wodson 1.0.0__tar.gz

wodson-1.0.0/LICENSE

@@ -0,0 +1,201 @@
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wodson-1.0.0/PKG-INFO

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+Metadata-Version: 2.4
+Name: wodson
+Version: 1.0.0
+Summary: ASAM ODS tools collection — ATFX reader, HTTP server, and more (experimental)
+Keywords: ASAM,ODS,ATFX,measurement data,protobuf
+Author: Andreas K
+Author-email: Andreas K <totonga@gmail.com>
+License-Expression: Apache-2.0
+License-File: LICENSE
+Classifier: Development Status :: 2 - Pre-Alpha
+Classifier: Intended Audience :: Developers
+Classifier: Intended Audience :: Science/Research
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.14
+Classifier: Topic :: Scientific/Engineering
+Classifier: Topic :: Software Development :: Libraries :: Python Modules
+Requires-Dist: numpy>=2.0
+Requires-Dist: odsbox[oidc]>=1.2.0
+Requires-Python: >=3.14
+Project-URL: Homepage, https://github.com/totonga/asamatfx
+Project-URL: Repository, https://github.com/totonga/asamatfx
+Project-URL: Issues, https://github.com/totonga/asamatfx/issues
+Project-URL: Changelog, https://github.com/totonga/asamatfx/releases
+Description-Content-Type: text/markdown
+
+# wodson
+
+A collection of ASAM ODS tools.
+
+## Features
+
+### Experimental ATFX parser
+
+This is an experimental ATFX reader. Target is not correctness or completeness, but a working prototype that can read some real-world ATFX files and be used as a base for further experiments. It currently supports:
+
+- Parses ATFX XML files (ASAM ODS 5.1, 5.3, 6.2 schemas)
+- Reads optional external binary `.dat` files (all standard typespecs)
+- Loads everything into an in-memory SQLite database
+- Exposes `ods.Model` (application model) and `ods.DataMatrices` (data-read)
+- Embeddable Python library (`AtfxStore`)
+- Standalone HTTP server compatible with `odsbox.ConI` (`AtfxServer`)
+- CLI: `uv run wodson atfx serve --file path/to/file.atfx`
+
+## Requirements
+
+- Python ≥ 3.14
+- [`odsbox`](https://pypi.org/project/odsbox/) ≥ 1.2.0
+- [`numpy`](https://numpy.org/) ≥ 2.0
+
+## Installation
+
+```bash
+pip install wodson
+# or with uv:
+uv add wodson
+```
+
+## Quick Start
+
+See [docs/atfx.md](docs/atfx.md) for usage examples (embedded library, HTTP server, CLI).
+
+## Project Layout
+
+```
+src/wodson/
+    __init__.py          Package root
+    _cli.py              CLI entry point (wodson atfx serve …)
+    atfx/
+        __init__.py          Public API (AtfxStore, AtfxServer, AtfxSession, …)
+        _cli.py              atfx subcommand logic
+        base_model/          ASAM ODS base model protobuf JSON files
+                  ODSBaseModel_asam37.protobuf.json
+        _atfx_store.py       AtfxStore — parses + loads ATFX into SQLite
+        _server.py           AtfxServer — ASAM ODS HTTP server
+        _session.py          AtfxSession — in-process requests adapter
+        _base_model.py       Loads ODSBaseModel JSON → ods.BaseModel
+        _model_builder.py    Builds ods.Model from <application_model> XML
+        _instance_parser.py  Parses <instance_data> (inline + external)
+        _binary_reader.py    Reads external .dat binary files via numpy
+        _db.py               SQLite schema creation + instance loading
+        _data_read.py        SelectStatement → SQL → DataMatrices
+        _xml_utils.py        Namespace-aware XML element lookup helpers
+        _naming.py           ODS name → SQLite identifier utilities
+docs/
+    atfx.md              ATFX reader quick-start guide
+    USAGE.md             Full end-user usage guide
+    spec/                ASAM schema files and base model JSON
+tests/                   pytest test suite
+```
+
+## Development
+
+```bash
+# Install with dev dependencies
+uv sync
+
+# Run tests
+uv run pytest tests/ -v
+
+# Lint
+uv run ruff check src/ tests/
+
+# Type check
+uv run mypy --strict src/
+```
+
+See [docs/USAGE.md](docs/USAGE.md) for detailed end-user documentation.

