issue_80/mapping.rml +27 -0
- worph-0.1.5/test/issues/issue_80/output.nq +2 -0
- worph-0.1.5/test/issues/issue_80/student.csv +2 -0
- worph-0.1.5/test/issues/issue_80/test_issue_80.py +24 -0
- worph-0.1.5/test/issues/issue_81/country_info.csv +4 -0
- worph-0.1.5/test/issues/issue_81/mapping.ttl +21 -0
- worph-0.1.5/test/issues/issue_81/output.nq +4 -0
- worph-0.1.5/test/issues/issue_81/test_issue_81.py +24 -0
- worph-0.1.5/test/issues/test_yarrrml_condition_matrix.py +109 -0
- worph-0.1.5/test/issues/test_yarrrml_source_multi_source_contract.py +98 -0
- worph-0.1.5/test/r2rml/R2RMLTC0000/mapping.ttl +19 -0
- worph-0.1.5/test/r2rml/R2RMLTC0000/output.nq +1 -0
- worph-0.1.5/test/r2rml/R2RMLTC0000/resource.db +0 -0
- worph-0.1.5/test/r2rml/R2RMLTC0000/resource.sql +3 -0
- worph-0.1.5/test/r2rml/R2RMLTC0000/test_R2RMLTC0000_SQLITE.py +25 -0
- worph-0.1.5/test/r2rml/R2RMLTC0001a/mapping.ttl +19 -0
- worph-0.1.5/test/r2rml/R2RMLTC0001a/output.nq +1 -0
- worph-0.1.5/test/r2rml/R2RMLTC0001a/resource.db +0 -0
- worph-0.1.5/test/r2rml/R2RMLTC0001a/resource.sql +4 -0
- worph-0.1.5/test/r2rml/R2RMLTC0001a/test_R2RMLTC0001a_SQLITE.py +25 -0
- worph-0.1.5/test/r2rml/R2RMLTC0001b/mapping.ttl +19 -0
- worph-0.1.5/test/r2rml/R2RMLTC0001b/output.nq +1 -0
- worph-0.1.5/test/r2rml/R2RMLTC0001b/resource.db +0 -0
- worph-0.1.5/test/r2rml/R2RMLTC0001b/resource.sql +4 -0
- worph-0.1.5/test/r2rml/R2RMLTC0001b/test_R2RMLTC0001b_SQLITE.py +24 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002a/mapping.ttl +26 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002a/output.nq +3 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002a/resource.db +0 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002a/resource.sql +5 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002a/test_R2RMLTC0002a_SQLITE.py +25 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002b/mapping.ttl +19 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002b/output.nq +1 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002b/resource.db +0 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002b/resource.sql +5 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002b/test_R2RMLTC0002b_SQLITE.py +24 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002c/mapping.ttl +20 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002c/output.nq +0 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002c/resource.db +0 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002c/resource.sql +5 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002c/test_R2RMLTC0002c_SQLITE.py +24 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002d/mapping.ttl +26 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002d/output.nq +1 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002d/resource.db +0 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002d/resource.sql +5 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002d/test_R2RMLTC0002d_SQLITE.py +25 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002e/mapping.ttl +20 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002e/resource.db +0 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002e/resource.sql +5 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002e/test_R2RMLTC0002e_SQLITE.py +24 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002f/mapping.ttl +26 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002f/resource.db +0 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002f/resource.sql +5 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002f/test_R2RMLTC0002f_SQLITE.py +24 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002g/mapping.ttl +23 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002g/output.nq +0 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002g/resource.db +0 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002g/resource.sql +5 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002g/test_R2RMLTC0002g_SQLITE.py +24 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002h/mapping.ttl +28 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002h/output.nq +0 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002h/resource.db +0 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002h/resource.sql +5 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002h/test_R2RMLTC0002h_SQLITE.py +24 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002i/mapping.ttl +30 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002i/output.nq +1 -0
- worph-0.1.5/test/r2rml/R2RMLTC0002i/resource.db +0 -0
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- worph-0.1.5/test/r2rml/R2RMLTC0002j/mapping.ttl +24 -0
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- worph-0.1.5/test/r2rml/R2RMLTC0003a/R2RMLTC0003a_SQLITE.py +25 -0
- worph-0.1.5/test/r2rml/R2RMLTC0003a/mapping.ttl +28 -0
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- worph-0.1.5/test/r2rml/R2RMLTC0003b/mapping.ttl +25 -0
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- worph-0.1.5/test/r2rml/R2RMLTC0003c/mapping.ttl +19 -0
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- worph-0.1.5/test/r2rml/R2RMLTC0003c/test_R2RMLTC0003c_SQLITE.py +25 -0
- worph-0.1.5/test/r2rml/R2RMLTC0004a/mapping.ttl +35 -0
- worph-0.1.5/test/r2rml/R2RMLTC0004a/output.nq +4 -0
- worph-0.1.5/test/r2rml/R2RMLTC0004a/resource.db +0 -0
- worph-0.1.5/test/r2rml/R2RMLTC0004a/resource.sql +5 -0
- worph-0.1.5/test/r2rml/R2RMLTC0004a/student_sport.csv +2 -0
- worph-0.1.5/test/r2rml/R2RMLTC0004a/test_R2RMLTC0004a_SQLITE.py +25 -0
