wikimoth 0.1.0__tar.gz

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  1. wikimoth-0.1.0/LICENSE +201 -0
  2. wikimoth-0.1.0/PKG-INFO +223 -0
  3. wikimoth-0.1.0/README.md +191 -0
  4. wikimoth-0.1.0/pyproject.toml +52 -0
  5. wikimoth-0.1.0/setup.cfg +4 -0
  6. wikimoth-0.1.0/tests/test_benchmark.py +339 -0
  7. wikimoth-0.1.0/tests/test_capture.py +735 -0
  8. wikimoth-0.1.0/tests/test_capture_invariants.py +147 -0
  9. wikimoth-0.1.0/tests/test_realistic_corpus.py +137 -0
  10. wikimoth-0.1.0/tests/test_viewer.py +213 -0
  11. wikimoth-0.1.0/tests/test_wikimoth.py +492 -0
  12. wikimoth-0.1.0/wikimoth/__init__.py +32 -0
  13. wikimoth-0.1.0/wikimoth/benchmark/__init__.py +32 -0
  14. wikimoth-0.1.0/wikimoth/benchmark/baselines.py +154 -0
  15. wikimoth-0.1.0/wikimoth/benchmark/corpus.py +273 -0
  16. wikimoth-0.1.0/wikimoth/benchmark/harness.py +405 -0
  17. wikimoth-0.1.0/wikimoth/capture/__init__.py +39 -0
  18. wikimoth-0.1.0/wikimoth/capture/buffer.py +143 -0
  19. wikimoth-0.1.0/wikimoth/capture/config.py +128 -0
  20. wikimoth-0.1.0/wikimoth/capture/hook.py +116 -0
  21. wikimoth-0.1.0/wikimoth/capture/install.py +168 -0
  22. wikimoth-0.1.0/wikimoth/capture/links.py +217 -0
  23. wikimoth-0.1.0/wikimoth/capture/note.py +274 -0
  24. wikimoth-0.1.0/wikimoth/capture/recall.py +107 -0
  25. wikimoth-0.1.0/wikimoth/cli.py +166 -0
  26. wikimoth-0.1.0/wikimoth/compaction.py +148 -0
  27. wikimoth-0.1.0/wikimoth/hybrid.py +174 -0
  28. wikimoth-0.1.0/wikimoth/pipeline.py +389 -0
  29. wikimoth-0.1.0/wikimoth/reader.py +135 -0
  30. wikimoth-0.1.0/wikimoth/retrieval/__init__.py +32 -0
  31. wikimoth-0.1.0/wikimoth/retrieval/chunk.py +32 -0
  32. wikimoth-0.1.0/wikimoth/retrieval/chunking.py +58 -0
  33. wikimoth-0.1.0/wikimoth/retrieval/graph.py +301 -0
  34. wikimoth-0.1.0/wikimoth/tokens.py +59 -0
  35. wikimoth-0.1.0/wikimoth/viewer.py +470 -0
  36. wikimoth-0.1.0/wikimoth.egg-info/PKG-INFO +223 -0
  37. wikimoth-0.1.0/wikimoth.egg-info/SOURCES.txt +39 -0
  38. wikimoth-0.1.0/wikimoth.egg-info/dependency_links.txt +1 -0
  39. wikimoth-0.1.0/wikimoth.egg-info/entry_points.txt +2 -0
  40. wikimoth-0.1.0/wikimoth.egg-info/requires.txt +21 -0
  41. wikimoth-0.1.0/wikimoth.egg-info/top_level.txt +1 -0
wikimoth-0.1.0/LICENSE ADDED
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@@ -0,0 +1,223 @@
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+ Metadata-Version: 2.4
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+ Name: wikimoth
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+ Version: 0.1.0
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+ Summary: Deterministic, token-minimal, reproducible memory for Claude and agents: wikilink-graph retrieval, then compaction, then a Claude reader.
