wawi 0.0.8__tar.gz → 0.0.11__tar.gz

{wawi-0.0.8/wawi.egg-info → wawi-0.0.11}/PKG-INFO

@@ -1,6 +1,6 @@
-Metadata-Version: 2.2
+Metadata-Version: 2.4
 Name: wawi
-Version: 0.0.8
+Version: 0.0.11
 Summary: WAve and WInd response prediction
 Author-email: "Knut A. Kvåle" <knut.a.kvale@ntnu.no>, Ole Øiseth <ole.oiseth@ntnu.no>, Aksel Fenerci <aksel.fenerci@ntnu.no>, Øivind Wiig Petersen <oyvind.w.petersen@ntnu.no>
 License: MIT License
@@ -43,6 +43,7 @@ Requires-Dist: trame
 Requires-Dist: ipywidgets
 Requires-Dist: pyvistaqt
 Requires-Dist: beefpy
+Dynamic: license-file
 
 ![WAWI logo](https://raw.githubusercontent.com/knutankv/wawi/main/wawi-logo-animated.svg)
 =======================
@@ -133,6 +134,13 @@ Examples
 =======================
 Examples are provided as Jupyter Notebooks in the [examples folder](https://github.com/knutankv/wawi/tree/main/examples).
 
+The examples are structured in the following folders based on their topic:
+
+* **0 Model generation and setup** - *Describing how a model is defined, either using input files together with the function `wawi.io.import_folder` or using the classes available in the `wawi.model` module directly (in the latter case, the open source Python library BEEF is used to create the required parameters directly in the notebook).*
+* **1 Modal analysis** - *Describing how to set up iterative (and incremental) modal analyses to represent the contributions from aerodynamics and hydrodynamices. Also, an example showing how to set up a multi-modal flutter analysis is given.*
+* **2 Response prediction** - *Describing how to conduct response analyses using WAWI. This includes assigning wind states, sea states, and the necessary commands to run a frequency domain analysis. Furthermore, more advanced topics such as wave-current interaction, inhomogeneous waves and stochastic linearization to represent quadratic drag damping are given in separate examples. Three models are considered: (i) a simple curved floating bridge, (ii) a single beam, (iii) a suspension bridge.*
+* **3 Software interfacing** - *Describing how to export necessary data from other software (limited to Abaqus for now) to construct a WAWI model.*
+
 References
 =======================
 

{wawi-0.0.8 → wawi-0.0.11}/README.md

@@ -87,6 +87,13 @@ Examples
 =======================
 Examples are provided as Jupyter Notebooks in the [examples folder](https://github.com/knutankv/wawi/tree/main/examples).
 
+The examples are structured in the following folders based on their topic:
+
+* **0 Model generation and setup** - *Describing how a model is defined, either using input files together with the function `wawi.io.import_folder` or using the classes available in the `wawi.model` module directly (in the latter case, the open source Python library BEEF is used to create the required parameters directly in the notebook).*
+* **1 Modal analysis** - *Describing how to set up iterative (and incremental) modal analyses to represent the contributions from aerodynamics and hydrodynamices. Also, an example showing how to set up a multi-modal flutter analysis is given.*
+* **2 Response prediction** - *Describing how to conduct response analyses using WAWI. This includes assigning wind states, sea states, and the necessary commands to run a frequency domain analysis. Furthermore, more advanced topics such as wave-current interaction, inhomogeneous waves and stochastic linearization to represent quadratic drag damping are given in separate examples. Three models are considered: (i) a simple curved floating bridge, (ii) a single beam, (iii) a suspension bridge.*
+* **3 Software interfacing** - *Describing how to export necessary data from other software (limited to Abaqus for now) to construct a WAWI model.*
+
 References
 =======================
 

wawi-0.0.11/examples/3 Software interfacing/Abaqus model export/bergsoysund-export.py