- worph-0.1.5/test/r2rml/R2RMLTC0004b/mapping.ttl +25 -0
- worph-0.1.5/test/r2rml/R2RMLTC0004b/output.nq +1 -0
- worph-0.1.5/test/r2rml/R2RMLTC0004b/resource.db +0 -0
- worph-0.1.5/test/r2rml/R2RMLTC0004b/resource.sql +5 -0
- worph-0.1.5/test/r2rml/R2RMLTC0004b/test_R2RMLTC0004b_SQLITE.py +24 -0
- worph-0.1.5/test/r2rml/R2RMLTC0005a/mapping.ttl +21 -0
- worph-0.1.5/test/r2rml/R2RMLTC0005a/output.nq +4 -0
- worph-0.1.5/test/r2rml/R2RMLTC0005a/resource.db +0 -0
- worph-0.1.5/test/r2rml/R2RMLTC0005a/resource.sql +7 -0
- worph-0.1.5/test/r2rml/R2RMLTC0005a/test_R2RMLTC0005a_SQLITE.py +25 -0
- worph-0.1.5/test/r2rml/R2RMLTC0005b/mapping.ttl +33 -0
- worph-0.1.5/test/r2rml/R2RMLTC0005b/output.nq +8 -0
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- worph-0.1.5/test/rml-tv/RMLTVTC0011a/test_RMLTVTC0011a.py +24 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0014d/dept.csv +2 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0014d/emp.csv +2 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0014d/likes.csv +3 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0014d/mapping.ttl +21 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0014d/output.nq +1 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0014d/test_RMLTVTC0014d.py +24 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0015a/country.csv +5 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0015a/mapping.ttl +39 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0015a/output.nq +6 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0015a/test_RMLTVTC0015a.py +24 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0015b/country.csv +5 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0015b/mapping.ttl +39 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0015b/test_RMLTVTC0015b.py +23 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0019a/employee.csv +4 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0019a/mapping.ttl +20 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0019a/output.nq +1 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0019a/test_RMLTVTC0019a.py +24 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0026a/mapping.ttl +19 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0026a/mixed_content_list.csv +5 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0026a/output.nq +5 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0026a/test_RMLTVTC0026a.py +24 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0027a/mapping.ttl +23 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0027a/mixed_content_json.csv +3 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0027a/output.nq +6 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0027a/test_RMLTVTC0027a.py +24 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0028a/aka_title.csv +3 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0028a/mapping.ttl +27 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0028a/output.nq +4 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0028a/test_RMLTVTC0028a.py +24 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0028a/title.csv +2 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0029a/department.csv +3 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0029a/faculty.csv +3 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0029a/graduatecourse.csv +3 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0029a/mapping.ttl +17 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0029a/output.nq +2 -0
- worph-0.1.5/test/rml-tv/RMLTVTC0029a/test_RMLTVTC0029a.py +24 -0
- worph-0.1.5/test/shapefile/RMLTC0001a/data.cpg +1 -0
- worph-0.1.5/test/shapefile/RMLTC0001a/data.dbf +0 -0
- worph-0.1.5/test/shapefile/RMLTC0001a/data.shp +0 -0
- worph-0.1.5/test/shapefile/RMLTC0001a/data.shx +0 -0
- worph-0.1.5/test/shapefile/RMLTC0001a/expected.nt +6 -0
- worph-0.1.5/test/shapefile/RMLTC0001a/mapping.yaml +12 -0
- worph-0.1.5/test/shapefile/RMLTC0001a/test_RMLTC0001a_SHP.py +21 -0
- worph-0.1.5/test/test_ci_shim_uses_worph.py +34 -0
- worph-0.1.5/test/test_public_api_contract.py +27 -0
- worph-0.1.5/test/test_runtime_config_paths.py +59 -0
- worph-0.1.5/uv.lock +1044 -0
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from worph import *
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name: CI
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on:
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push:
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branches:
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- main
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tags:
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pull_request:
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jobs:
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test-and-examples:
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steps:
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- name: Setup Python
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uses: actions/setup-python@v5
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with:
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python-version: "3.12"
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- name: Setup uv
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uses: astral-sh/setup-uv@v5
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- name: Install dependencies
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run: |
