workbench 0.8.177__tar.gz → 0.8.178__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {workbench-0.8.177 → workbench-0.8.178}/PKG-INFO +1 -1
- {workbench-0.8.177 → workbench-0.8.178}/model_docker_images/ml_pipelines/Dockerfile +1 -1
- {workbench-0.8.177 → workbench-0.8.178}/src/workbench/core/artifacts/feature_set_core.py +37 -8
- {workbench-0.8.177 → workbench-0.8.178}/src/workbench/core/views/training_view.py +38 -48
- {workbench-0.8.177 → workbench-0.8.178}/src/workbench/model_scripts/custom_models/uq_models/generated_model_script.py +11 -15
- {workbench-0.8.177 → workbench-0.8.178}/src/workbench/model_scripts/custom_models/uq_models/mapie.template +10 -14
- {workbench-0.8.177 → workbench-0.8.178}/src/workbench/scripts/ml_pipeline_sqs.py +14 -2
- {workbench-0.8.177 → workbench-0.8.178}/src/workbench/utils/model_utils.py +11 -2
- {workbench-0.8.177 → workbench-0.8.178}/src/workbench/utils/xgboost_model_utils.py +1 -1
- {workbench-0.8.177 → workbench-0.8.178}/src/workbench.egg-info/PKG-INFO +1 -1
- {workbench-0.8.177 → workbench-0.8.178}/.flake8 +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/.github/PULL_REQUEST_TEMPLATE.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/.github/dependabot.yml +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/.github/workflows/deploy-docs.yml +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/.github/workflows/python-lint.yml +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/.gitignore +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/CONTRIBUTING.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/Dockerfile +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/LICENSE +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/Makefile +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/README.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/SECURITY.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/Dockerfile +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/README.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/app.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/assets/favicon.ico +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/dashboard +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/deploy.sh +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/nginx.conf +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/open_source_config.json +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/data_sources/callbacks.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/data_sources/layout.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/data_sources/page.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/endpoints/callbacks.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/endpoints/layout.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/endpoints/page.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/feature_sets/callbacks.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/feature_sets/layout.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/feature_sets/page.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/license/page.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/main/callbacks.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/main/layout.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/main/page.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/models/callbacks.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/models/layout.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/models/page.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/pipelines/callbacks.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/pipelines/layout.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/pipelines/page.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/status/page.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/static/dark.css +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/static/light.css +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/supervisord.conf +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/compound_explorer/Dockerfile +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/compound_explorer/README.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/compound_explorer/app.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/compound_explorer/assets/favicon.ico +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/compound_explorer/callbacks.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/compound_explorer/explorer +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/compound_explorer/layout.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/compound_explorer/nginx.conf +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/compound_explorer/open_source_config.json +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/compound_explorer/requirements.txt +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/compound_explorer/storage/callbacks.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/compound_explorer/storage/callbacks_new.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/compound_explorer/storage/layout_new.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/applications/compound_explorer/supervisord.conf +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/aws_account_setup.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/aws_identity_check.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/build_ml_pipeline.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/compound_explorer/.gitignore +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/compound_explorer/README.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/compound_explorer/app.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/compound_explorer/cdk.json +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/compound_explorer/compound_explorer/__init__.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/compound_explorer/compound_explorer/compound_explorer_stack.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/compound_explorer/requirements.txt +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/event_bridge/Readme.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_compute/README.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_compute/app.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_compute/cdk.json +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_compute/requirements.txt +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_compute/tests/__init__.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_compute/tests/unit/__init__.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_compute/tests/unit/test_workbench_compute_stack.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_compute/workbench_compute/__init__.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_compute/workbench_compute/workbench_compute_stack.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_core/.gitignore +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_core/README.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_core/app.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_core/cdk.json +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_core/requirements-dev.txt +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_core/requirements.txt +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_core/source.bat +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_core/workbench_core/__init__.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_core/workbench_core/workbench_core_stack.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_dashboard_full/.gitignore +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_dashboard_full/README.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_dashboard_full/app.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_dashboard_full/cdk.json +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_dashboard_full/requirements-dev.txt +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_dashboard_full/requirements.txt +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_dashboard_full/source.bat +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_dashboard_full/workbench_dashboard_full/__init__.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_dashboard_full/workbench_dashboard_full/workbench_dashboard_stack.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_dashboard_lite/.gitignore +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_dashboard_lite/README.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_dashboard_lite/app.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_dashboard_lite/cdk.json +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_dashboard_lite/requirements.txt +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_dashboard_lite/workbench_dashboard_lite/__init__.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/aws_setup/workbench_dashboard_lite/workbench_dashboard_lite/workbench_dashboard_stack.py +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/data/abalone.csv +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/data/karate_graph.json +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/data/test_data.csv +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/data/test_data.json +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/data/wine_dataset.csv +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/deploy_docker.sh +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/admin/aws_service_limits.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/admin/base_docker_push.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/admin/dashboard_docker_push.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/admin/dashboard_s3_plugins.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/admin/explorer_docker_push.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/admin/images/dashboard_secret_click.png +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/admin/images/serverless_quotas.png +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/admin/images/status_showing_S3_path.png +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/admin/pypi_release.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/admin/workbench_docker_for_lambdas.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/api_classes/data_source.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/api_classes/df_store.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/api_classes/endpoint.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/api_classes/feature_set.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/api_classes/meta.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/api_classes/model.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/api_classes/monitor.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/api_classes/overview.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/api_classes/parameter_store.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/api_classes/pipelines.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/api_classes/views.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/aws_setup/aws_access_management.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/aws_setup/aws_client_vpn.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/aws_setup/aws_setup.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/aws_setup/aws_tips_and_tricks.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/aws_setup/core_stack.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/aws_setup/dashboard_stack.