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+ Author: Julian Geymonat
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+ License: Apache-2.0
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+ Project-URL: Homepage, https://github.com/juliangeymonat-jpg/wikimoth
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+ Keywords: rag,memory,agents,claude,wikilinks,multi-hop,deterministic
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+ Classifier: Programming Language :: Python :: 3
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+ Classifier: License :: OSI Approved :: Apache Software License
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+ Classifier: Intended Audience :: Developers
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+ Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
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+ Requires-Python: >=3.10
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+ Description-Content-Type: text/markdown
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+ License-File: LICENSE
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+ Provides-Extra: hybrid
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+ Requires-Dist: rank_bm25; extra == "hybrid"
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+ Provides-Extra: dense
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+ Requires-Dist: transformers; extra == "dense"
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+ Requires-Dist: torch; extra == "dense"
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+ Requires-Dist: numpy; extra == "dense"
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+ Provides-Extra: claude
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+ Requires-Dist: anthropic; extra == "claude"
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+ Provides-Extra: tokens
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+ Requires-Dist: tiktoken; extra == "tokens"
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+ Provides-Extra: headroom
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+ Requires-Dist: headroom; extra == "headroom"
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+ Provides-Extra: dev
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+ Requires-Dist: pytest>=7; extra == "dev"
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+ Requires-Dist: rank_bm25; extra == "dev"
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+ Dynamic: license-file
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+
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+ # WikiMoth
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+
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+ ### Connects the dots. The same way, every time.
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+
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+ **Deterministic, token-minimal, auditable memory for Claude and agents.** Point WikiMoth at a
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+ folder of `[[wikilink]]` notes (an Obsidian vault, or Claude's own memory folder) and it
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+ follows the authored links to the answer flat search can't reach, shows you the exact note-chain
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+ behind it, and feeds the reader ~99% fewer tokens than pasting the whole vault. Pure markdown,
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+ no GPU, no vector DB, no LLM in the retrieval loop.
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+
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+ ```bash
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+ pip install wikimoth
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+ wikimoth install # capture: turn your Claude Code sessions into a [[wikilink]] vault
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+ wikimoth serve # browse the vault + see "what memory fed this answer"
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+ ```
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+
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+ ---
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+
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+ ## Why WikiMoth
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+
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+ Most agent memory is either *paste the whole notes folder into context* (expensive, and the model
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+ gets lost in the middle) or *LLM-summarised similarity search* (lossy, and non-deterministic:
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+ the same question can return different memory next week). WikiMoth takes a different bet: your notes
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+ **are** the store (plain markdown), the graph is **authored** (your `[[wikilinks]]`, no embeddings
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+ to train or drift), and retrieval is **code, not a model**, so it's reproducible and you can read
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+ exactly why each note was chosen.
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+
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+ | | **WikiMoth** | BM25 | Vector RAG | claude-mem | LLM Wiki (Karpathy) |
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+ |---|:--:|:--:|:--:|:--:|:--:|
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+ | Connects the dots (multi-hop over authored `[[links]]`) | ✅ | ❌ | ❌ | ❌ | ✅ *(agentic)* |
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+ | Deterministic retrieval (same query → same result) | ✅ | ✅ | ✅ | ❌ | ❌ |
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+ | No LLM call to retrieve | ✅ | ✅ | ✅ | ~ | ❌ |
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+ | Auditable note-chain (which notes produced the answer) | ✅ | ~ | ❌ | ❌ | ~ |
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+ | Direct-lookup recall@8 (real vault) | 1.00 | 1.00 | 1.00 | ~ | ~ |
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+ | No GPU / no vector DB / no index build | ✅ | ✅ | ❌ | ~ | ✅ |
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+ | Plain-markdown store (open in any editor) | ✅ | ~ | ❌ | ❌ | ✅ |
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+ | Token-minimal vs dumping the vault | ✅ −99% | ✅ −99% | ✅ −99% | ✅ | ~ |
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+ | Deterministic, API-free auto-capture | ✅ | ❌ | ❌ | ❌ | ❌ |
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+
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+ <sub>LLM Wiki *follows* links and skips the vector DB like WikiMoth, but an **LLM writes and reads** the wiki, so retrieval is agentic (an LLM call per recall, not reproducible), while its curated pages are richer. `~` = partial / not independently benchmarked.</sub>
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+
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+ The edge is the **combination**, not higher recall: WikiMoth *matches* flat search on the basics and
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+ adds connect-the-dots + determinism + an audit trail + a plain-markdown store. See
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+ [Honest limits](#honest-limits) for exactly where it ties and where it wins.