wodson-1.0.0/README.md

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+# wodson
+
+A collection of ASAM ODS tools.
+
+## Features
+
+### Experimental ATFX parser
+
+This is an experimental ATFX reader. Target is not correctness or completeness, but a working prototype that can read some real-world ATFX files and be used as a base for further experiments. It currently supports:
+
+- Parses ATFX XML files (ASAM ODS 5.1, 5.3, 6.2 schemas)
+- Reads optional external binary `.dat` files (all standard typespecs)
+- Loads everything into an in-memory SQLite database
+- Exposes `ods.Model` (application model) and `ods.DataMatrices` (data-read)
+- Embeddable Python library (`AtfxStore`)
+- Standalone HTTP server compatible with `odsbox.ConI` (`AtfxServer`)
+- CLI: `uv run wodson atfx serve --file path/to/file.atfx`
+
+## Requirements
+
+- Python ≥ 3.14
+- [`odsbox`](https://pypi.org/project/odsbox/) ≥ 1.2.0
+- [`numpy`](https://numpy.org/) ≥ 2.0
+
+## Installation
+
+```bash
+pip install wodson
+# or with uv:
+uv add wodson
+```
+
+## Quick Start
+
+See [docs/atfx.md](docs/atfx.md) for usage examples (embedded library, HTTP server, CLI).
+
+## Project Layout
+
+```
+src/wodson/
+    __init__.py          Package root
+    _cli.py              CLI entry point (wodson atfx serve …)
+    atfx/
+        __init__.py          Public API (AtfxStore, AtfxServer, AtfxSession, …)
+        _cli.py              atfx subcommand logic
+        base_model/          ASAM ODS base model protobuf JSON files
+                  ODSBaseModel_asam37.protobuf.json
+        _atfx_store.py       AtfxStore — parses + loads ATFX into SQLite
+        _server.py           AtfxServer — ASAM ODS HTTP server
+        _session.py          AtfxSession — in-process requests adapter
+        _base_model.py       Loads ODSBaseModel JSON → ods.BaseModel
+        _model_builder.py    Builds ods.Model from <application_model> XML
+        _instance_parser.py  Parses <instance_data> (inline + external)
+        _binary_reader.py    Reads external .dat binary files via numpy
+        _db.py               SQLite schema creation + instance loading
+        _data_read.py        SelectStatement → SQL → DataMatrices
+        _xml_utils.py        Namespace-aware XML element lookup helpers
+        _naming.py           ODS name → SQLite identifier utilities
+docs/
+    atfx.md              ATFX reader quick-start guide
+    USAGE.md             Full end-user usage guide
+    spec/                ASAM schema files and base model JSON
+tests/                   pytest test suite
+```
+
+## Development
+
+```bash
+# Install with dev dependencies
+uv sync
+
+# Run tests
+uv run pytest tests/ -v
+
+# Lint
+uv run ruff check src/ tests/
+
+# Type check
+uv run mypy --strict src/
+```
+
+See [docs/USAGE.md](docs/USAGE.md) for detailed end-user documentation.