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/aws_setup/domain_cert_setup.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/aws_setup/full_pipeline.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/aws_setup/iam_assume_role.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/aws_setup/sso_assume_role.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/blogs/aws_credentials_lock.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/blogs/canonicalization_and_tautomerization.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/blogs/compound_etl.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/blogs/compound_explorer.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/blogs/descriptor_drilldown.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/blogs/eda.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/blogs/feature_importances.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/blogs/fun_with_workbench/fun_with_endpoints.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/blogs/htg.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/blogs/index.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/blogs/model_monitoring.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/blogs/residual_analysis.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/cached/cached_data_source.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/cached/cached_endpoint.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/cached/cached_feature_set.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/cached/cached_meta.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/cached/cached_model.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/cached/overview.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/chem_utils/index.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/cloudwatch/index.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/comparisons/workbench_vs_databricks.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/compound_explorer/tox21.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/compound_explorer/toxicity_modeling.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/core_classes/artifacts/artifact.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/core_classes/artifacts/athena_source.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/core_classes/artifacts/data_source_abstract.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/core_classes/artifacts/endpoint_core.md +0 -0
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- {workbench-0.8.177 → workbench-0.8.178}/docs/core_classes/artifacts/model_core.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/core_classes/artifacts/monitor_core.md +0 -0
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- {workbench-0.8.177 → workbench-0.8.178}/docs/core_classes/overview.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/core_classes/transforms/data_loaders_heavy.md +0 -0
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- {workbench-0.8.177 → workbench-0.8.178}/docs/core_classes/transforms/features_to_model.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/core_classes/transforms/model_to_endpoint.md +0 -0
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- {workbench-0.8.177 → workbench-0.8.178}/docs/core_classes/transforms/pandas_transforms.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/core_classes/transforms/transform.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/core_classes/views/computation_view.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/core_classes/views/display_view.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/core_classes/views/inference_view.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/core_classes/views/overview.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/core_classes/views/training_view.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/data_algorithms/dataframes/overview.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/data_algorithms/graphs/overview.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/data_algorithms/overview.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/data_algorithms/spark/overview.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/data_algorithms/sql/overview.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/enterprise/index.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/enterprise/private_saas.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/enterprise/project_branding.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/enterprise/themes.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/getting_started/index.md +0 -0
- {workbench-0.8.177 → workbench-0.8.178}/docs/glue/index.md +0 -0
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+
"""
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from workbench.core.views import TrainingView
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+
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# Grab the existing holdout ids
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holdout_ids = self.get_training_holdouts()
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+
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# Create a NEW training view
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self.log.important(f"Setting Training Filter: {filter_expression}")
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TrainingView.create(
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self, id_column=self.id_column, holdout_ids=holdout_ids, filter_expression=filter_expression
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+
)
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+
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@classmethod
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def delete_views(cls, table: str, database: str):
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"""Delete any views associated with this FeatureSet
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@@ -707,7 +726,7 @@ if __name__ == "__main__":
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# Test getting the holdout ids
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print("Getting the hold out ids...")
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710
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-
holdout_ids = my_features.get_training_holdouts(
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+
holdout_ids = my_features.get_training_holdouts()
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print(f"Holdout IDs: {holdout_ids}")
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# Get a sample of the data
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@@ -729,16 +748,26 @@ if __name__ == "__main__":
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table = my_features.view("training").table
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df = my_features.query(f'SELECT id, name FROM "{table}"')
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731
750
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my_holdout_ids = [id for id in df["id"] if id < 20]
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732
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-
my_features.set_training_holdouts(
|
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733
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-
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734
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# Test the hold out set functionality with strings
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735
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-
print("Setting hold out ids (strings)...")
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736
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-
my_holdout_ids = [name for name in df["name"] if int(name.split(" ")[1]) > 80]
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737
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-
my_features.set_training_holdouts("name", my_holdout_ids)
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+
my_features.set_training_holdouts(my_holdout_ids)
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# Get the training data
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print("Getting the training data...")
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training_data = my_features.get_training_data()
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756
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+
print(f"Training Data: {training_data.shape}")
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+
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# Test the filter expression functionality
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print("Setting a filter expression...")
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my_features.set_training_filter("id < 50 AND height > 65.0")
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training_data = my_features.get_training_data()
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+
print(f"Training Data: {training_data.shape}")
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print(training_data)
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# Remove training filter
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print("Removing the filter expression...")
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my_features.set_training_filter(None)
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+
training_data = my_features.get_training_data()
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+
print(f"Training Data: {training_data.shape}")
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print(training_data)
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# Now delete the AWS artifacts associated with this Feature Set
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# print("Deleting Workbench Feature Set...")
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@@ -3,7 +3,7 @@
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3
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from typing import Union
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# Workbench Imports
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from workbench.api import
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+
from workbench.api import FeatureSet
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7
7
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from workbench.core.views.view import View
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8
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from workbench.core.views.create_view import CreateView
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from workbench.core.views.view_utils import get_column_list
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@@ -34,6 +34,7 @@ class TrainingView(CreateView):
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source_table: str = None,
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id_column: str = None,
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holdout_ids: Union[list[str], list[int], None] = None,
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+
filter_expression: str = None,
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) -> Union[View, None]:
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"""Factory method to create and return a TrainingView instance.