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+
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+ ### Compared to Karpathy's LLM Wiki
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+
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+ WikiMoth shares the substrate Andrej Karpathy's *LLM Wiki* pattern popularised: plain-markdown
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+ `[[wikilink]]` notes, no vector DB, but flips the **engine**. In the LLM-Wiki pattern an **LLM
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+ writes *and* reads** the wiki: rich, source-cited pages, but recall is *agentic* (it costs an LLM
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+ call and the path isn't reproducible). WikiMoth computes the edges in **code** and retrieves with a
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+ **fixed algorithm, no LLM in the loop** → the same note-chain every time, reproducible and
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+ auditable. They're complementary, not competing: point WikiMoth at a Karpathy-style wiki and you get
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+ deterministic multi-hop retrieval over it. (We don't claim to be "better" than the LLM Wiki: it
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+ curates richer pages; we retrieve deterministically.)
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+
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+ ## Quickstart (read)
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+
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+ ```python
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+ from wikimoth import MemoryRAG, EchoReader
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+
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+ rag = MemoryRAG(reader=EchoReader()) # API-free default reader
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+ rag.index("path/to/your/wikilink/vault") # notes → ~400-token chunks, graph built
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+
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+ chunks, tokens = rag.retrieve("a connect-the-dots question?", top_k=8)
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+ print(f"{len(chunks)} chunks, {tokens} tokens to feed the reader")
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+
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+ print(rag.answer("a connect-the-dots question?")) # retrieve → compact → read
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+ ```
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+
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+ Swap in a real Claude answer (only touches the API when constructed):
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+
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+ ```python
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+ from wikimoth import MemoryRAG, ClaudeReader
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+ rag = MemoryRAG(reader=ClaudeReader(model="claude-sonnet-4-6")) # needs ANTHROPIC_API_KEY
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+ ```
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+
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+ ## See what memory fed an answer: `wikimoth serve`
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+
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+ ```bash
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+ wikimoth serve # serves http://127.0.0.1:8765 (local-only)
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+ wikimoth serve --vault PATH --port 8080
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+ ```
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+
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+ A zero-dependency local web viewer (pure stdlib, no Flask, no JS framework, no network):
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+
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+ - **browse + search** your notes,
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+ - the authored **`[[wikilink]]` graph** (the same edges the retriever walks),
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+ - and the one that matters, **"what memory fed this answer"**: type a question and see the exact
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+ note-chain WikiMoth would feed a reader, with per-chunk hop distance, token counts, and the `−N%`
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+ vs dumping the whole vault. Retrieval only: no LLM call, no API key, deterministic.
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+
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+ Because the store is plain markdown, you can equally open the same vault in Obsidian or VS Code;
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+ the viewer is a convenience, not a lock-in.
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+
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+ ## Capture: sessions → notes (the write half)
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+
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+ Retrieval needs a `[[wikilink]]` vault; hand-authoring one is the friction. `wikimoth.capture` builds
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+ it automatically by installing Claude Code lifecycle hooks that turn each session into **one**
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+ deterministic markdown note.
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+
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+ **The invariant that matters:** a note's `[[wikilinks]]` (the graph edges) are computed by code
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+ (string/path matching), **never by a model**. An LLM may *optionally* draft the summary prose
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+ (`WIKIMOTH_LLM_PROSE=1`), but any `[[...]]` it emits is stripped, never parsed as an edge. So the
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+ graph is reproducible (same session + vault → same edges) and auditable. Default capture is fully
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+ deterministic and makes **zero API calls**.