@@ -0,0 +1,72 @@
+from sys import path
+from collections import OrderedDict
+
+path.append('C:/Users/knutankv/git-repos/wawi/')   # this is an easy quick fix to enable importing wawi package in Abaqus environment
+savefolder = 'C:/Temp/'
+
+# NOTE: Only linear beam elements are supported in relevant sets!!
+
+import wawi.ext.abq
+import json
+import numpy as np
+
+#%% Get (O) database object
+db = wawi.ext.abq.get_db('odb')
+
+#%% Definitions
+frequency_step = 'Step-1'
+part = db.rootAssembly.instances['TRUSSPART']
+step_obj = db.steps[frequency_step]
+
+if 'ALL' not in part.elementSets:   #CREATE SET OF ALL ELEMENTS IN PART
+    part.ElementSet('ALL', part.elements)
+
+#%% Grab regions
+region_full = part.elementSets['ALL']
+region_hydro = db.rootAssembly.nodeSets['PALL']
+
+#%% Get modal parameters
+fn, m = wawi.ext.abq.get_modal_parameters(frequency_step)
+
+#%% Get wind elements and mode shapes
+node_matrix, element_matrix = wawi.ext.abq.get_element_matrices(region_full, obj=part)
+node_labels = node_matrix[:,0]
+nodes = wawi.ext.abq.create_list_of_nodes(part, node_labels)
+
+# Export element definitions as json
+el_data = dict(node_matrix=node_matrix.tolist(), element_matrix=element_matrix.tolist())
+
+with open('element.json', 'w') as f:
+    json.dump(el_data, f)
+
+phi_full_disp = wawi.ext.abq.get_nodal_phi(step_obj, nodes, flatten_components=True, field_outputs=['UT', 'UR'])
+
+#%% Get pontoon data
+node_matrix_pontoons = wawi.ext.abq.get_element_matrices(region_hydro, obj=part)
+node_labels_pontoons = node_matrix_pontoons[:,0]
+nodes_pontoons = wawi.ext.abq.create_list_of_nodes(part, node_labels_pontoons)
+phi_h = wawi.ext.abq.get_nodal_phi(step_obj, nodes_pontoons, flatten_components=True, field_outputs=['UT', 'UR'])
+
+# Export pontoon.json
+pontoon_types = ['ptype_1']*7   
+rotations = -np.array([13.944407004001892, 9.2962713360012632, 4.6481356680006325, 0.0,
+                     -4.6481356680006334, -9.2962713360012632, -13.944407004001883])
+
+pontoon_data = OrderedDict()
+
+for ix, node in enumerate(node_labels_pontoons):
+    key = 'P'+str (ix+1)
+    pontoon_data[key] = dict(coordinates=node_matrix_pontoons[ix, 1:].tolist(),
+                            node=node,
+                            rotation=rotations[ix],
+                            pontoon_type=pontoon_types[ix])
+
+with open('pontoon.json', 'w') as f:
+    json.dump(pontoon_data, f)
+
+## ------------------- EXPORT MODES ----------------
+modal_data = dict(omega_n=(fn*2*np.pi).tolist(), m=m.tolist(), phi=dict(full=phi_full_disp.tolist(),
+                                     hydro=phi_h.tolist()))
+
+with open('modal.json', 'w') as f:
+    json.dump(modal_data, f)