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uv sync --extra test
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uv pip install pandas pyarrow
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- name: Install package
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run: uv pip install -e .
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- name: Create CI compatibility shim (morph_kgc -> worph)
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run: |
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mkdir -p .ci_shims/morph_kgc
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cat > .ci_shims/morph_kgc/__init__.py <<'PY'
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from worph import *
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PY
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cat > .ci_shims/morph_kgc/__main__.py <<'PY'
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from worph.__main__ import main
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if __name__ == "__main__":
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raise SystemExit(main())
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PY
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- name: Run all tests
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env:
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PYTHONPATH: .ci_shims:src
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run: |
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uv run pytest -q
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- name: Prepare example fixtures
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run: |
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uv run python - <<'PY'
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import sqlite3
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import pandas as pd
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# postgres example local sqlite DB
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con = sqlite3.connect(pdb)
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con.execute("CREATE TABLE postgres_tablename (id TEXT)")
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con.executemany("INSERT INTO postgres_tablename (id) VALUES (?)", [("1",), ("2",), ("3",)])
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con.commit()
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# rdb example local sqlite DB built from CSV sample files
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gdb = Path("examples/rdb/gtfs.db")
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if gdb.exists():
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gdb.unlink()
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con = sqlite3.connect(gdb)
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base = Path("examples/csv/data")
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for name in [
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"STOP_TIMES",
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"TRIPS",
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"ROUTES",
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"AGENCY",
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"STOPS",
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"CALENDAR",
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"CALENDAR_DATES",
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"FEED_INFO",
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"SHAPES",
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"FREQUENCIES",
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]:
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csv_path = base / f"{name}.csv"
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if csv_path.exists():
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df = pd.read_csv(csv_path)
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df.to_sql(name, con, index=False, if_exists="replace")
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con.close()
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# s3_parquet example local parquet file
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parquet_path = Path("examples/s3_parquet/data.parquet")
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parquet_path.parent.mkdir(parents=True, exist_ok=True)
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pd.DataFrame({"id": [1, 2, 3]}).to_parquet(parquet_path, index=False)
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PY
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- name: Run example matrix
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env:
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PYTHONPATH: .ci_shims:src
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run: |
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set -euo pipefail
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run_example() {
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name="$1"
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shift
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echo "== $name =="
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"$@"
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}
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run_example "csv-config" uv run python -m worph examples/csv/config.ini
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run_example "json-config" uv run python -m worph examples/json/config.ini