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+
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+ ```bash
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+ wikimoth install # writes 5 hooks into ./.claude/settings.json (absolute interpreter path)
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+ wikimoth install --user # ~/.claude/settings.json instead
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+ wikimoth install --vault PATH # choose where notes go (sets WIKIMOTH_VAULT)
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+ wikimoth status # vault, note/session/buffer counts, hook state
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+ wikimoth uninstall # remove the hooks again
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+ ```
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+
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+ Lifecycle: **SessionStart** recalls recent sessions into context · **UserPromptSubmit / PostToolUse**
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+ buffer the session · **Stop / SessionEnd** write one note. The captured notes are exactly what the
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+ read pipeline indexes; capture and retrieval close the loop.
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+
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+ ## Install
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+
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+ WikiMoth's core is **pure stdlib** (`dependencies = []`): the retrieval engine, chunker, wikilink
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+ graph, pipeline and capture are all vendored under `wikimoth/`: nothing extra to install, no GPU, no
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+ vector DB.
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+
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+ ```bash
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+ pip install wikimoth
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+ # before the PyPI release, install from source:
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+ pip install "git+https://github.com/juliangeymonat-jpg/wikimoth"
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+ # optional extras:
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+ pip install "wikimoth[hybrid]" # BM25-seeded HybridRetriever (best direct-lookup + multi-hop)
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+ pip install "wikimoth[claude,tokens]" # real Claude reader + exact tiktoken counts
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+ ```
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+
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+ Extras: `hybrid` = BM25-seeded retriever (`rank_bm25`) · `claude` = the `anthropic` reader ·
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+ `tokens` = exact token counts (`tiktoken`) · `dense` = the dense benchmark baseline · `headroom` =
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+ reversible CCR compaction.
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+
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+ ## How it works
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+
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+ **retrieve → compact → read.** `index()` splits each note into ~400-token chunks (~50 overlap),
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+ keeping per-chunk note identity so the `[[wikilink]]` graph still connects across chunks (multi-hop
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+ at chunk granularity). `GraphRetriever(source="wikilinks")` seeds lexically, then walks the authored
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+ links, so a passage *not* lexically similar to the question but *reachable by a link* still gets
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+ pulled. An optional compaction stage (reversible CCR via
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+ [`chopratejas/headroom`](https://github.com/chopratejas/headroom)) shrinks passages further before
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+ the (paid) reader; it degrades to a no-op if headroom isn't installed.
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+
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+ A pure-navigation hub (a table-of-contents like `MEMORY.md`) can be indexed as **graph edges only**
182
+ (`exclude_content`, default `("MEMORY.md",)`): its `[[links]]` build edges and it stays a BFS
183
+ waypoint, but its own chunks never reach the reader.
184
+
185
+ Every stage is constructor-injectable via `MemoryRAG(retriever=…, compactor=…, reader=…)`, so you can
186
+ swap the retriever (e.g. the BM25-seeded `HybridRetriever`), the compactor, or the reader.
187
+
188
+ ## Benchmark: tokens fed to the reader
189
+
190
+ `wikimoth.benchmark.harness` measures *tokens fed to the reader* (what you actually pay for) across
191
+ arms over the **same** vault and questions:
192
+
193
+ | arm | feeds the reader | status |
194
+ |---|---|---|
195
+ | `dump` | the whole vault | baseline |
196
+ | `deterministic` | wikilink-graph retrieval | implemented |
197
+ | `deterministic_compacted` | retrieval + Headroom | implemented |
198
+ | `agentic` | an LLM iteratively browses & picks | stub (needs LLM tool-calls) |
199
+
200
+ No paid API calls run by default; every arm's reader defaults to the API-free `EchoReader`.
201
+
202
+ ## Honest limits
203
+
204
+ WikiMoth's value is **deterministic, auditable, token-minimal, plain-markdown** memory with a real
205
+ multi-hop capability, not "better retrieval than BM25". Specifically:
206
+
207
+ - **The −99% is vs *dumping the vault*** (≈5k vs ~482k tokens on a real 356-note vault), not vs
208
+ BM25: a tuned BM25-RAG also feeds ~5k. The win is against the realistic status quo (paste
209
+ everything / naive whole-note RAG), and it's deterministic.