wawi-0.0.11/examples/3 Software interfacing/Abaqus model export/test.py

@@ -0,0 +1,67 @@
+from sys import path
+from collections import OrderedDict
+
+path.append('C:/Users/knutankv/git-repos/wawi/')   # this is an easy quick fix to enable importing wawi package in Abaqus environment
+savefolder = 'C:/Temp/'
+
+import wawi.ext.abq
+import json
+import numpy as np
+
+#%% Get (O) database object
+db = wawi.ext.abq.get_db('odb')
+
+#%% Definitions
+frequency_step = 'Step-6'
+part = db.rootAssembly.instances['BRIDGE-1']
+step_obj = db.steps[frequency_step]
+
+if 'ALL' not in part.elementSets:   #CREATE SET OF ALL ELEMENTS IN PART
+    part.ElementSet('ALL', part.elements)
+
+#%% Grab regions
+region_full = part.elementSets['ALL']
+region_hydro = part.nodeSets['SPRING']
+
+#%% Get modal parameters
+fn, m = wawi.ext.abq.get_modal_parameters(frequency_step)
+
+#%% Get wind elements and mode shapes
+node_matrix, element_matrix = wawi.ext.abq.get_element_matrices(region_full, obj=part)
+node_labels = node_matrix[:,0]
+
+# Export element definitions as json
+el_data = dict(node_matrix=node_matrix.tolist(), element_matrix=element_matrix.tolist())
+
+with open('element.json', 'w') as f:
+    json.dump(el_data, f)
+
+phi_full_disp = wawi.ext.abq.get_nodal_phi(step_obj, node_labels, flatten_components=True)
+
+#%% Get pontoon data
+node_matrix_pontoons = wawi.ext.abq.get_element_matrices(region_hydro, obj=part, sort_nodes_fun=None)
+node_labels = node_matrix_pontoons[:,0]
+phi_h = wawi.ext.abq.get_nodal_phi(step_obj, node_labels, flatten_components=True)
+
+# Export pontoon.json
+pontoon_types = ['ptype_1']*48
+rotations = np.zeros(48)
+
+pontoon_data = OrderedDict()
+
+for ix, node in enumerate(node_labels):
+    key = 'P'+str (ix+1)
+    pontoon_data[key] = dict(coordinates=node_matrix_pontoons[ix, 1:].tolist(),
+                            node=node,
+                            rotation=rotations[ix],
+                            pontoon_type=pontoon_types[ix])
+
+with open('pontoon.json', 'w') as f:
+    json.dump(pontoon_data, f)
+
+## ------------------- EXPORT MODES ----------------
+modal_data = dict(omega_n=(fn*2*np.pi).tolist(), m=m.tolist(), phi=dict(full=phi_full_disp.tolist(),
+                                     hydro=phi_h.tolist()))
+
+with open('modal.json', 'w') as f:
+    json.dump(modal_data, f)

{wawi-0.0.8 → wawi-0.0.11}/pyproject.toml

@@ -27,12 +27,12 @@ dependencies = ["plotly", "pandas", "numpy", "pyvista[jupyter]>=0.38.1",
                       "beefpy"]
 
 
-[tool.setuptools]
-packages = ["wawi"]
-
 [tool.setuptools.dynamic]
 version = {attr = "wawi.__version__"}
 
+[tool.setuptools.packages]
+find = {}
+
 [project.urls]
 repository = "https://github.com/knutankv/wawi"
 documentation = "https://knutankv.github.io/wawi/"

wawi-0.0.11/wawi/__init__.py

@@ -0,0 +1,12 @@
+'''
+.. include:: ./../README.md
+'''
+__pdoc__ = {'wawi.ext.abq': False}
+
+__version__ = "0.0.11"
+
+# Other packages
+import numpy as np
+import shutil
+import csv
+from copy import deepcopy