wodson-1.0.0/pyproject.toml

@@ -0,0 +1,96 @@
+[project]
+name = "wodson"
+version = "1.0.0"
+description = "ASAM ODS tools collection — ATFX reader, HTTP server, and more (experimental)"
+readme = "README.md"
+license = "Apache-2.0"
+license-files = ["LICENSE"]
+requires-python = ">=3.14"
+authors = [
+    { name = "Andreas K", email = "totonga@gmail.com" },
+]
+keywords = ["ASAM", "ODS", "ATFX", "measurement data", "protobuf"]
+classifiers = [
+    "Development Status :: 2 - Pre-Alpha",
+    "Intended Audience :: Developers",
+    "Intended Audience :: Science/Research",
+    "Operating System :: OS Independent",
+    "Programming Language :: Python :: 3",
+    "Programming Language :: Python :: 3.14",
+    "Topic :: Scientific/Engineering",
+    "Topic :: Software Development :: Libraries :: Python Modules",
+]
+dependencies = [
+    "numpy>=2.0",
+    "odsbox[oidc]>=1.2.0",
+]
+
+[project.urls]
+Homepage = "https://github.com/totonga/asamatfx"
+Repository = "https://github.com/totonga/asamatfx"
+Issues = "https://github.com/totonga/asamatfx/issues"
+Changelog = "https://github.com/totonga/asamatfx/releases"
+
+[project.scripts]
+wodson = "wodson._cli:main"
+
+[build-system]
+requires = ["uv_build>=0.6,<0.12"]
+build-backend = "uv_build"
+
+[dependency-groups]
+dev = [
+    "mypy>=1.20.2",
+    "pytest>=9.0.3",
+    "pytest-cov>=7.1.0",
+    "python-semantic-release>=9.0.0",
+    "ruff>=0.15.12",
+    "types-protobuf>=7.34.1.20260503",
+    "types-requests>=2.33.0.20260503",
+]
+
+[tool.mypy]
+strict = true
+python_version = "3.14"
+warn_return_any = true
+plugins = []
+
+[[tool.mypy.overrides]]
+module = ["tests.*"]
+disallow_untyped_defs = false
+
+[tool.ruff]
+target-version = "py314"
+line-length = 120
+
+[tool.ruff.lint]
+select = ["E", "F", "I", "UP", "ANN"]
+ignore = ["ANN401"]
+
+[tool.ruff.lint.per-file-ignores]
+"tests/**" = ["ANN"]
+
+[tool.pytest.ini_options]
+pythonpath = ["src"]
+testpaths = ["tests"]
+markers = [
+    "integration: tests that require a live ASAM ODS server",
+    "devtest: tests that require locally available spec files (docs/spec/, not checked in) — excluded from CI",
+]
+
+[tool.setuptools.package-data]
+wodson = ["py.typed"]
+"wodson.atfx" = ["base_model/*"]
+
+[tool.semantic_release]
+version_toml = ["pyproject.toml:project.version"]
+version_variables = ["src/wodson/__init__.py:__version__"]
+tag_format = "v{version}"
+build_command = "uv build"
+
+[tool.semantic_release.branches.main]
+match = "main"
+prerelease = false
+
+[tool.semantic_release.changelog]
+exclude_commit_patterns = ["^Merge", "^chore"]

wodson-1.0.0/src/wodson/__init__.py

@@ -0,0 +1,3 @@
+"""wodson — ASAM ODS tools collection. Use ``wodson.atfx`` for the ATFX reader API."""
+
+__version__ = "1.0.0"

wodson-1.0.0/src/wodson/_cli.py

@@ -0,0 +1,36 @@
+"""Top-level command-line interface for wodson.
+
+Usage::
+
+    uv run wodson atfx serve
+    uv run wodson atfx serve --file path/to/file.atfx
+    uv run wodson atfx serve --file path/to/file.atfx --host 0.0.0.0 --port 8080
+"""
+
+from __future__ import annotations
+
+import argparse
+
+import wodson.atfx._cli as _atfx_cli
+
+
+def _build_parser() -> argparse.ArgumentParser:
+    parser = argparse.ArgumentParser(
+        prog="wodson",
+        description="wodson ASAM ODS command-line tools.",
+    )
+    sub = parser.add_subparsers(dest="module", required=True)
+    _atfx_cli.register_atfx_subparser(sub)
+    return parser
+
+
+def main() -> None:
+    """Entry point for the ``wodson`` CLI command."""
+    parser = _build_parser()
+    args = parser.parse_args()
+    if args.module == "atfx":
+        _atfx_cli.dispatch(args)
+
+
+if __name__ == "__main__":
+    main()

wodson-1.0.0/src/wodson/atfx/__init__.py

@@ -0,0 +1,7 @@
+"""wodson.atfx — ATFX reader with in-memory SQLite backend and ODS data-read API."""
+
+from ._atfx_store import AtfxStore
+from ._server import CONTEXT_VAR_ATFX_FILE, AtfxServer
+from ._session import AtfxSession
+
+__all__ = ["AtfxServer", "AtfxSession", "AtfxStore", "CONTEXT_VAR_ATFX_FILE"]