210
+ - **On a typical real vault, retrieval ≈ BM25.** Direct-lookup recall@8 ties at 1.00. The
211
+ multi-hop / connect-the-dots win (0% → up to 100% where flat search scores zero) shows up on
212
+ **curated, link-heavy** corpora; on an average vault, hybrid is *never worse than BM25*, not
213
+ strictly better on recall.
214
+ - **Determinism** is inherent to any static retriever (BM25/dense too); WikiMoth's determinism win is
215
+ specifically **vs LLM-summarised memory** (which varies run to run).
216
+ - The `agentic` benchmark arm and a published large-scale capture dogfood are not done yet.
217
+
218
+ ## Pluggable + License
219
+
220
+ `MemoryRAG(retriever=…, compactor=…, reader=…)`; defaults `GraphRetriever(source="wikilinks")` /
221
+ `NoOpCompactor` / `EchoReader`. Anything satisfying the small Protocols drops in.
222
+
223
+ Apache-2.0; see [LICENSE](LICENSE). © 2026 Julian Geymonat.
@@ -0,0 +1,191 @@
1
+ # WikiMoth
2
+
3
+ ### Connects the dots. The same way, every time.
4
+
5
+ **Deterministic, token-minimal, auditable memory for Claude and agents.** Point WikiMoth at a
6
+ folder of `[[wikilink]]` notes (an Obsidian vault, or Claude's own memory folder) and it
7
+ follows the authored links to the answer flat search can't reach, shows you the exact note-chain
8
+ behind it, and feeds the reader ~99% fewer tokens than pasting the whole vault. Pure markdown,
9
+ no GPU, no vector DB, no LLM in the retrieval loop.
10
+
11
+ ```bash
12
+ pip install wikimoth
13
+ wikimoth install # capture: turn your Claude Code sessions into a [[wikilink]] vault
14
+ wikimoth serve # browse the vault + see "what memory fed this answer"
15
+ ```
16
+
17
+ ---
18
+
19
+ ## Why WikiMoth
20
+
21
+ Most agent memory is either *paste the whole notes folder into context* (expensive, and the model
22
+ gets lost in the middle) or *LLM-summarised similarity search* (lossy, and non-deterministic:
23
+ the same question can return different memory next week). WikiMoth takes a different bet: your notes
24
+ **are** the store (plain markdown), the graph is **authored** (your `[[wikilinks]]`, no embeddings
25
+ to train or drift), and retrieval is **code, not a model**, so it's reproducible and you can read
26
+ exactly why each note was chosen.
27
+
28
+ | | **WikiMoth** | BM25 | Vector RAG | claude-mem | LLM Wiki (Karpathy) |
29
+ |---|:--:|:--:|:--:|:--:|:--:|
30
+ | Connects the dots (multi-hop over authored `[[links]]`) | ✅ | ❌ | ❌ | ❌ | ✅ *(agentic)* |
31
+ | Deterministic retrieval (same query → same result) | ✅ | ✅ | ✅ | ❌ | ❌ |
32
+ | No LLM call to retrieve | ✅ | ✅ | ✅ | ~ | ❌ |
33
+ | Auditable note-chain (which notes produced the answer) | ✅ | ~ | ❌ | ❌ | ~ |
34
+ | Direct-lookup recall@8 (real vault) | 1.00 | 1.00 | 1.00 | ~ | ~ |
35
+ | No GPU / no vector DB / no index build | ✅ | ✅ | ❌ | ~ | ✅ |
36
+ | Plain-markdown store (open in any editor) | ✅ | ~ | ❌ | ❌ | ✅ |
37
+ | Token-minimal vs dumping the vault | ✅ −99% | ✅ −99% | ✅ −99% | ✅ | ~ |
38
+ | Deterministic, API-free auto-capture | ✅ | ❌ | ❌ | ❌ | ❌ |
39
+
40
+ <sub>LLM Wiki *follows* links and skips the vector DB like WikiMoth, but an **LLM writes and reads** the wiki, so retrieval is agentic (an LLM call per recall, not reproducible), while its curated pages are richer. `~` = partial / not independently benchmarked.</sub>
41
+
42
+ The edge is the **combination**, not higher recall: WikiMoth *matches* flat search on the basics and
43
+ adds connect-the-dots + determinism + an audit trail + a plain-markdown store. See
44
+ [Honest limits](#honest-limits) for exactly where it ties and where it wins.