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run_example "xml-config" uv run python -m worph examples/xml/config.ini
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run_example "postgres-config" uv run python -m worph examples/postgres/config.ini
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run_example "rdb-config" bash -lc 'cd examples/rdb && uv run python -m worph config.ini'
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run_example "s3-parquet-config" uv run python -m worph examples/s3_parquet/config.ini
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run_example "dataframe-script" uv run python examples/dataframe/kg_generation.py
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run_example "dict-script" uv run python examples/dict/kg_generation.py
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run_example "dynamic-api-token" uv run python examples/dynamic_api_token.py
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publish:
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if: startsWith(github.ref, 'refs/tags/')
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needs: test-and-examples
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runs-on: ubuntu-latest
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timeout-minutes: 20
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permissions:
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id-token: write
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contents: read
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|
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steps:
|
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- name: Checkout
|
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uses: actions/checkout@v4
|
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|
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- name: Setup Python
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uses: actions/setup-python@v5
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with:
|
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python-version: "3.12"
|
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|
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- name: Setup uv
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uses: astral-sh/setup-uv@v5
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- name: Build package
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run: uv build
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- name: Publish to PyPI
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uses: pypa/gh-action-pypi-publish@release/v1
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with:
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print-hash: true
|
worph-0.1.5/.gitignore
ADDED
worph-0.1.5/AGENTS.md
ADDED
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@@ -0,0 +1,93 @@
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|
1
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# AGENTS.md
|
|
2
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|
|
3
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Repository-level instructions for agents working in `worph`.
|
|
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|
|
5
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## Scope and Precedence
|
|
6
|
+
|
|
7
|
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- This file applies to the whole repository.
|
|
8
|
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- These rules override higher-level defaults when they conflict.
|
|
9
|
+
|
|
10
|
+
## Required Context Discovery
|
|
11
|
+
|
|
12
|
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Before proposing or implementing changes:
|
|
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|
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|
|
14
|
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1. Read [README.md](README.md).
|
|
15
|
+
2. Read [CONTRIBUTING.md](CONTRIBUTING.md) if present.
|
|
16
|
+
3. Inspect [pyproject.toml](pyproject.toml) for dependencies and extras.
|
|
17
|
+
4. Inspect the relevant area under `src/worph/` and matching tests under `test/`.
|
|
18
|
+
5. If present and relevant, read `specs/lessons-learned.md`.
|
|
19
|
+
|
|
20
|
+
Do not change code before understanding the local module boundaries and nearby tests.
|
|
21
|
+
|
|
22
|
+
## Project Layout and Boundaries
|
|
23
|
+
|
|
24
|
+
- Python package code lives in `src/worph/`.
|
|
25
|
+
- Main entry points:
|
|
26
|
+
- CLI: `src/worph/__main__.py`
|
|
27
|
+
- Public API: `src/worph/__init__.py`
|
|
28
|
+
- Materialization flow: `src/worph/materializer.py`
|
|
29
|
+
- Core submodules:
|
|
30
|
+
- `core/`: configuration, mapping parsing, source loading, term maps, and emitters.
|
|
31
|
+
- `fnml/`: FNML built-ins and execution.
|
|
32
|
+
|
|
33
|
+
Respect these boundaries. Keep orchestration in `materializer`, parsing/loading in `core`, and function execution logic in `fnml`.
|
|
34
|
+
|
|
35
|
+
## Build, Environment, and Dependency Rules
|
|
36
|
+
|
|
37
|
+
- Build backend: `hatchling` (configured in `pyproject.toml`).
|
|
38
|
+
- Preferred environment manager: `uv`.
|
|
39
|
+
- Install for development/testing:
|
|
40
|
+
- `uv sync` when lock/config supports it, otherwise:
|
|
41
|
+
- `uv pip install -e '.[test]'`
|
|
42
|
+
- Fallback if `uv` is unavailable: `pip install -e '.[test]'`
|
|
43
|
+
- Do not add new dependencies unless the user explicitly approves.