wawi-0.0.11/wawi/ext/abq.py

@@ -0,0 +1,259 @@
+import numpy as np
+import numpy as np
+import pdb
+
+from abaqus import *
+from abaqus import session
+from abaqusConstants import *
+import __main__
+import section
+import regionToolset
+import displayGroupMdbToolset as dgm
+import step
+import part
+import material
+import assembly
+import interaction
+import load
+import mesh
+import optimization
+import job
+import sketch
+import visualization
+import xyPlot
+import displayGroupOdbToolset as dgo
+import connectorBehavior
+import symbolicConstants
+import odbAccess
+import shutil
+
+import regionToolset
+
+import csv
+from copy import deepcopy
+
+
+def get_db(db_type):
+    """
+    Return the current database (either a model or an odb object).
+
+    If a model db is wanted and no model is active, the model in the mdb is selected regardless,
+    as long as there is only one model open in the mdb. If no database fits the requirements, None is returned.
+
+    Args:
+        db_type: 'odb' or 'model'
+    Returns:
+        db: database
+
+    NTNU / Knut Andreas Kvaale, 2018
+    """
+    if db_type is 'model' or db_type is 'mdb':
+        if not session_is_odb():
+            db = mdb.models[session.viewports['Viewport: 1'].displayedObject.modelName]
+        elif len(mdb.models.keys()) is 1:
+            db = mdb.models[mdb.models.keys()[0]]
+        elif len(mdb.models.keys()) > 1:
+            raise AttributeError('No model is not active, and more than one model is available in model database. Impossible to select correct.')
+        else:
+            db = None
+    else:
+        if session_is_odb():
+            db = session.viewports[session.currentViewportName].displayedObject
+        else:
+            db = None
+
+    return db
+
+def session_is_odb():
+    """
+    Check if current session is ODB.
+
+    Returns:
+        is_odb: boolean indicating if the session is odb or not
+    """    
+    is_odb =(('session' in locals() or 'session' in globals()) and
+        session.viewports['Viewport: 1'].displayedObject is not None and
+        hasattr(session.viewports['Viewport: 1'].displayedObject, 'jobData'))
+
+    return is_odb
+
+def sort_nodes(nodes, sort_nodes_fun=lambda node: node.label):
+    if sort_nodes_fun is not None:
+        sort_val = [sort_nodes_fun(node) for node in nodes]
+        sort_ix = np.argsort(sort_val)
+        nodes_new = [None] * len(nodes)
+        for node,ix in zip(nodes,sort_ix):
+            nodes_new[ix] = node
+
+        return nodes_new
+    else:
+        return nodes
+
+def get_element_matrices(region, obj=None, sort_nodes_fun=lambda node: node.label):
+    
+    if region.nodes is None:    #element region
+        if obj is None:
+            raise ValueError('If region is of element type, `obj` must be given as input. This is either an `instance` object or a `rootAssembly`')
+
+        elements = region.elements
+        element_labels = [el.label for el in elements]
+        element_matrix = np.zeros([len(element_labels), 3])
+
+        node_labels = []
+        for ix,el in enumerate(elements):
+            element_matrix[ix,0] = el.label
+            nodes = list(el.connectivity)
+            if len(nodes)==3:
+                __ = nodes.pop(1)    #remove middle node
+            element_matrix[ix, 1:] = nodes
+
+            for node in nodes:
+                if node not in node_labels:
+                    node_labels.append(node)
+
+        nodes = [obj.getNodeFromLabel(node) for node in node_labels]  
+        nodes = sort_nodes(nodes, sort_nodes_fun=sort_nodes_fun)
+        node_matrix = create_node_matrix(nodes)
+        return node_matrix, element_matrix
+        
+    else: # node region
+        if type(region.nodes) is tuple:
+            nodes = region.nodes[0]
+        else:
+            nodes = region.nodes
+        nodes = sort_nodes(nodes, sort_nodes_fun=sort_nodes_fun)
+        node_matrix = create_node_matrix(nodes)
+
+        return node_matrix
+
+
+def create_list_of_nodes(region, node_labels):
+    return [region.getNodeFromLabel(int(label)) for label in node_labels]
+
+def create_list_of_elements(region, element_labels):
+    return [region.getElementFromLabel(int(label)) for label in element_labels]
+
+def create_node_matrix(nodes):
+    labels = np.hstack([node.label for node in nodes])[:,np.newaxis]
+    coordinates = np.vstack([node.coordinates for node in nodes])
+    node_matrix = np.hstack([labels, coordinates])
+
+    return node_matrix
+
+def get_nodal_phi(step_obj, nodes, field_outputs=['U', 'UR'], flatten_components=True, return_base_disp=False):
+
+    if step_obj.domain != MODAL:   #MODAL is a variable in abaqusConstants
+        raise TypeError('Type of input step is not modal!')
+
+    n_nodes = len(nodes)
+    n_modes = len(step_obj.frames) - 1
+
+    phi = dict()
+    basedisp = dict()
+    n_dofs = dict()
+