45
+
46
+ ### Compared to Karpathy's LLM Wiki
47
+
48
+ WikiMoth shares the substrate Andrej Karpathy's *LLM Wiki* pattern popularised: plain-markdown
49
+ `[[wikilink]]` notes, no vector DB, but flips the **engine**. In the LLM-Wiki pattern an **LLM
50
+ writes *and* reads** the wiki: rich, source-cited pages, but recall is *agentic* (it costs an LLM
51
+ call and the path isn't reproducible). WikiMoth computes the edges in **code** and retrieves with a
52
+ **fixed algorithm, no LLM in the loop** → the same note-chain every time, reproducible and
53
+ auditable. They're complementary, not competing: point WikiMoth at a Karpathy-style wiki and you get
54
+ deterministic multi-hop retrieval over it. (We don't claim to be "better" than the LLM Wiki: it
55
+ curates richer pages; we retrieve deterministically.)
56
+
57
+ ## Quickstart (read)
58
+
59
+ ```python
60
+ from wikimoth import MemoryRAG, EchoReader
61
+
62
+ rag = MemoryRAG(reader=EchoReader()) # API-free default reader
63
+ rag.index("path/to/your/wikilink/vault") # notes → ~400-token chunks, graph built
64
+
65
+ chunks, tokens = rag.retrieve("a connect-the-dots question?", top_k=8)
66
+ print(f"{len(chunks)} chunks, {tokens} tokens to feed the reader")
67
+
68
+ print(rag.answer("a connect-the-dots question?")) # retrieve → compact → read
69
+ ```
70
+
71
+ Swap in a real Claude answer (only touches the API when constructed):
72
+
73
+ ```python
74
+ from wikimoth import MemoryRAG, ClaudeReader
75
+ rag = MemoryRAG(reader=ClaudeReader(model="claude-sonnet-4-6")) # needs ANTHROPIC_API_KEY
76
+ ```
77
+
78
+ ## See what memory fed an answer: `wikimoth serve`
79
+
80
+ ```bash
81
+ wikimoth serve # serves http://127.0.0.1:8765 (local-only)
82
+ wikimoth serve --vault PATH --port 8080
83
+ ```
84
+
85
+ A zero-dependency local web viewer (pure stdlib, no Flask, no JS framework, no network):
86
+
87
+ - **browse + search** your notes,
88
+ - the authored **`[[wikilink]]` graph** (the same edges the retriever walks),
89
+ - and the one that matters, **"what memory fed this answer"**: type a question and see the exact
90
+ note-chain WikiMoth would feed a reader, with per-chunk hop distance, token counts, and the `−N%`
91
+ vs dumping the whole vault. Retrieval only: no LLM call, no API key, deterministic.
92
+
93
+ Because the store is plain markdown, you can equally open the same vault in Obsidian or VS Code;
94
+ the viewer is a convenience, not a lock-in.
95
+
96
+ ## Capture: sessions → notes (the write half)
97
+
98
+ Retrieval needs a `[[wikilink]]` vault; hand-authoring one is the friction. `wikimoth.capture` builds
99
+ it automatically by installing Claude Code lifecycle hooks that turn each session into **one**
100
+ deterministic markdown note.
101
+
102
+ **The invariant that matters:** a note's `[[wikilinks]]` (the graph edges) are computed by code
103
+ (string/path matching), **never by a model**. An LLM may *optionally* draft the summary prose
104
+ (`WIKIMOTH_LLM_PROSE=1`), but any `[[...]]` it emits is stripped, never parsed as an edge. So the
105
+ graph is reproducible (same session + vault → same edges) and auditable. Default capture is fully
106
+ deterministic and makes **zero API calls**.