|
|
44
|
+
|
|
45
|
+
## Testing and Verification
|
|
46
|
+
|
|
47
|
+
- Test framework: `pytest`.
|
|
48
|
+
- Start with smallest relevant scope:
|
|
49
|
+
- Single test file or directory under `test/...`
|
|
50
|
+
- Expand only if required by impact.
|
|
51
|
+
- Typical commands:
|
|
52
|
+
- `uv run pytest test/<area>/<case>/test_*.py`
|
|
53
|
+
- `uv run pytest test/issues/issue_<n>`
|
|
54
|
+
- `PYTHONPATH=.ci_shims:src uv run pytest -q` (compat mode/full suite)
|
|
55
|
+
- `uv run pytest` (full suite, non-shim mode)
|
|
56
|
+
- For behavior changes, update/add tests in the closest existing test area.
|
|
57
|
+
- Do not claim completion without reporting what tests were run and their results.
|
|
58
|
+
|
|
59
|
+
## Change Discipline
|
|
60
|
+
|
|
61
|
+
- Keep patches minimal and focused; avoid unrelated refactors.
|
|
62
|
+
- Preserve existing coding style and naming in touched files.
|
|
63
|
+
- Reuse existing helpers/utilities before introducing new abstractions.
|
|
64
|
+
- Avoid architecture changes unless explicitly requested.
|
|
65
|
+
- Do not modify unrelated files.
|
|
66
|
+
- In specs/docs, use relative paths only. Do not use absolute paths.
|
|
67
|
+
|
|
68
|
+
## Repository Subagents (`specs/agents`)
|
|
69
|
+
|
|
70
|
+
- Use only the minimum specialist set needed for the task.
|
|
71
|
+
- Keep the loaded agent set small (max 3 specialists for most tasks).
|
|
72
|
+
- Default specialist pair when uncertain: `python-expert` + `reviewer`.
|
|
73
|
+
- Available specialist briefs live in `specs/agents/`:
|
|
74
|
+
- `python-expert.md`
|
|
75
|
+
- `oop-gof-expert.md`
|
|
76
|
+
- `yarrrml-rml-rdf-xpath-expert.md`
|
|
77
|
+
- `gh-expert.md`
|
|
78
|
+
- `reviewer.md`
|
|
79
|
+
|
|
80
|
+
## Safety and Git Rules
|
|
81
|
+
|
|
82
|
+
- Never use destructive git commands (for example `git reset --hard`) unless explicitly requested.
|
|
83
|
+
- Do not push, open PRs, or rewrite history unless explicitly instructed.
|
|
84
|
+
- If unexpected repository changes appear while working, stop and ask how to proceed.
|
|
85
|
+
|
|
86
|
+
## Communication Expectations
|
|
87
|
+
|
|
88
|
+
At task completion, report:
|
|
89
|
+
|
|
90
|
+
1. What was changed.
|
|
91
|
+
2. Which files were modified.
|
|
92
|
+
3. Which tests were run and outcomes.
|
|
93
|
+
4. Any residual risks or follow-up work.
|
worph-0.1.5/LICENSE
ADDED
|
@@ -0,0 +1,202 @@
|
|
|
1
|
+
|
|
2
|
+
Apache License
|
|
3
|
+
Version 2.0, January 2004
|
|
4
|
+
http://www.apache.org/licenses/
|
|
5
|
+
|
|
6
|
+
TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
|
|
7
|
+
|
|
8
|
+
1. Definitions.
|
|
9
|
+
|
|
10
|
+
"License" shall mean the terms and conditions for use, reproduction,
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worph-0.1.5/PKG-INFO
ADDED
|
@@ -0,0 +1,120 @@
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Metadata-Version: 2.4
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Name: worph
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Version: 0.1.5
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Summary: Rewrite baseline for Morph-KGC v2
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License-File: LICENSE
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Requires-Python: >=3.10
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Requires-Dist: morph-kgc<3.0.0,>=2.10.0
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Requires-Dist: odfpy<2.0.0,>=1.4.0
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Requires-Dist: openpyxl<4.0.0,>=3.1.0
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Requires-Dist: pyarrow<100.0.0,>=17.0.0
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Requires-Dist: pyshp<4.0.0,>=2.3.0
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Requires-Dist: pyyaml<7.0.0,>=6.0.0
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Requires-Dist: shapely<3.0.0,>=2.0.0
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Requires-Dist: sqlalchemy<3.0.0,>=2.0.0
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Provides-Extra: test
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Requires-Dist: pytest<9.0.0,>=8.0.0; extra == 'test'
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Description-Content-Type: text/markdown
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<p align="center">
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<img src="assets/worph-logo.png" alt="worph logo" width="180">
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</p>
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# worph
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[](https://github.com/wordlift/worph/actions/workflows/ci.yml)
|
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[](https://pypi.org/project/worph/)
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[](https://github.com/wordlift/worph/blob/main/pyproject.toml)
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[](LICENSE)
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`worph` is a public project at [`wordlift/worph`](https://github.com/wordlift/worph), forked from [`morph-kgc`](https://github.com/morph-kgc/morph-kgc). It keeps compatibility with retained `morph_kgc` imports while evolving the primary implementation under `src/worph/`.
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## Table of Contents
|
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|
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- [Overview](#overview)
|
|
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- [Repository Layout](#repository-layout)
|
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- [Quick Start](#quick-start)
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- [CLI Commands](#cli-commands)
|
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- [Testing](#testing)
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- [Compatibility](#compatibility)
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- [Documentation](#documentation)
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- [Release](#release)
|
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- [License](#license)
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## Overview
|
|
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|
|
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|
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`worph` provides RML/YARRRML materialization flows with compatibility for existing `morph_kgc` consumers. The codebase includes regression suites and compatibility shims used in CI to validate behavior against retained tests.
|
|
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|
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|
|
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## Repository Layout
|
|
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|
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|
|
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|
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- `src/worph/`: primary package implementation
|
|
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|
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- `.ci_shims/morph_kgc/`: compatibility shim re-exporting from `worph`
|
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- `test/`: regression and issue-driven test suites
|
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- `examples/`: runnable configs and sample scripts
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- `specs/`: compatibility, playbook, and agent-guidance documents
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- `specs/agents/`: specialist subagent briefs used during planning/review
|
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- `docs/`: operational documentation
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|
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## Quick Start
|
|
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|
+
|
|
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|
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```bash
|
|
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uv sync --extra test
|
|
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uv run python -m worph examples/csv/config.ini
|
|
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```
|
|
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|
|
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## CLI Commands
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Run using the package entrypoint:
|
|
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|
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|
|
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```bash
|
|
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uv run worph examples/json/config.ini
|
|
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```
|
|
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|
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|
|
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Equivalent module form:
|
|
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|
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|
|
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|
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```bash
|
|
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|
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uv run python -m worph examples/xml/config.ini
|
|
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|
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```
|
|
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|
+
|
|
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## Testing
|
|
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|
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Run full CI-aligned tests with shim compatibility enabled:
|
|
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|
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|
|
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```bash
|
|
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|
+
PYTHONPATH=.ci_shims:src uv run pytest -q
|
|
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|
+
```
|
|
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|
|
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|
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Run the explicit shim validation test:
|
|
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|
+
|
|
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|
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```bash
|
|
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|
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PYTHONPATH=.ci_shims:src uv run pytest -q test/test_ci_shim_uses_worph.py
|
|
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|
+
```
|
|
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|
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|
|
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|
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## Compatibility
|
|
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|
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|
|
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|
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Some retained tests still import `morph_kgc`. CI sets `PYTHONPATH=.ci_shims:src` so imports resolve to `.ci_shims/morph_kgc` first, then delegate to `worph`.
|
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|
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|
|
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## Documentation
|
|
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|
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- [docs/compatibility-shims.md](docs/compatibility-shims.md)
|
|
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- [specs/COMPATIBILITY.md](specs/COMPATIBILITY.md)
|
|
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- [specs/lessons-learned.md](specs/lessons-learned.md)
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## Release
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Publishing to PyPI is handled inside `.github/workflows/ci.yml`.
