whodoneit 2026.41.2__tar.gz

whodoneit-2026.41.2/.biobuddies/autoformat-excludes

@@ -0,0 +1,19 @@
+# AUTOGENERATED from https://github.com/biobuddies/measles
+# Extend from .config/autoformat-excludes
+
+# Cookiecutter outputs
+^\.biobuddies$
+^\.biobuddies/
+^\.editorconfig$
+^\.github/copilot-instructions\.md$
+^\.github/pull_request_template\.md$
+^\.gitignore$
+^\.prettierrc\.toml$
+^mise\.toml$
+^package-lock\.json$
+^package\.json$
+^pyproject\.toml$
+^requirements\.txt$
+^\.shellcheckrc$
+^\.yamllint\.yaml$
+^\{\{cookiecutter\.dot\}\}/

whodoneit-2026.41.2/.biobuddies/basedpyright.toml

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+[tool.basedpyright]
+failOnWarnings = false
+reportUnusedCallResult = false # _ = function() is silly

whodoneit-2026.41.2/.biobuddies/ruff.toml

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+line-length = 100
+target-version = 'py312'
+
+[format]
+docstring-code-format = true
+preview = true
+quote-style = 'single'
+skip-magic-trailing-comma = true
+
+[lint]
+external = ['typos']
+fixable = ['ALL']
+ignore = [
+    'ANN401', # `**kwargs: Any` is reasonable
+    'BLE001', # except Exception is okay
+    'COM812', # Insists on `join([],)` over `join([])`
+    'CPY001', # Git records authors and dates
+    'D101',
+    'D103',
+    'D104',
+    'D107',
+    'EM101',  # Simple code is more important than simple tracebacks
+    'EM102',  # Simple code is more important than simple tracebacks
+    'FBT001', # What is bad about Boolean parameters?
+    'FIX002', # Don't make the perfect the enemy of the good
+    'INP001',
+    # Demystify magic values with good variable names, comments, or other context. Follow
+    # Rule Of Three for when to abstract.
+    'PLR2004',
+    'Q000',    # ruff format will single quote
+    'Q001',    # ruff format will single quote
+    'Q003',    # ruff format will single quote
+    # N806 tries to lowercase classes; currently ignored on a line-by-line basis
+    'S607',   # Using $PATH is pretty necessary for nvmrc, pyenv, venv, tfenv
+    'SLF001', # Private member access is probably a last resort
+    'TD002',  # The git log records who wrote a TODO line
+    'TD003',  # Don't require issue links
+    'TD004',  # A colon takes up space without really improving readability
+    'TRY002', # Forces premature specialization; the right time to subclass is when the exception starts being caught
+    'TRY003', # Forces premature specialization; the right time to subclass is when the exception starts being caught
+    'UP031',  # Percent formatting can simplify curly-heavy strings
+]
+select = ['ALL']
+
+[lint.flake8-pytest-style]
+parametrize-values-row-type = 'tuple'
+parametrize-values-type = 'tuple'
+
+[lint.isort]
+split-on-trailing-comma = false
+
+[lint.per-file-ignores]
+'**/{conftest,test*}.py' = [
+    'ANN201',  # -> None doesn't improve pytest functions
+    'N802',    # Test functions can match class names
+    'PLR2004', # Tests can have magic values
+    'PLR6301', # Test classes can ignore self
+    'PT013',   # `import pytest` would be inconsistent with other imports
+    'S101',    # Tests can have assertions
+    'S105',    # Testing authentication is good
+    'S603',    # Tests can call subprocesses
+]
+
+[lint.pydocstyle]
+convention = 'pep257'

whodoneit-2026.41.2/.biobuddies/typos.toml

@@ -0,0 +1,19 @@
+[default]
+locale = 'en-us'
+extend-ignore-re = ['(?Rm)^.*(#|//) *noqa(: *typos)?$']
+
+[default.extend-identifiers]
+'CPY001' = 'CPY001'
+'IDentifier' = 'IDentifier' # Capitalization explaining UUID
+'iTerm2' = 'iTerm2'
+
+[default.extend-words]
+'yml' = 'yaml' # http://www.yaml.org/faq.html
+'µ' = 'μ' # 0xb5 micro sign to 0x3bc Greek small mu
+'adoptors' = 'adoptors'
+
+[files]
+extend-exclude = ['node_modules/**']
+ignore-global = true
+ignore-parent = true
+ignore-vcs = true