107
+
108
+ ```bash
109
+ wikimoth install # writes 5 hooks into ./.claude/settings.json (absolute interpreter path)
110
+ wikimoth install --user # ~/.claude/settings.json instead
111
+ wikimoth install --vault PATH # choose where notes go (sets WIKIMOTH_VAULT)
112
+ wikimoth status # vault, note/session/buffer counts, hook state
113
+ wikimoth uninstall # remove the hooks again
114
+ ```
115
+
116
+ Lifecycle: **SessionStart** recalls recent sessions into context · **UserPromptSubmit / PostToolUse**
117
+ buffer the session · **Stop / SessionEnd** write one note. The captured notes are exactly what the
118
+ read pipeline indexes; capture and retrieval close the loop.
119
+
120
+ ## Install
121
+
122
+ WikiMoth's core is **pure stdlib** (`dependencies = []`): the retrieval engine, chunker, wikilink
123
+ graph, pipeline and capture are all vendored under `wikimoth/`: nothing extra to install, no GPU, no
124
+ vector DB.
125
+
126
+ ```bash
127
+ pip install wikimoth
128
+ # before the PyPI release, install from source:
129
+ pip install "git+https://github.com/juliangeymonat-jpg/wikimoth"
130
+ # optional extras:
131
+ pip install "wikimoth[hybrid]" # BM25-seeded HybridRetriever (best direct-lookup + multi-hop)
132
+ pip install "wikimoth[claude,tokens]" # real Claude reader + exact tiktoken counts
133
+ ```
134
+
135
+ Extras: `hybrid` = BM25-seeded retriever (`rank_bm25`) · `claude` = the `anthropic` reader ·
136
+ `tokens` = exact token counts (`tiktoken`) · `dense` = the dense benchmark baseline · `headroom` =
137
+ reversible CCR compaction.
138
+
139
+ ## How it works
140
+
141
+ **retrieve → compact → read.** `index()` splits each note into ~400-token chunks (~50 overlap),
142
+ keeping per-chunk note identity so the `[[wikilink]]` graph still connects across chunks (multi-hop
143
+ at chunk granularity). `GraphRetriever(source="wikilinks")` seeds lexically, then walks the authored
144
+ links, so a passage *not* lexically similar to the question but *reachable by a link* still gets
145
+ pulled. An optional compaction stage (reversible CCR via
146
+ [`chopratejas/headroom`](https://github.com/chopratejas/headroom)) shrinks passages further before
147
+ the (paid) reader; it degrades to a no-op if headroom isn't installed.
148
+
149
+ A pure-navigation hub (a table-of-contents like `MEMORY.md`) can be indexed as **graph edges only**
150
+ (`exclude_content`, default `("MEMORY.md",)`): its `[[links]]` build edges and it stays a BFS
151
+ waypoint, but its own chunks never reach the reader.
152
+
153
+ Every stage is constructor-injectable via `MemoryRAG(retriever=…, compactor=…, reader=…)`, so you can
154
+ swap the retriever (e.g. the BM25-seeded `HybridRetriever`), the compactor, or the reader.
155
+
156
+ ## Benchmark: tokens fed to the reader
157
+
158
+ `wikimoth.benchmark.harness` measures *tokens fed to the reader* (what you actually pay for) across
159
+ arms over the **same** vault and questions:
160
+
161
+ | arm | feeds the reader | status |
162
+ |---|---|---|
163
+ | `dump` | the whole vault | baseline |
164
+ | `deterministic` | wikilink-graph retrieval | implemented |
165
+ | `deterministic_compacted` | retrieval + Headroom | implemented |
166
+ | `agentic` | an LLM iteratively browses & picks | stub (needs LLM tool-calls) |
167
+
168
+ No paid API calls run by default; every arm's reader defaults to the API-free `EchoReader`.
169
+
170
+ ## Honest limits
171
+
172
+ WikiMoth's value is **deterministic, auditable, token-minimal, plain-markdown** memory with a real
173
+ multi-hop capability, not "better retrieval than BM25". Specifically:
174
+
175
+ - **The −99% is vs *dumping the vault*** (≈5k vs ~482k tokens on a real 356-note vault), not vs
176
+ BM25: a tuned BM25-RAG also feeds ~5k. The win is against the realistic status quo (paste
177
+ everything / naive whole-note RAG), and it's deterministic.