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@@ -42,6 +43,8 @@ class TrainingView(CreateView):
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source_table (str, optional): The table/view to create the view from. Defaults to None.
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id_column (str, optional): The name of the id column. Defaults to None.
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holdout_ids (Union[list[str], list[int], None], optional): A list of holdout ids. Defaults to None.
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+
filter_expression (str, optional): SQL filter expression (e.g., "age > 25 AND status = 'active'").
|
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+
Defaults to None.
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Returns:
|
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47
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Union[View, None]: The created View object (or None if failed to create the view)
|
|
@@ -69,28 +72,36 @@ class TrainingView(CreateView):
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else:
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id_column = instance.auto_id_column
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-
#
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-
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-
|
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-
|
|
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|
+
# Enclose each column name in double quotes
|
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76
|
+
sql_columns = ", ".join([f'"{column}"' for column in column_list])
|
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+
|
|
78
|
+
# Build the training assignment logic
|
|
79
|
+
if holdout_ids:
|
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80
|
+
# Format the list of holdout ids for SQL IN clause
|
|
81
|
+
if all(isinstance(id, str) for id in holdout_ids):
|
|
82
|
+
formatted_holdout_ids = ", ".join(f"'{id}'" for id in holdout_ids)
|
|
83
|
+
else:
|
|
84
|
+
formatted_holdout_ids = ", ".join(map(str, holdout_ids))
|
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76
85
|
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77
|
-
|
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78
|
-
|
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79
|
-
|
|
86
|
+
training_logic = f"""CASE
|
|
87
|
+
WHEN {id_column} IN ({formatted_holdout_ids}) THEN False
|
|
88
|
+
ELSE True
|
|
89
|
+
END AS training"""
|
|
80
90
|
else:
|
|
81
|
-
|
|
91
|
+
# Default 80/20 split using modulo
|
|
92
|
+
training_logic = f"""CASE
|
|
93
|
+
WHEN MOD(ROW_NUMBER() OVER (ORDER BY {id_column}), 10) < 8 THEN True
|
|
94
|
+
ELSE False
|
|
95
|
+
END AS training"""
|
|
82
96
|
|
|
83
|
-
#
|
|
84
|
-
|
|
97
|
+
# Build WHERE clause if filter_expression is provided
|
|
98
|
+
where_clause = f"\nWHERE {filter_expression}" if filter_expression else ""
|
|
85
99
|
|
|
86
100
|
# Construct the CREATE VIEW query
|
|
87
101
|
create_view_query = f"""
|
|
88
102
|
CREATE OR REPLACE VIEW {instance.table} AS
|
|
89
|
-
SELECT {sql_columns},
|
|
90
|
-
|
|
91
|
-
ELSE True
|
|
92
|
-
END AS training
|
|
93
|
-
FROM {instance.source_table}
|
|
103
|
+
SELECT {sql_columns}, {training_logic}
|
|
104
|
+
FROM {instance.source_table}{where_clause}
|
|
94
105
|
"""
|
|
95
106
|
|
|
96
107
|
# Execute the CREATE VIEW query
|
|
@@ -99,43 +110,13 @@ class TrainingView(CreateView):
|
|
|
99
110
|
# Return the View
|
|
100
111
|
return View(instance.data_source, instance.view_name, auto_create_view=False)
|
|
101
112
|
|
|
102
|
-
# This is an internal method that's used to create a default training view
|
|
103
|
-
def _default_training_view(self, data_source: DataSource, id_column: str):
|
|
104
|
-
"""Create a default view in Athena that assigns roughly 80% of the data to training
|
|
105
|
-
|
|
106
|
-
Args:
|
|
107
|
-
data_source (DataSource): The Workbench DataSource object
|
|
108
|
-
id_column (str): The name of the id column
|
|
109
|
-
"""
|
|
110
|
-
self.log.important(f"Creating default Training View {self.table}...")