|
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- Trigger: push a version tag like `0.1.5` or `v0.1.5`
|
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- Gate: `publish` job runs only after `test-and-examples` succeeds
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- Auth: PyPI Trusted Publisher (OIDC)
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Trusted Publisher settings on `pypi.org`:
|
|
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|
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- Owner: `wordlift`
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- Repository: `worph`
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- Workflow name: `ci.yml`
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- Environment: empty (unless you add one in GitHub)
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## License
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All code and documentation in this repository are licensed under the Apache License 2.0.
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<p align="center">
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<img src="assets/worph-logo.png" alt="worph logo" width="180">
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</p>
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# worph
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[](https://github.com/wordlift/worph/actions/workflows/ci.yml)
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[](https://pypi.org/project/worph/)
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[](https://github.com/wordlift/worph/blob/main/pyproject.toml)
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[](LICENSE)
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`worph` is a public project at [`wordlift/worph`](https://github.com/wordlift/worph), forked from [`morph-kgc`](https://github.com/morph-kgc/morph-kgc). It keeps compatibility with retained `morph_kgc` imports while evolving the primary implementation under `src/worph/`.
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## Table of Contents
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- [Overview](#overview)
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- [Repository Layout](#repository-layout)
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- [Quick Start](#quick-start)
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- [CLI Commands](#cli-commands)
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- [Testing](#testing)
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- [Compatibility](#compatibility)
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- [Documentation](#documentation)
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- [Release](#release)
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- [License](#license)
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## Overview
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`worph` provides RML/YARRRML materialization flows with compatibility for existing `morph_kgc` consumers. The codebase includes regression suites and compatibility shims used in CI to validate behavior against retained tests.
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## Repository Layout
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- `src/worph/`: primary package implementation
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- `.ci_shims/morph_kgc/`: compatibility shim re-exporting from `worph`
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- `test/`: regression and issue-driven test suites
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- `examples/`: runnable configs and sample scripts
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- `specs/`: compatibility, playbook, and agent-guidance documents
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- `specs/agents/`: specialist subagent briefs used during planning/review
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- `docs/`: operational documentation
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## Quick Start
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```bash
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uv sync --extra test
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uv run python -m worph examples/csv/config.ini
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```
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## CLI Commands
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Run using the package entrypoint:
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```bash
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uv run worph examples/json/config.ini
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```
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Equivalent module form:
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```bash
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uv run python -m worph examples/xml/config.ini
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```
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## Testing
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Run full CI-aligned tests with shim compatibility enabled:
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```bash
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PYTHONPATH=.ci_shims:src uv run pytest -q
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```
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Run the explicit shim validation test:
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```bash
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PYTHONPATH=.ci_shims:src uv run pytest -q test/test_ci_shim_uses_worph.py
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```
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## Compatibility
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Some retained tests still import `morph_kgc`. CI sets `PYTHONPATH=.ci_shims:src` so imports resolve to `.ci_shims/morph_kgc` first, then delegate to `worph`.
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## Documentation
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- [docs/compatibility-shims.md](docs/compatibility-shims.md)
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- [specs/COMPATIBILITY.md](specs/COMPATIBILITY.md)
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- [specs/lessons-learned.md](specs/lessons-learned.md)
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## Release
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Publishing to PyPI is handled inside `.github/workflows/ci.yml`.
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- Trigger: push a version tag like `0.1.5` or `v0.1.5`
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- Gate: `publish` job runs only after `test-and-examples` succeeds
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- Auth: PyPI Trusted Publisher (OIDC)
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Trusted Publisher settings on `pypi.org`:
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- Owner: `wordlift`
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- Repository: `worph`
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- Workflow name: `ci.yml`
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- Environment: empty (unless you add one in GitHub)
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## License
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All code and documentation in this repository are licensed under the Apache License 2.0.
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