whodoneit-2026.41.2/.claude/hooks/session-start.sh

@@ -0,0 +1,7 @@
+#!/bin/bash
+# Single repository sessions run this automatically. Multi repository sessions start in the
+# parent directory, finding no .claude, so their environment setup script must run setup.bash.
+set -o errexit -o nounset -o pipefail
+# Laptops already have mise and its tools installed.
+[ "${CLAUDE_CODE_REMOTE:-}" = true ] || exit 0
+exec "$CLAUDE_PROJECT_DIR/.config/setup.bash"

whodoneit-2026.41.2/.claude/settings.json

@@ -0,0 +1,19 @@
+{
+    "attribution": {
+        "commit": "",
+        "pr": "",
+        "sessionUrl": false
+    },
+    "hooks": {
+        "SessionStart": [
+            {
+                "hooks": [
+                    {
+                        "type": "command",
+                        "command": "$CLAUDE_PROJECT_DIR/.claude/hooks/session-start.sh"
+                    }
+                ]
+            }
+        ]
+    }
+}

whodoneit-2026.41.2/.codex/setup.sh

@@ -0,0 +1,3 @@
+#!/bin/bash
+set -o errexit -o nounset -o pipefail
+exec "$(dirname "$0")/../.config/setup.bash"

whodoneit-2026.41.2/.config/autoformat-excludes

@@ -0,0 +1 @@
+^fossil-source/

whodoneit-2026.41.2/.config/mise.lock

@@ -0,0 +1,98 @@
+# @generated - this file is auto-generated by `mise lock` https://mise.jdx.dev/dev-tools/mise-lock.html
+
+lockfile_version = 1
+
+[[tools."github:github/gh-stack"]]
+version = "0.2.0"
+backend = "github:github/gh-stack"
+specifiers = ["0.2.0"]
+
+[tools."github:github/gh-stack"."platforms.linux-arm64"]
+checksum = "sha256:d29684746f337a580667605b34877e5624792bcc390e61473a050bd4839557bf"
+url = "https://github.com/github/gh-stack/releases/download/v0.2.0/linux-arm64"
+url_api = "https://api.github.com/repos/github/gh-stack/releases/assets/606428372"
+
+[tools."github:github/gh-stack"."platforms.linux-x64"]
+checksum = "sha256:577065033b49d4505730ea0ad43ab1b0374b0d9b1308e9765647a6aa8eba3cb7"
+url = "https://github.com/github/gh-stack/releases/download/v0.2.0/linux-amd64"
+url_api = "https://api.github.com/repos/github/gh-stack/releases/assets/606428373"
+
+[tools."github:github/gh-stack"."platforms.macos-arm64"]
+checksum = "sha256:d8033f653f2b98d08e36e423f79d4f243653186b9c1cbe8310397dba5d6ac71e"
+url = "https://github.com/github/gh-stack/releases/download/v0.2.0/darwin-arm64"
+url_api = "https://api.github.com/repos/github/gh-stack/releases/assets/606428322"
+
+[tools."github:github/gh-stack"."platforms.macos-x64"]
+checksum = "sha256:22ddb2887934316b610e4d16a0c81cdd39e659aad29a0e0fd14e6f7d0f80317a"
+url = "https://github.com/github/gh-stack/releases/download/v0.2.0/darwin-amd64"
+url_api = "https://api.github.com/repos/github/gh-stack/releases/assets/606428320"
+
+[[tools.lychee]]
+version = "0.23.0"
+backend = "aqua:lycheeverse/lychee"
+specifiers = ["0.23.0"]
+
+[tools.lychee."platforms.linux-arm64"]
+checksum = "sha256:97eb93b02a7d78a752fc33e5b0983439ccaadbf3db952b68a0a4401acd92e6e0"
+url = "https://github.com/lycheeverse/lychee/releases/download/lychee-v0.23.0/lychee-aarch64-unknown-linux-gnu.tar.gz"