|
|
111
|
-
|
|
112
|
-
# Drop any columns generated from AWS
|
|
113
|
-
aws_cols = ["write_time", "api_invocation_time", "is_deleted", "event_time"]
|
|
114
|
-
column_list = [col for col in data_source.columns if col not in aws_cols]
|
|
115
|
-
|
|
116
|
-
# Enclose each column name in double quotes
|
|
117
|
-
sql_columns = ", ".join([f'"{column}"' for column in column_list])
|
|
118
|
-
|
|
119
|
-
# Construct the CREATE VIEW query with a simple modulo operation for the 80/20 split
|
|
120
|
-
create_view_query = f"""
|
|
121
|
-
CREATE OR REPLACE VIEW "{self.table}" AS
|
|
122
|
-
SELECT {sql_columns}, CASE
|
|
123
|
-
WHEN MOD(ROW_NUMBER() OVER (ORDER BY {id_column}), 10) < 8 THEN True -- Assign 80% to training
|
|
124
|
-
ELSE False -- Assign roughly 20% to validation/test
|
|
125
|
-
END AS training
|
|
126
|
-
FROM {self.base_table_name}
|
|
127
|
-
"""
|
|
128
|
-
|
|
129
|
-
# Execute the CREATE VIEW query
|
|
130
|
-
data_source.execute_statement(create_view_query)
|
|
131
|
-
|
|
132
113
|
|
|
133
114
|
if __name__ == "__main__":
|
|
134
115
|
"""Exercise the Training View functionality"""
|
|
135
116
|
from workbench.api import FeatureSet
|
|
136
117
|
|
|
137
118
|
# Get the FeatureSet
|
|
138
|
-
fs = FeatureSet("
|
|
119
|
+
fs = FeatureSet("abalone_features")
|
|
139
120
|
|
|
140
121
|
# Delete the existing training view
|
|
141
122
|
training_view = TrainingView.create(fs)
|
|
@@ -152,9 +133,18 @@ if __name__ == "__main__":
|
|
|
152
133
|
|
|
153
134
|
# Create a TrainingView with holdout ids
|
|
154
135
|
my_holdout_ids = list(range(10))
|
|
155
|
-
training_view = TrainingView.create(fs, id_column="
|
|
136
|
+
training_view = TrainingView.create(fs, id_column="auto_id", holdout_ids=my_holdout_ids)
|
|
156
137
|
|
|
157
138
|
# Pull the training data
|
|
158
139
|
df = training_view.pull_dataframe()
|
|
159
140
|
print(df.head())
|
|
160
141
|
print(df["training"].value_counts())
|
|
142
|
+
print(f"Shape: {df.shape}")
|
|
143
|
+
print(f"Diameter min: {df['diameter'].min()}, max: {df['diameter'].max()}")
|
|
144
|
+
|
|
145
|
+
# Test the filter expression
|
|
146
|
+
training_view = TrainingView.create(fs, id_column="auto_id", filter_expression="diameter > 0.5")
|
|
147
|
+
df = training_view.pull_dataframe()
|
|
148
|
+
print(df.head())
|
|
149
|
+
print(f"Shape with filter: {df.shape}")
|
|
150
|
+
print(f"Diameter min: {df['diameter'].min()}, max: {df['diameter'].max()}")
|
|
@@ -22,7 +22,7 @@ from typing import List, Tuple
|
|
|
22
22
|
|
|
23
23
|
# Template Placeholders
|
|
24
24
|
TEMPLATE_PARAMS = {
|
|
25
|
-
"target": "
|
|
25
|
+
"target": "logs",
|
|
26
26
|
"features": ['chi2v', 'fr_sulfone', 'chi1v', 'bcut2d_logplow', 'fr_piperzine', 'kappa3', 'smr_vsa1', 'slogp_vsa5', 'fr_ketone_topliss', 'fr_sulfonamd', 'fr_imine', 'fr_benzene', 'fr_ester', 'chi2n', 'labuteasa', 'peoe_vsa2', 'smr_vsa6', 'bcut2d_chglo', 'fr_sh', 'peoe_vsa1', 'fr_allylic_oxid', 'chi4n', 'fr_ar_oh', 'fr_nh0', 'fr_term_acetylene', 'slogp_vsa7', 'slogp_vsa4', 'estate_vsa1', 'vsa_estate4', 'numbridgeheadatoms', 'numheterocycles', 'fr_ketone', 'fr_morpholine', 'fr_guanido', 'estate_vsa2', 'numheteroatoms', 'fr_nitro_arom_nonortho', 'fr_piperdine', 'nocount', 'numspiroatoms', 'fr_aniline', 'fr_thiophene', 'slogp_vsa10', 'fr_amide', 'slogp_vsa2', 'fr_epoxide', 'vsa_estate7', 'fr_ar_coo', 'fr_imidazole', 'fr_nitrile', 'fr_oxazole', 'numsaturatedrings', 'fr_pyridine', 'fr_hoccn', 'fr_ndealkylation1', 'numaliphaticheterocycles', 'fr_phenol', 'maxpartialcharge', 'vsa_estate5', 'peoe_vsa13', 'minpartialcharge', 'qed', 'fr_al_oh', 'slogp_vsa11', 'chi0n', 'fr_bicyclic', 'peoe_vsa12', 'fpdensitymorgan1', 'fr_oxime', 'molwt', 'fr_dihydropyridine', 'smr_vsa5', 'peoe_vsa5', 'fr_nitro', 'hallkieralpha', 'heavyatommolwt', 'fr_alkyl_halide', 'peoe_vsa8', 'fr_nhpyrrole', 'fr_isocyan', 'bcut2d_chghi', 'fr_lactam', 'peoe_vsa11', 'smr_vsa9', 'tpsa', 'chi4v', 'slogp_vsa1', 'phi', 'bcut2d_logphi', 'avgipc', 'estate_vsa11', 'fr_coo', 'bcut2d_mwhi', 'numunspecifiedatomstereocenters', 'vsa_estate10', 'estate_vsa8', 'numvalenceelectrons', 'fr_nh2', 'fr_lactone', 'vsa_estate1', 'estate_vsa4', 'numatomstereocenters', 'vsa_estate8', 'fr_para_hydroxylation', 'peoe_vsa3', 'fr_thiazole', 'peoe_vsa10', 'fr_ndealkylation2', 'slogp_vsa12', 'peoe_vsa9', 'maxestateindex', 'fr_quatn', 'smr_vsa7', 'minestateindex', 'numaromaticheterocycles', 'numrotatablebonds', 'fr_ar_nh', 'fr_ether', 'exactmolwt', 'fr_phenol_noorthohbond', 'slogp_vsa3', 'fr_ar_n', 'sps', 'fr_c_o_nocoo', 'bertzct', 'peoe_vsa7', 'slogp_vsa8', 'numradicalelectrons', 'molmr', 'fr_tetrazole', 'numsaturatedcarbocycles', 'bcut2d_mrhi', 'kappa1', 'numamidebonds', 'fpdensitymorgan2', 'smr_vsa8', 'chi1n', 'estate_vsa6', 'fr_barbitur', 'fr_diazo', 'kappa2', 'chi0', 'bcut2d_mrlow', 'balabanj', 'peoe_vsa4', 'numhacceptors', 'fr_sulfide', 'chi3n', 'smr_vsa2', 'fr_al_oh_notert', 'fr_benzodiazepine', 'fr_phos_ester', 'fr_aldehyde', 'fr_coo2', 'estate_vsa5', 'fr_prisulfonamd', 'numaromaticcarbocycles', 