178
+ - **On a typical real vault, retrieval ≈ BM25.** Direct-lookup recall@8 ties at 1.00. The
179
+ multi-hop / connect-the-dots win (0% → up to 100% where flat search scores zero) shows up on
180
+ **curated, link-heavy** corpora; on an average vault, hybrid is *never worse than BM25*, not
181
+ strictly better on recall.
182
+ - **Determinism** is inherent to any static retriever (BM25/dense too); WikiMoth's determinism win is
183
+ specifically **vs LLM-summarised memory** (which varies run to run).
184
+ - The `agentic` benchmark arm and a published large-scale capture dogfood are not done yet.
185
+
186
+ ## Pluggable + License
187
+
188
+ `MemoryRAG(retriever=…, compactor=…, reader=…)`; defaults `GraphRetriever(source="wikilinks")` /
189
+ `NoOpCompactor` / `EchoReader`. Anything satisfying the small Protocols drops in.
190
+
191
+ Apache-2.0; see [LICENSE](LICENSE). © 2026 Julian Geymonat.
@@ -0,0 +1,52 @@
1
+ [build-system]
2
+ requires = ["setuptools>=68", "wheel"]
3
+ build-backend = "setuptools.build_meta"
4
+
5
+ [project]
6
+ name = "wikimoth"
7
+ version = "0.1.0"
8
+ description = "Deterministic, token-minimal, reproducible memory for Claude and agents: wikilink-graph retrieval, then compaction, then a Claude reader."
9
+ readme = "README.md"
10
+ requires-python = ">=3.10"
11
+ license = { text = "Apache-2.0" }
12
+ authors = [{ name = "Julian Geymonat" }]
13
+ keywords = ["rag", "memory", "agents", "claude", "wikilinks", "multi-hop", "deterministic"]
14
+ classifiers = [
15
+ "Programming Language :: Python :: 3",
16
+ "License :: OSI Approved :: Apache Software License",
17
+ "Intended Audience :: Developers",
18
+ "Topic :: Scientific/Engineering :: Artificial Intelligence",
19
+ ]
20
+
21
+ # Core WikiMoth is PURE STDLIB — retrieval (GraphRetriever), chunking, the
22
+ # wikilink graph, the pipeline and capture are all vendored in wikimoth/retrieval/
23
+ # (Julian's own Apache-2.0 code). No hard runtime dependency; everything below
24
+ # is opt-in via extras and import-guarded.
25
+ dependencies = []
26
+
27
+ [project.optional-dependencies]
28
+ # BM25-seeded HybridRetriever (the v2 default for best direct-lookup + multi-hop).
29
+ hybrid = ["rank_bm25"]
30
+ # Dense (semantic) baseline used in the benchmark comparison.
31
+ dense = ["transformers", "torch", "numpy"]
32
+ # Real Claude reader (otherwise EchoReader, the API-free default, is used).
33
+ claude = ["anthropic"]
34
+ # Most representative token counting (else a len//4 estimate is used).
35
+ tokens = ["tiktoken"]
36
+ # Reversible CCR compaction (chopratejas/headroom, Apache-2.0); import-guarded.
37
+ headroom = ["headroom"]
38
+ dev = ["pytest>=7", "rank_bm25"]
39
+
40
+ [project.scripts]
41
+ # `wikimoth install` wires the capture hooks into Claude Code's settings.json
42
+ # (the pip-native equivalent of `npx <tool> install`).
43
+ wikimoth = "wikimoth.cli:main"
44
+
45
+ [project.urls]
46
+ Homepage = "https://github.com/juliangeymonat-jpg/wikimoth"
47
+
48
+ [tool.setuptools.packages.find]
49
+ include = ["wikimoth*"]
50
+
51
+ [tool.pytest.ini_options]
52
+ testpaths = ["tests"]
@@ -0,0 +1,4 @@
1
+ [egg_info]
2
+ tag_build =
3
+ tag_date = 0
4
+