+    for iout, field_output in enumerate(field_outputs):
+        foobj0 = step_obj.frames[0].fieldOutputs[field_output]
+        
+        n_dofs[field_output] = len(foobj0.values[0].data)
+        phio = np.zeros([n_dofs[field_output]*n_nodes, n_modes])
+
+        # Get correct data indices to get correct order (as given in node_labels)
+        basedisp[field_output] = np.array([foobj0.getSubset(region=node).values[0].data for node in nodes]).flatten()
+
+        for mode in range(0, n_modes):
+            foobj = step_obj.frames[mode+1].fieldOutputs[field_output]
+            phio[:, mode] = np.array([foobj.getSubset(region=node).values[0].data for node in nodes]).flatten()
+
+        phi[field_output] = phio*1
+    
+    if flatten_components:
+        phi_merged = [None]*n_modes
+        
+        for mode in range(n_modes):
+            phi_merged[mode] = np.hstack([np.array(phi[key][:, mode]).reshape([-1,n_dofs[key]]) for key in field_outputs]).flatten()
+        
+        basedisp = np.hstack([np.array(basedisp[key]).reshape([-1,n_dofs[key]]) for key in field_outputs]).flatten()
+        phi = np.vstack(phi_merged).T
+
+    if return_base_disp:
+        return phi, basedisp
+    else:
+        return phi
+
+
+def get_element_phi(step_obj, elements, field_outputs=['SF', 'SM'], flatten_components=True, return_integration_points=False):
+    if step_obj.domain != MODAL:   #MODAL is a variable in abaqusConstants
+        raise TypeError('Type of input step is not modal!')
+
+    n_modes = len(step_obj.frames) - 1
+    n_dofs = dict()
+    phi = dict()
+    integration_points = dict()
+
+    for iout, field_output in enumerate(field_outputs):
+        foobj0 = step_obj.frames[0].fieldOutputs[field_output]
+        n_dofs[field_output] = len(foobj0.values[0].data)
+
+        # Get correct data indices to get correct order (as given in node_labels)
+        all_integration_points = [value.integrationPoint for value in foobj0.values]
+
+        n_int = len(elements) # number of integration points (same element label might appear multiple times if multiple integration points in element)
+        phio = np.zeros([n_dofs[field_output]*n_int, n_modes])        
+
+        data_indices = [None]*n_int
+        
+        for mode in range(0, n_modes):
+            foobj = step_obj.frames[mode+1].fieldOutputs[field_output]
+            phio[:, mode] = np.array([foobj.getSubset(region=el)[0].data for el in elements]).flatten()
+
+        integration_points[field_output] = [all_integration_points[ix] for ix in data_indices]
+        phi[field_output] = phio*1
+    
+    if flatten_components:
+        phi_merged = [None]*n_modes
+        
+        for mode in range(n_modes):
+            phi_merged[mode] = np.hstack([np.array(phi[key][:, mode]).reshape([-1,n_dofs[key]]) for key in field_outputs]).flatten()
+            
+        integration_points = np.hstack([np.array(integration_points[key]).reshape([-1,n_dofs[key]]) for key in field_outputs]).flatten()
+        phi = np.vstack(phi_merged).T
+
+
+    if return_integration_points:
+        return phi, integration_points
+    else:
+        return phi
+
+    return phi, integration_points
+
+
+def get_modal_parameters(frequency_step):
+    '''
+    Output the modal parameters from frequency step of current output database.
+
+    Parameters
+    -------------
+    frequency_step : str
+        name of step containing the modal results (frequency step)
+
+    Returns
+    --------------
+    f : float
+        numpy array with undamped natural frequencies in Hz of all modes computed
+    m : float
+        numpy array with modal mass for all modes computed
+    '''
+
+    odb = get_db('odb')
+    history_region_key = odb.steps[frequency_step].historyRegions.keys()[0]
+
+    ftemp = odb.steps[frequency_step].historyRegions[history_region_key].historyOutputs['EIGFREQ'].data
+    f = np.array([x[1] for x in ftemp])
+
+    if 'GM' in odb.steps[frequency_step].historyRegions[history_region_key].historyOutputs.keys():
+        mtemp = odb.steps[frequency_step].historyRegions[history_region_key].historyOutputs['GM'].data
+        m = np.array([x[1] for x in mtemp])
+    else:
+        m = np.ones(np.shape(f))    #if no GM field is available, mass normalization is assumed used on eigenvalues
+    return f, m

{wawi-0.0.8 → wawi-0.0.11}/wawi/io.py

@@ -336,7 +336,7 @@ def load_model(model_path, save_if_nonexistent=False, sort_nodes_by_x=True):
 
 def import_wadam_hydro_transfer(wadam_file):
     '''
-    Import WADAM output file.
+    Import WADAM LIS output file.
 
     Parameters
     -----------

wawi-0.0.11/wawi/model/__init__.py

@@ -0,0 +1,11 @@
+from ._aero import *
+from ._dry import *
+from ._hydro import *
+from ._model import *
+from ._screening import *
+
+'''
+MODEL GENERATION/SIMULATION MODULE
+'''
+
+__all__ = ['_aero', '_dry', '_hydro', '_model', '_screening']