'fr_unbrch_alkane', 'fr_urea', 'fr_nitroso', 'smr_vsa10', 'fr_c_s', 'smr_vsa3', 'fr_methoxy', 'maxabspartialcharge', 'slogp_vsa9', 'heavyatomcount', 'fr_azide', 'chi3v', 'smr_vsa4', 'mollogp', 'chi0v', 'fr_aryl_methyl', 'fr_nh1', 'fpdensitymorgan3', 'fr_furan', 'fr_hdrzine', 'fr_arn', 'numaromaticrings', 'vsa_estate3', 'fr_azo', 'fr_halogen', 'estate_vsa9', 'fr_hdrzone', 'numhdonors', 'fr_alkyl_carbamate', 'fr_isothiocyan', 'minabspartialcharge', 'fr_al_coo', 'ringcount', 'chi1', 'estate_vsa7', 'fr_nitro_arom', 'vsa_estate9', 'minabsestateindex', 'maxabsestateindex', 'vsa_estate6', 'estate_vsa10', 'estate_vsa3', 'fr_n_o', 'fr_amidine', 'fr_thiocyan', 'fr_phos_acid', 'fr_c_o', 'fr_imide', 'numaliphaticrings', 'peoe_vsa6', 'vsa_estate2', 'nhohcount', 'numsaturatedheterocycles', 'slogp_vsa6', 'peoe_vsa14', 'fractioncsp3', 'bcut2d_mwlow', 'numaliphaticcarbocycles', 'fr_priamide', 'nacid', 'nbase', 'naromatom', 'narombond', 'sz', 'sm', 'sv', 'sse', 'spe', 'sare', 'sp', 'si', 'mz', 'mm', 'mv', 'mse', 'mpe', 'mare', 'mp', 'mi', 'xch_3d', 'xch_4d', 'xch_5d', 'xch_6d', 'xch_7d', 'xch_3dv', 'xch_4dv', 'xch_5dv', 'xch_6dv', 'xch_7dv', 'xc_3d', 'xc_4d', 'xc_5d', 'xc_6d', 'xc_3dv', 'xc_4dv', 'xc_5dv', 'xc_6dv', 'xpc_4d', 'xpc_5d', 'xpc_6d', 'xpc_4dv', 'xpc_5dv', 'xpc_6dv', 'xp_0d', 'xp_1d', 'xp_2d', 'xp_3d', 'xp_4d', 'xp_5d', 'xp_6d', 'xp_7d', 'axp_0d', 'axp_1d', 'axp_2d', 'axp_3d', 'axp_4d', 'axp_5d', 'axp_6d', 'axp_7d', 'xp_0dv', 'xp_1dv', 'xp_2dv', 'xp_3dv', 'xp_4dv', 'xp_5dv', 'xp_6dv', 'xp_7dv', 'axp_0dv', 'axp_1dv', 'axp_2dv', 'axp_3dv', 'axp_4dv', 'axp_5dv', 'axp_6dv', 'axp_7dv', 'c1sp1', 'c2sp1', 'c1sp2', 'c2sp2', 'c3sp2', 'c1sp3', 'c2sp3', 'c3sp3', 'c4sp3', 'hybratio', 'fcsp3', 'num_stereocenters', 'num_unspecified_stereocenters', 'num_defined_stereocenters', 'num_r_centers', 'num_s_centers', 'num_stereobonds', 'num_e_bonds', 'num_z_bonds', 'stereo_complexity', 'frac_defined_stereo'],
|
|
27
27
|
"compressed_features": [],
|
|
28
28
|
"train_all_data": True
|
|
@@ -242,7 +242,7 @@ if __name__ == "__main__":
|
|
|
242
242
|
print(f"R2: {xgb_r2:.3f}")
|
|
243
243
|
|
|
244
244
|
# Define confidence levels we want to model
|
|
245
|
-
confidence_levels = [0.50, 0.80, 0.90, 0.95] # 50%, 80%, 90%, 95% confidence intervals
|
|
245
|
+
confidence_levels = [0.50, 0.68, 0.80, 0.90, 0.95] # 50%, 68%, 80%, 90%, 95% confidence intervals
|
|
246
246
|
|
|
247
247
|
# Store MAPIE models for each confidence level
|
|
248
248
|
mapie_models = {}
|
|
@@ -459,6 +459,9 @@ def predict_fn(df, models) -> pd.DataFrame:
|
|
|
459
459
|
if conf_level == 0.50: # 50% CI
|
|
460
460
|
df["q_25"] = y_pis[:, 0, 0]
|
|
461
461
|
df["q_75"] = y_pis[:, 1, 0]
|
|
462
|
+
elif conf_level == 0.68: # 68% CI
|
|
463
|
+
df["q_16"] = y_pis[:, 0, 0]
|
|
464
|
+
df["q_84"] = y_pis[:, 1, 0]
|
|
462
465
|
elif conf_level == 0.80: # 80% CI
|
|
463
466
|
df["q_10"] = y_pis[:, 0, 0]
|
|
464
467
|
df["q_90"] = y_pis[:, 1, 0]
|
|
@@ -472,23 +475,16 @@ def predict_fn(df, models) -> pd.DataFrame:
|
|
|
472
475
|
# Add median (q_50) from XGBoost prediction
|
|
473
476
|
df["q_50"] = df["prediction"]
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# Calculate
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df["prediction_std"] = interval_width / 3.92
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# Calculate a psueduo-standard deviation from the 68% interval width
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df["prediction_std"] = (df["q_84"] - df["q_16"]) / 2.0
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# Reorder the quantile columns for easier reading
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quantile_cols = ["q_025", "q_05", "q_10", "q_25", "q_75", "q_90", "q_95", "q_975"]
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quantile_cols = ["q_025", "q_05", "q_10", "q_16", "q_25", "q_75", "q_84", "q_90", "q_95", "q_975"]
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other_cols = [col for col in df.columns if col not in quantile_cols]
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df = df[other_cols + quantile_cols]
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#
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df["
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# Confidence bands
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df["confidence_band"] = pd.cut(
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df["uncertainty_score"],
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bins=[0, 0.5, 1.0, 2.0, np.inf],
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labels=["high", "medium", "low", "very_low"]
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)
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# Adjust the outer quantiles to ensure they encompass the prediction
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df["q_025"] = np.minimum(df["q_025"], df["prediction"])
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df["q_975"] = np.maximum(df["q_975"], df["prediction"])
