wavelet-matrix 2.2.2__tar.gz → 2.2.5__tar.gz

{wavelet_matrix-2.2.2 → wavelet_matrix-2.2.5}/.github/workflows/CI.yml

@@ -42,8 +42,8 @@ jobs:
           - runner: ubuntu-latest
             target: ppc64le
     steps:
-      - uses: actions/checkout@v6
-      - uses: actions/setup-python@v6
+      - uses: actions/checkout@v7
+      - uses: actions/setup-python@v7
         with:
           python-version: 3.x
       - name: Build wheels
@@ -55,7 +55,7 @@ jobs:
           manylinux: auto
       - name: Upload wheels
         if: ${{ startsWith(github.ref, 'refs/tags/') || github.event_name == 'workflow_dispatch' }}
-        uses: actions/upload-artifact@v6
+        uses: actions/upload-artifact@v7
         with:
           name: wheels-linux-${{ matrix.platform.target }}
           path: dist
@@ -75,8 +75,8 @@ jobs:
           - runner: ubuntu-latest
             target: armv7
     steps:
-      - uses: actions/checkout@v6
-      - uses: actions/setup-python@v6
+      - uses: actions/checkout@v7
+      - uses: actions/setup-python@v7
         with:
           python-version: 3.x
       - name: Build wheels
@@ -88,7 +88,7 @@ jobs:
           manylinux: musllinux_1_2
       - name: Upload wheels
         if: ${{ startsWith(github.ref, 'refs/tags/') || github.event_name == 'workflow_dispatch' }}
-        uses: actions/upload-artifact@v6
+        uses: actions/upload-artifact@v7
         with:
           name: wheels-musllinux-${{ matrix.platform.target }}
           path: dist
@@ -104,8 +104,8 @@ jobs:
           - runner: windows-latest
             target: x86
     steps:
-      - uses: actions/checkout@v6
-      - uses: actions/setup-python@v6
+      - uses: actions/checkout@v7
+      - uses: actions/setup-python@v7
         with:
           python-version: 3.x
           architecture: ${{ matrix.platform.target }}
@@ -117,7 +117,7 @@ jobs:
           sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
       - name: Upload wheels
         if: ${{ startsWith(github.ref, 'refs/tags/') || github.event_name == 'workflow_dispatch' }}
-        uses: actions/upload-artifact@v6
+        uses: actions/upload-artifact@v7
         with:
           name: wheels-windows-${{ matrix.platform.target }}
           path: dist
@@ -133,8 +133,8 @@ jobs:
           - runner: macos-latest
             target: aarch64
     steps:
-      - uses: actions/checkout@v6
-      - uses: actions/setup-python@v6
+      - uses: actions/checkout@v7
+      - uses: actions/setup-python@v7
         with:
           python-version: 3.x
       - name: Build wheels
@@ -145,7 +145,7 @@ jobs:
           sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
       - name: Upload wheels
         if: ${{ startsWith(github.ref, 'refs/tags/') || github.event_name == 'workflow_dispatch' }}
-        uses: actions/upload-artifact@v6
+        uses: actions/upload-artifact@v7
         with:
           name: wheels-macos-${{ matrix.platform.target }}
           path: dist
@@ -154,8 +154,8 @@ jobs:
     needs: [cargo-test, python-test]
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v6
-      - uses: actions/setup-python@v6
+      - uses: actions/checkout@v7
+      - uses: actions/setup-python@v7
         with:
           python-version: 3.x
       - name: Build sdist
@@ -165,7 +165,7 @@ jobs:
           args: --out dist
       - name: Upload sdist
         if: ${{ startsWith(github.ref, 'refs/tags/') || github.event_name == 'workflow_dispatch' }}
-        uses: actions/upload-artifact@v6
+        uses: actions/upload-artifact@v7
         with:
           name: wheels-sdist
           path: dist
@@ -173,7 +173,7 @@ jobs:
   cargo-test:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v7
       - uses: dtolnay/rust-toolchain@stable
         with:
           components: clippy
@@ -191,7 +191,7 @@ jobs:
       - name: Clippy check
         run: cargo clippy --all-targets --all-features -- -D warnings
       - name: Upload coverage reports to Codecov
-        uses: codecov/codecov-action@v5
+        uses: codecov/codecov-action@v7
         with:
           fail_ci_if_error: true
           token: ${{ secrets.CODECOV_TOKEN }}
@@ -199,8 +199,8 @@ jobs:
   python-test:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v6
-      - uses: actions/setup-python@v6
+      - uses: actions/checkout@v7
+      - uses: actions/setup-python@v7
         with:
           python-version: 3.x
       - name: Install packages
@@ -233,11 +233,11 @@ jobs:
           - "3.12"
           - "3.13"
           - "3.14"
-          - "3.15.0-beta.3"
+          - "3.15-dev"
           - "pypy3.11"
     steps:
-      - uses: actions/checkout@v6
-      - uses: actions/setup-python@v6
+      - uses: actions/checkout@v7
+      - uses: actions/setup-python@v7
         with:
           python-version: ${{ matrix.python }}
       - name: Install packages
@@ -278,10 +278,6 @@ jobs:
           pattern: wheels-*
           path: dist
           merge-multiple: true
-      - name: Generate artifact attestation
-        uses: actions/attest-build-provenance@v3
-        with:
-          subject-path: 'dist/*'
       - name: Publish to PyPI
         if: ${{ startsWith(github.ref, 'refs/tags/') }}
         uses: pypa/gh-action-pypi-publish@release/v1