+url_api = "https://api.github.com/repos/lycheeverse/lychee/releases/assets/355422488"
+
+[tools.lychee."platforms.linux-x64"]
+checksum = "sha256:1fcb6ccf10d04c22b8c5873c5b9cb7be32ee7423e12169d6f1a79a6f1962ef81"
+url = "https://github.com/lycheeverse/lychee/releases/download/lychee-v0.23.0/lychee-x86_64-unknown-linux-gnu.tar.gz"
+url_api = "https://api.github.com/repos/lycheeverse/lychee/releases/assets/355422074"
+
+[tools.lychee."platforms.macos-arm64"]
+checksum = "sha256:1953bb425486e1b887757201e54e8fdf866c9cada6c270d8f6ed21ffbed4145a"
+url = "https://github.com/lycheeverse/lychee/releases/download/lychee-v0.23.0/lychee-arm64-macos.tar.gz"
+url_api = "https://api.github.com/repos/lycheeverse/lychee/releases/assets/355419865"
+
+[[tools.node]]
+version = "24.0.2"
+backend = "core:node"
+specifiers = ["24"]
+
+[tools.node."platforms.linux-arm64"]
+checksum = "sha256:78e02e66ea58612b6c84e349c9879333a3a83f51d8127f2593550a4d9a5c5c1a"
+url = "https://nodejs.org/dist/v24.0.2/node-v24.0.2-linux-arm64.tar.gz"
+
+[tools.node."platforms.linux-x64"]
+checksum = "sha256:0a44c1982b14ad2c67ae0d8ec26934d99e43a55c11880459f44a76757775c8fa"
+url = "https://nodejs.org/dist/v24.0.2/node-v24.0.2-linux-x64.tar.gz"
+
+[tools.node."platforms.macos-arm64"]
+checksum = "sha256:dbd43bc96d7754eff03c241888c2cbc1e879bcbbf2f0961fb8e00e9cd3a21526"
+url = "https://nodejs.org/dist/v24.0.2/node-v24.0.2-darwin-arm64.tar.gz"
+
+[tools.node."platforms.macos-x64"]
+checksum = "sha256:b408d41f8e322bcc71fd4d595156b34d4ad03ef149fba26386030c4cf7e2c1e9"
+url = "https://nodejs.org/dist/v24.0.2/node-v24.0.2-darwin-x64.tar.gz"
+
+[[tools.uv]]
+version = "0.12.5"
+backend = "aqua:astral-sh/uv"
+specifiers = ["0.12.5"]
+
+[tools.uv."platforms.linux-arm64"]
+checksum = "sha256:9bf43b4d1a07665bf64d4c4e710930b382321a785e0eb10aac07f46471f86a31"
+url = "https://github.com/astral-sh/uv/releases/download/0.12.5/uv-aarch64-unknown-linux-gnu.tar.gz"
+url_api = "https://api.github.com/repos/astral-sh/uv/releases/assets/514850990"
+provenance = "github-attestations"
+
+[tools.uv."platforms.linux-x64"]
+checksum = "sha256:68a509da24b06b4223a1c0175fb5eb5bc79342b76cbeff0cfe51ac3f5b17b6b2"
+url = "https://github.com/astral-sh/uv/releases/download/0.12.5/uv-x86_64-unknown-linux-gnu.tar.gz"
+url_api = "https://api.github.com/repos/astral-sh/uv/releases/assets/514851093"
+provenance = "github-attestations"
+
+[tools.uv."platforms.macos-arm64"]
+checksum = "sha256:5bb0e5fe008a773c3dbcb97ff79cd89e1241464fe9d2f986d52ad8f1b037bd62"
+url = "https://github.com/astral-sh/uv/releases/download/0.12.5/uv-aarch64-apple-darwin.tar.gz"
+url_api = "https://api.github.com/repos/astral-sh/uv/releases/assets/514850968"
+provenance = "github-attestations"
+
+[tools.uv."platforms.macos-x64"]
+checksum = "sha256:b3b2137477cf96c9686ebfb71524614cec780c673fd73e59bce099aef02e70e8"
+url = "https://github.com/astral-sh/uv/releases/download/0.12.5/uv-x86_64-apple-darwin.tar.gz"
+url_api = "https://api.github.com/repos/astral-sh/uv/releases/assets/514851078"
+provenance = "github-attestations"