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return df
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@@ -242,7 +242,7 @@ if __name__ == "__main__":
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print(f"R2: {xgb_r2:.3f}")
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# Define confidence levels we want to model
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confidence_levels = [0.50, 0.80, 0.90, 0.95] # 50%, 80%, 90%, 95% confidence intervals
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confidence_levels = [0.50, 0.68, 0.80, 0.90, 0.95] # 50%, 68%, 80%, 90%, 95% confidence intervals
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# Store MAPIE models for each confidence level
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mapie_models = {}
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@@ -459,6 +459,9 @@ def predict_fn(df, models) -> pd.DataFrame:
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if conf_level == 0.50: # 50% CI
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df["q_25"] = y_pis[:, 0, 0]
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df["q_75"] = y_pis[:, 1, 0]
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+
elif conf_level == 0.68: # 68% CI
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df["q_16"] = y_pis[:, 0, 0]
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df["q_84"] = y_pis[:, 1, 0]
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elif conf_level == 0.80: # 80% CI
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df["q_10"] = y_pis[:, 0, 0]
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df["q_90"] = y_pis[:, 1, 0]
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@@ -472,23 +475,16 @@ def predict_fn(df, models) -> pd.DataFrame:
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# Add median (q_50) from XGBoost prediction
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df["q_50"] = df["prediction"]
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# Calculate
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-
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-
df["prediction_std"] = interval_width / 1.348
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478
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+
# Calculate a psueduo-standard deviation from the 68% interval width
|
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479
|
+
df["prediction_std"] = (df["q_84"] - df["q_16"]) / 2.0
|
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# Reorder the quantile columns for easier reading
|
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-
quantile_cols = ["q_025", "q_05", "q_10", "q_25", "q_75", "q_90", "q_95", "q_975"]
|
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482
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+
quantile_cols = ["q_025", "q_05", "q_10", "q_16", "q_25", "q_75", "q_84", "q_90", "q_95", "q_975"]
|
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other_cols = [col for col in df.columns if col not in quantile_cols]
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df = df[other_cols + quantile_cols]
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-
#
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-
df["
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-
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-
# Confidence bands
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-
df["confidence_band"] = pd.cut(
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df["uncertainty_score"],
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-
bins=[0, 0.5, 1.0, 2.0, np.inf],
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491
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-
labels=["high", "medium", "low", "very_low"]
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-
)
|
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486
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+
# Adjust the outer quantiles to ensure they encompass the prediction
|
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|
+
df["q_025"] = np.minimum(df["q_025"], df["prediction"])
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+
df["q_975"] = np.maximum(df["q_975"], df["prediction"])
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return df
|
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@@ -13,12 +13,13 @@ cm = ConfigManager()
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13
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workbench_bucket = cm.get_config("WORKBENCH_BUCKET")
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14
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-
def submit_to_sqs(script_path: str, size: str = "small") -> None:
|
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16
|
+
def submit_to_sqs(script_path: str, size: str = "small", realtime: bool = False) -> None:
|
|
17
17
|
"""
|
|
18
18
|
Upload script to S3 and submit message to SQS queue for processing.
