wbtools 1.3.2__tar.gz → 1.3.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (60) hide show
  1. {wbtools-1.3.2 → wbtools-1.3.3}/PKG-INFO +1 -1
  2. {wbtools-1.3.2 → wbtools-1.3.3}/setup.py +1 -1
  3. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/db/afp.py +1 -1
  4. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools.egg-info/PKG-INFO +1 -1
  5. {wbtools-1.3.2 → wbtools-1.3.3}/LICENSE +0 -0
  6. {wbtools-1.3.2 → wbtools-1.3.3}/README.md +0 -0
  7. {wbtools-1.3.2 → wbtools-1.3.3}/setup.cfg +0 -0
  8. {wbtools-1.3.2 → wbtools-1.3.3}/tests/__init__.py +0 -0
  9. {wbtools-1.3.2 → wbtools-1.3.3}/tests/config_reader.py +0 -0
  10. {wbtools-1.3.2 → wbtools-1.3.3}/tests/db/__init__.py +0 -0
  11. {wbtools-1.3.2 → wbtools-1.3.3}/tests/db/test_afp.py +0 -0
  12. {wbtools-1.3.2 → wbtools-1.3.3}/tests/db/test_antibody.py +0 -0
  13. {wbtools-1.3.2 → wbtools-1.3.3}/tests/db/test_expression.py +0 -0
  14. {wbtools-1.3.2 → wbtools-1.3.3}/tests/db/test_generic.py +0 -0
  15. {wbtools-1.3.2 → wbtools-1.3.3}/tests/lib/__init__.py +0 -0
  16. {wbtools-1.3.2 → wbtools-1.3.3}/tests/lib/entity_extraction/__init__.py +0 -0
  17. {wbtools-1.3.2 → wbtools-1.3.3}/tests/lib/entity_extraction/test_email_addresses.py +0 -0
  18. {wbtools-1.3.2 → wbtools-1.3.3}/tests/lib/entity_extraction/test_generic.py +0 -0
  19. {wbtools-1.3.2 → wbtools-1.3.3}/tests/lib/entity_extraction/test_new_variations.py +0 -0
  20. {wbtools-1.3.2 → wbtools-1.3.3}/tests/lib/test_literature_index.py +0 -0
  21. {wbtools-1.3.2 → wbtools-1.3.3}/tests/lib/test_scraping.py +0 -0
  22. {wbtools-1.3.2 → wbtools-1.3.3}/tests/lib/test_text_preprocessing.py +0 -0
  23. {wbtools-1.3.2 → wbtools-1.3.3}/tests/lib/test_text_similarity.py +0 -0
  24. {wbtools-1.3.2 → wbtools-1.3.3}/tests/literature/__init__.py +0 -0
  25. {wbtools-1.3.2 → wbtools-1.3.3}/tests/literature/test_corpus.py +0 -0
  26. {wbtools-1.3.2 → wbtools-1.3.3}/tests/literature/test_paper.py +0 -0
  27. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/__init__.py +0 -0
  28. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/db/__init__.py +0 -0
  29. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/db/abstract_manager.py +0 -0
  30. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/db/antibody.py +0 -0
  31. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/db/dbmanager.py +0 -0
  32. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/db/expression.py +0 -0
  33. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/db/gene.py +0 -0
  34. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/db/generic.py +0 -0
  35. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/db/paper.py +0 -0
  36. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/db/person.py +0 -0
  37. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/lib/__init__.py +0 -0
  38. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/lib/email/__init__.py +0 -0
  39. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/lib/email/generic.py +0 -0
  40. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/lib/nlp/__init__.py +0 -0
  41. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/lib/nlp/common.py +0 -0
  42. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/lib/nlp/entity_extraction/__init__.py +0 -0
  43. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/lib/nlp/entity_extraction/email_addresses.py +0 -0
  44. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/lib/nlp/entity_extraction/ntt_extractor.py +0 -0
  45. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/lib/nlp/entity_extraction/variations.py +0 -0
  46. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/lib/nlp/literature_index/__init__.py +0 -0
  47. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/lib/nlp/literature_index/abstract_index.py +0 -0
  48. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/lib/nlp/literature_index/textpresso.py +0 -0
  49. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/lib/nlp/text_preprocessing.py +0 -0
  50. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/lib/nlp/text_similarity.py +0 -0