wodson-1.0.0/src/wodson/atfx/_atfx_store.py

@@ -0,0 +1,142 @@
+"""AtfxStore: main public class for loading and querying ATFX files."""
+
+from __future__ import annotations
+
+import logging
+import sqlite3
+import xml.etree.ElementTree as ET
+from pathlib import Path
+
+import odsbox.proto.ods_pb2 as ods
+
+from ._base_model import load_base_model
+from ._data_read import data_read
+from ._db import create_schema, load_instances
+from ._instance_parser import parse_instances, resolve_external_component_refs
+from ._model_builder import build_model, detect_ods_version
+from ._xml_utils import _find, _findall, _text
+
+_log = logging.getLogger(__name__)
+
+
+class AtfxStore:
+    """Load an ATFX file into an in-memory SQLite database and provide ODS API access.
+
+    Usage::
+
+        store = AtfxStore("path/to/file.atfx")
+        model = store.model()
+        result = store.data_read(select_statement)
+    """
+
+    def __init__(self, file_path: str | Path, base_model_path: Path | None = None) -> None:
+        """Initialize the store by parsing and loading the ATFX file.
+
+        Args:
+            file_path: Path to the .atfx file.
+            base_model_path: Optional path to the base model JSON. Defaults to shipped version.
+        """
+        self._file_path = Path(file_path).resolve()
+        self._atfx_dir = self._file_path.parent
+        _log.info("Loading ATFX file: %s", self._file_path)
+
+        # Parse XML
+        tree = ET.parse(self._file_path)  # noqa: S314
+        root = tree.getroot()
+        _log.debug("XML parsed successfully")
+
+        # Extract version metadata from the XML
+        self._ods_version: str = detect_ods_version(root)
+        self._base_model_version: str = _text(root, "base_model_version")
+        _log.debug(
+            "ODS version: %s, base model version: %s",
+            self._ods_version or "(not detected)",
+            self._base_model_version or "(not set)",
+        )
+
+        # Load base model
+        self._base_model = load_base_model(base_model_path)
+
+        # Build application model
+        self._model = build_model(root, self._base_model)
+
+        # Parse file map from <files> section
+        self._file_map = self._parse_file_map(root)
+        if self._file_map:
+            _log.debug("%d external file(s) mapped", len(self._file_map))
+
+        # Parse instances
+        instances = parse_instances(root, self._model)
+
+        # Resolve AoExternalComponent references (third value-reference pattern)
+        resolve_external_component_refs(self._model, instances, self._file_map, self._atfx_dir)
+
+        # Create in-memory SQLite DB
+        self._conn = sqlite3.connect(":memory:", check_same_thread=False)
+        create_schema(self._conn, self._model)
+        load_instances(self._conn, self._model, instances, self._file_map)
+        _log.info(
+            "AtfxStore ready: %d entities, %d instance groups",
+            len(self._model.entities),
+            len(instances),
+        )
+
+    def model(self) -> ods.Model:
+        """Return the application model as an ods.Model protobuf."""
+        return self._model
+
+    def data_read(self, select_statement: ods.SelectStatement) -> ods.DataMatrices:
+        """Execute a SelectStatement and return DataMatrices.
+
+        This matches the ASAM ODS HTTP API data-read method semantics.
+
+        Args:
+            select_statement: The ODS SelectStatement protobuf.
+
+        Returns:
+            ods.DataMatrices containing the query results.
+        """
+        return data_read(self._conn, self._model, select_statement)
+
+    def context_read(self) -> ods.ContextVariables:
+        """Return context variables for this ATFX session.
+
+        Populated variables:
+
+        * ``ASAM-ODS-VERSION`` -- ODS schema version extracted from the XML
+          namespace, e.g. ``"6.1.0"``.
+        * ``BASE-MODEL-VERSION`` -- value of ``<base_model_version>`` in the
+          ATFX file, e.g. ``"asam35"``.
+        """
+        ctx = ods.ContextVariables()
+        if self._ods_version:
+            ctx.variables["ASAM-ODS-VERSION"].string_array.values.append(self._ods_version)
+        if self._base_model_version:
+            ctx.variables["BASE-MODEL-VERSION"].string_array.values.append(self._base_model_version)
+        return ctx
+
+    def close(self) -> None:
+        """Close the SQLite connection."""
+        _log.debug("Closing AtfxStore for %s", self._file_path)
+        self._conn.close()
+
+    def __enter__(self) -> AtfxStore:
+        return self
+
+    def __exit__(self, *_args: object) -> None:
+        self.close()
+
+    def _parse_file_map(self, root: ET.Element) -> dict[str, Path]:
+        """Parse the <files> section to build identifier -> file path mapping."""
+        file_map: dict[str, Path] = {}
+        files_el = _find(root, "files")
+        if files_el is None:
+            return file_map
+
+        for comp_el in _findall(files_el, "component"):
+            identifier = _text(comp_el, "identifier")
+            filename = _text(comp_el, "filename")
+            if identifier and filename:
+                file_map[identifier] = self._atfx_dir / filename
+
+        return file_map