|
|
19
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|
Args:
|
|
20
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|
script_path: Local path to the ML pipeline script
|
|
21
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|
size: Job size tier - "small" (default), "medium", or "large"
|
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22
|
+
realtime: If True, sets serverless=False for real-time processing (default: False, meaning serverless=True)
|
|
22
23
|
"""
|
|
23
24
|
print(f"\n{'=' * 60}")
|
|
24
25
|
print("🚀 SUBMITTING ML PIPELINE JOB")
|
|
@@ -33,6 +34,7 @@ def submit_to_sqs(script_path: str, size: str = "small") -> None:
|
|
|
33
34
|
|
|
34
35
|
print(f"📄 Script: {script_file.name}")
|
|
35
36
|
print(f"📏 Size tier: {size}")
|
|
37
|
+
print(f"⚡ Mode: {'Real-time' if realtime else 'Serverless'} (serverless={'False' if realtime else 'True'})")
|
|
36
38
|
print(f"🪣 Bucket: {workbench_bucket}")
|
|
37
39
|
sqs = AWSAccountClamp().boto3_session.client("sqs")
|
|
38
40
|
script_name = script_file.name
|
|
@@ -88,6 +90,10 @@ def submit_to_sqs(script_path: str, size: str = "small") -> None:
|
|
|
88
90
|
|
|
89
91
|
# Prepare message
|
|
90
92
|
message = {"script_path": s3_path, "size": size}
|
|
93
|
+
|
|
94
|
+
# Set serverless environment variable (defaults to True, False if --realtime)
|
|
95
|
+
message["environment"] = {"SERVERLESS": "False" if realtime else "True"}
|
|
96
|
+
|
|
91
97
|
print("\n📨 Sending message to SQS...")
|
|
92
98
|
|
|
93
99
|
# Send the message to SQS
|
|
@@ -110,6 +116,7 @@ def submit_to_sqs(script_path: str, size: str = "small") -> None:
|
|
|
110
116
|
print(f"{'=' * 60}")
|
|
111
117
|
print(f"📄 Script: {script_name}")
|
|
112
118
|
print(f"📏 Size: {size}")
|
|
119
|
+
print(f"⚡ Mode: {'Real-time' if realtime else 'Serverless'} (SERVERLESS={'False' if realtime else 'True'})")
|
|
113
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|
print(f"🆔 Message ID: {message_id}")
|
|
114
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|
print("\n🔍 MONITORING LOCATIONS:")
|
|
115
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|
print(f" • SQS Queue: AWS Console → SQS → {queue_name}")
|
|
@@ -126,9 +133,14 @@ def main():
|
|
|
126
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|
parser.add_argument(
|
|
127
134
|
"--size", default="small", choices=["small", "medium", "large"], help="Job size tier (default: small)"
|
|
128
135
|
)
|
|
136
|
+
parser.add_argument(
|
|
137
|
+
"--realtime",
|
|
138
|
+
action="store_true",
|
|
139
|
+
help="Run in real-time mode (sets serverless=False). Default is serverless mode (serverless=True)",
|
|
140
|
+
)
|
|
129
141
|
args = parser.parse_args()
|
|
130
142
|
try:
|
|
131
|
-
submit_to_sqs(args.script_file, args.size)
|
|
143
|
+
submit_to_sqs(args.script_file, args.size, realtime=args.realtime)
|
|
132
144
|
except Exception as e:
|
|
133
145
|
print(f"\n❌ ERROR: {e}")
|
|
134
146
|
log.error(f"Error: {e}")
|
|
@@ -222,6 +222,7 @@ def uq_metrics(df: pd.DataFrame, target_col: str) -> Dict[str, Any]:
|
|
|
222
222
|
lower_95, upper_95 = df["q_025"], df["q_975"]
|
|
223
223
|
lower_90, upper_90 = df["q_05"], df["q_95"]
|
|
224
224
|
lower_80, upper_80 = df["q_10"], df["q_90"]
|
|
225
|
+
lower_68, upper_68 = df["q_16"], df["q_84"]
|
|
225
226
|
lower_50, upper_50 = df["q_25"], df["q_75"]
|
|
226
227
|
elif "prediction_std" in df.columns:
|
|
227
228
|
lower_95 = df["prediction"] - 1.96 * df["prediction_std"]
|
|
@@ -230,6 +231,8 @@ def uq_metrics(df: pd.DataFrame, target_col: str) -> Dict[str, Any]:
|
|
|
230
231
|
upper_90 = df["prediction"] + 1.645 * df["prediction_std"]
|
|
231
232
|
lower_80 = df["prediction"] - 1.282 * df["prediction_std"]
|
|
232
233
|
upper_80 = df["prediction"] + 1.282 * df["prediction_std"]
|
|
234
|
+
lower_68 = df["prediction"] - 1.0 * df["prediction_std"]
|
|
235
|
+
upper_68 = df["prediction"] + 1.0 * df["prediction_std"]
|
|
233
236
|
lower_50 = df["prediction"] - 0.674 * df["prediction_std"]
|
|
234
237
|
upper_50 = df["prediction"] + 0.674 * df["prediction_std"]
|
|
235
238
|
else:
|
|
@@ -241,11 +244,13 @@ def uq_metrics(df: pd.DataFrame, target_col: str) -> Dict[str, Any]:
|
|
|
241
244
|
coverage_95 = np.mean((df[target_col] >= lower_95) & (df[target_col] <= upper_95))
|
|
242
245
|
coverage_90 = np.mean((df[target_col] >= lower_90) & (df[target_col] <= upper_90))
|
|
243
246
|
coverage_80 = np.mean((df[target_col] >= lower_80) & (df[target_col] <= upper_80))
|
|
247
|
+
coverage_68 = np.mean((df[target_col] >= lower_68) & (df[target_col] <= upper_68))
|
|
244
248
|
coverage_50 = np.mean((df[target_col] >= lower_50) & (df[target_col] <= upper_50))
|
|
245
249
|
avg_width_95 = np.mean(upper_95 - lower_95)
|
|
246
250
|
avg_width_90 = np.mean(upper_90 - lower_90)
|
|
247
251
|