  51. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/lib/scraping.py +0 -0
  52. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/lib/timeout.py +0 -0
  53. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/literature/__init__.py +0 -0
  54. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/literature/corpus.py +0 -0
  55. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/literature/paper.py +0 -0
  56. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools/literature/person.py +0 -0
  57. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools.egg-info/SOURCES.txt +0 -0
  58. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools.egg-info/dependency_links.txt +0 -0
  59. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools.egg-info/requires.txt +0 -0
  60. {wbtools-1.3.2 → wbtools-1.3.3}/wbtools.egg-info/top_level.txt +0 -0
{wbtools-1.3.2 → wbtools-1.3.3}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: wbtools
3
- Version: 1.3.2
3
+ Version: 1.3.3
4
4
  Summary: Interface to WormBase (www.wormbase.org) curation data, including literature management and NLP functions
5
5
  Home-page: https://github.com/WormBase/wbtools
6
6
  Author: Valerio Arnaboldi
{wbtools-1.3.2 → wbtools-1.3.3}/setup.py RENAMED
@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
5
5
 
6
6
  setuptools.setup(
7
7
  name="wbtools",
8
- version="1.3.2",
8
+ version="1.3.3",
9
9
  author="Valerio Arnaboldi",
10
10
  author_email="valearna@caltech.edu",
11
11
  description="Interface to WormBase (www.wormbase.org) curation data, including literature management and NLP "
{wbtools-1.3.2 → wbtools-1.3.3}/wbtools/db/afp.py RENAMED
@@ -534,7 +534,7 @@ class WBAFPDBManager(AbstractWBDBManager):
534
534
  "join afp_version on afp_contributor.joinkey = afp_version.joinkey "
535
535
  "where afp_version.afp_version = '2' "
536
536
  "group by afp_contributor.afp_contributor order by count(DISTINCT afp_contributor.joinkey) "
537
- "desc OFFSET {} LIMIT {}".format(from_offset, count))
537
+ "desc, afp_contributor.afp_contributor desc OFFSET {} LIMIT {}".format(from_offset, count))
538
538
  res = curs.fetchall()
539
539
  if res:
540
540
  return [(person_db_manager.get_email(row[0]), row[1]) for row in res]
{wbtools-1.3.2 → wbtools-1.3.3}/wbtools.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: wbtools
3
- Version: 1.3.2
3
+ Version: 1.3.3
4
4
  Summary: Interface to WormBase (www.wormbase.org) curation data, including literature management and NLP functions
5
5
  Home-page: https://github.com/WormBase/wbtools
6
6
  Author: Valerio Arnaboldi
{wbtools-1.3.2 → wbtools-1.3.3}/LICENSE RENAMED
File without changes
{wbtools-1.3.2 → wbtools-1.3.3}/README.md RENAMED
File without changes
{wbtools-1.3.2 → wbtools-1.3.3}/setup.cfg RENAMED
File without changes
{wbtools-1.3.2 → wbtools-1.3.3}/tests/__init__.py RENAMED
File without changes
{wbtools-1.3.2 → wbtools-1.3.3}/tests/config_reader.py RENAMED
File without changes
{wbtools-1.3.2 → wbtools-1.3.3}/tests/db/__init__.py RENAMED
File without changes
{wbtools-1.3.2 → wbtools-1.3.3}/tests/db/test_afp.py RENAMED
File without changes
{wbtools-1.3.2 → wbtools-1.3.3}/tests/lib/__init__.py RENAMED
File without changes
{wbtools-1.3.2 → wbtools-1.3.3}/wbtools/__init__.py RENAMED
File without changes
{wbtools-1.3.2 → wbtools-1.3.3}/wbtools/db/__init__.py RENAMED
File without changes
{wbtools-1.3.2 → wbtools-1.3.3}/wbtools/db/antibody.py RENAMED
File without changes
{wbtools-1.3.2 → wbtools-1.3.3}/wbtools/db/dbmanager.py RENAMED
File without changes
{wbtools-1.3.2 → wbtools-1.3.3}/wbtools/db/gene.py RENAMED
File without changes
{wbtools-1.3.2 → wbtools-1.3.3}/wbtools/db/generic.py RENAMED
File without changes
{wbtools-1.3.2 → wbtools-1.3.3}/wbtools/db/paper.py RENAMED
File without changes
{wbtools-1.3.2 → wbtools-1.3.3}/wbtools/db/person.py RENAMED
File without changes
{wbtools-1.3.2 → wbtools-1.3.3}/wbtools/lib/__init__.py RENAMED
File without changes
{wbtools-1.3.2 → wbtools-1.3.3}/wbtools/lib/scraping.py RENAMED
File without changes
{wbtools-1.3.2 → wbtools-1.3.3}/wbtools/lib/timeout.py RENAMED
File without changes