avg_width_80 = np.mean(upper_80 - lower_80)
|
|
248
252
|
avg_width_50 = np.mean(upper_50 - lower_50)
|
|
253
|
+
avg_width_68 = np.mean(upper_68 - lower_68)
|
|
249
254
|
|
|
250
255
|
# --- CRPS (measures calibration + sharpness) ---
|
|
251
256
|
z = (df[target_col] - df["prediction"]) / df["prediction_std"]
|
|
@@ -269,12 +274,14 @@ def uq_metrics(df: pd.DataFrame, target_col: str) -> Dict[str, Any]:
|
|
|
269
274
|
# Collect results
|
|
270
275
|
results = {
|
|
271
276
|
"coverage_50": coverage_50,
|
|
277
|
+
"coverage_68": coverage_68,
|
|
272
278
|
"coverage_80": coverage_80,
|
|
273
279
|
"coverage_90": coverage_90,
|
|
274
280
|
"coverage_95": coverage_95,
|
|
275
|
-
"avg_std": avg_std,
|
|
276
281
|
"median_std": median_std,
|
|
282
|
+
"avg_std": avg_std,
|
|
277
283
|
"avg_width_50": avg_width_50,
|
|
284
|
+
"avg_width_68": avg_width_68,
|
|
278
285
|
"avg_width_80": avg_width_80,
|
|
279
286
|
"avg_width_90": avg_width_90,
|
|
280
287
|
"avg_width_95": avg_width_95,
|
|
@@ -286,12 +293,14 @@ def uq_metrics(df: pd.DataFrame, target_col: str) -> Dict[str, Any]:
|
|
|
286
293
|
|
|
287
294
|
print("\n=== UQ Metrics ===")
|
|
288
295
|
print(f"Coverage @ 50%: {coverage_50:.3f} (target: 0.50)")
|
|
296
|
+
print(f"Coverage @ 68%: {coverage_68:.3f} (target: 0.68)")
|
|
289
297
|
print(f"Coverage @ 80%: {coverage_80:.3f} (target: 0.80)")
|
|
290
298
|
print(f"Coverage @ 90%: {coverage_90:.3f} (target: 0.90)")
|
|
291
299
|
print(f"Coverage @ 95%: {coverage_95:.3f} (target: 0.95)")
|
|
292
|
-
print(f"Avg Prediction StdDev: {avg_std:.3f}")
|
|
293
300
|
print(f"Median Prediction StdDev: {median_std:.3f}")
|
|
301
|
+
print(f"Avg Prediction StdDev: {avg_std:.3f}")
|
|
294
302
|
print(f"Average 50% Width: {avg_width_50:.3f}")
|
|
303
|
+
print(f"Average 68% Width: {avg_width_68:.3f}")
|
|
295
304
|
print(f"Average 80% Width: {avg_width_80:.3f}")
|
|
296
305
|
print(f"Average 90% Width: {avg_width_90:.3f}")
|
|
297
306
|
print(f"Average 95% Width: {avg_width_95:.3f}")
|
|
@@ -259,7 +259,7 @@ def cross_fold_inference(workbench_model: Any, nfolds: int = 5) -> Dict[str, Any
|
|
|
259
259
|
xgb_model._Booster = loaded_booster
|
|
260
260
|
# Prepare data
|
|
261
261
|
fs = FeatureSet(workbench_model.get_input())
|
|
262
|
-
df = fs.pull_dataframe()
|
|
262
|
+
df = fs.view("training").pull_dataframe()
|
|
263
263
|
feature_cols = workbench_model.features()
|
|
264
264
|
# Convert string features to categorical
|
|
265
265
|
for col in feature_cols:
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.4
|
|
2
2
|
Name: workbench
|
|
3
|
-
Version: 0.8.
|
|
3
|
+
Version: 0.8.178
|
|
4
4
|
Summary: Workbench: A Dashboard and Python API for creating and deploying AWS SageMaker Model Pipelines
|
|
5
5
|
Author-email: SuperCowPowers LLC <support@supercowpowers.com>
|
|
6
6
|
License-Expression: MIT
|
|
File without changes
|
|
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|
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|
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{workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/data_sources/callbacks.py
RENAMED
|
File without changes
|
{workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/data_sources/layout.py
RENAMED
|
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|
{workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/data_sources/page.py
RENAMED
|
File without changes
|
{workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/endpoints/callbacks.py
RENAMED
|
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|
{workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/endpoints/layout.py
RENAMED
|
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|
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|
{workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/feature_sets/callbacks.py
RENAMED
|
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|
{workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/feature_sets/layout.py
RENAMED
|
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{workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/feature_sets/page.py
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{workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/models/callbacks.py
RENAMED
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|
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|
{workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/pipelines/callbacks.py
RENAMED
|
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{workbench-0.8.177 → workbench-0.8.178}/applications/aws_dashboard/pages/pipelines/layout.py
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{workbench-0.8.177 → workbench-0.8.178}/applications/compound_explorer/open_source_config.json
RENAMED
|
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|