{wavelet_matrix-2.2.2 → wavelet_matrix-2.2.5}/Cargo.lock

@@ -10,15 +10,15 @@ checksum = "f2032f911046de80f0a198e0901378627c33f59ea0ac00e363d481118bd70a53"
 
 [[package]]
 name = "bitflags"
-version = "2.13.0"
+version = "2.13.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b4388bee8683e3d04af747c73422af53102d2bd24d9eadb6cbc100baef4b43f8"
+checksum = "b588b76d00fde79687d7646a9b5bdf3cc0f655e0bbd080335a95d7e96f3587da"
 
 [[package]]
 name = "bytemuck"
-version = "1.25.0"
+version = "1.25.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c8efb64bd706a16a1bdde310ae86b351e4d21550d98d056f22f8a7f7a2183fec"
+checksum = "95832e849adfb21180ccb6826a99da14e5d266ae5c2e668e1602cf234f153797"
 
 [[package]]
 name = "cfg-if"
@@ -53,9 +53,9 @@ checksum = "61803da095bee82a81bb1a452ecc25d3b2f1416d1897eb86430c6159ef717c17"
 
 [[package]]
 name = "either"
-version = "1.16.0"
+version = "1.17.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "91622ff5e7162018101f2fea40d6ebf4a78bbe5a49736a2020649edf9693679e"
+checksum = "9e5e8f6c15a24b9a3ee5efec809ccd006d3b30e8b3bb63c39af737c7f87daa1d"
 
 [[package]]
 name = "errno"
@@ -69,9 +69,9 @@ dependencies = [
 
 [[package]]
 name = "fastrand"
-version = "2.4.1"
+version = "2.5.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9f1f227452a390804cdb637b74a86990f2a7d7ba4b7d5693aac9b4dd6defd8d6"
+checksum = "da7c62ceae207dd37ea5b845da6a0696c799f85e97da1ab5b7910be3c1c80223"
 
 [[package]]
 name = "getrandom"
@@ -90,20 +90,11 @@ version = "0.5.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "2304e00983f87ffb38b55b444b5e3b60a884b5d30c0fca7d82fe33449bbe55ea"
 
-[[package]]
-name = "itertools"
-version = "0.15.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8b4baf93f58d4425749ca49a51c50ebab072c5df6994d08fed93541c331481dc"
-dependencies = [
- "either",
-]
-
 [[package]]
 name = "libc"
-version = "0.2.186"
+version = "0.2.189"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "68ab91017fe16c622486840e4c83c9a37afeff978bd239b5293d61ece587de66"
+checksum = "3eaf3ede3fee6db1a4c2ee091bf8a8b4dccdc6d17f656fb07896ee72867612f2"
 
 [[package]]
 name = "linux-raw-sys"
@@ -156,15 +147,15 @@ checksum = "9f7c3e4beb33f85d45ae3e3a1792185706c8e16d043238c593331cc7cd313b50"
 
 [[package]]
 name = "portable-atomic"
-version = "1.13.1"
+version = "1.14.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c33a9471896f1c69cecef8d20cbe2f7accd12527ce60845ff44c153bb2a21b49"
+checksum = "3d20d5497ef88037a52ff98267d066e7f11fcc5e99bbfbd58a42336193aacec3"
 
 [[package]]
 name = "proc-macro2"
-version = "1.0.106"
+version = "1.0.107"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8fd00f0bb2e90d81d1044c2b32617f68fcb9fa3bb7640c23e9c748e53fb30934"
+checksum = "985e7ec9bb745e6ce6535b544d84d6cd6f7ad8bd711c398938ae983b91a766d9"
 dependencies = [
  "unicode-ident",
 ]
@@ -230,9 +221,9 @@ dependencies = [
 
 [[package]]
 name = "quote"
-version = "1.0.46"
+version = "1.0.47"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "dfbc457d0c7a0759a614551b11a6409e5951f6c7537be1f1b7682b9ae9230368"
+checksum = "1fbf4db142a473a8d80c26bbf18454ed458bf8d26c8219c331daecfdbd079001"
 dependencies = [
  "proc-macro2",
 ]
@@ -278,9 +269,9 @@ dependencies = [
 
 [[package]]
 name = "syn"
-version = "2.0.118"
+version = "2.0.119"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1b9ae57f904213ebb649ce6895b8a66c66f0203b9319718f69a5612a065b1422"
+checksum = "872831b642d1a07999a962a351ed35b955ea2cfc8f3862091e2a240a84f17297"
 dependencies = [
  "proc-macro2",
  "quote",
@@ -314,10 +305,9 @@ checksum = "e6e4313cd5fcd3dad5cafa179702e2b244f760991f45397d14d4ebf38247da75"
 
 [[package]]
 name = "wavelet-matrix"
-version = "2.2.2"
+version = "2.2.5"
 dependencies = [
  "bytemuck",
- "itertools",
  "memmap2",
  "num-bigint",
  "num-integer",

{wavelet_matrix-2.2.2 → wavelet_matrix-2.2.5}/Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "wavelet-matrix"
-version = "2.2.2"
+version = "2.2.5"
 edition = "2024"
 readme = "README.md"
 
@@ -10,10 +10,9 @@ name = "wavelet_matrix"
 crate-type = ["cdylib"]
 
 [dependencies]
-bytemuck = "1.25.0"
-itertools = "0.15.0"
-memmap2 = "0.9.10"
-num-bigint = "0.4.6"
+bytemuck = "1.25.2"
+memmap2 = "0.9.11"
+num-bigint = "0.4.8"
 num-integer = "0.1.46"
 num-traits = "0.2.19"
 pyo3 = { version = "0.29.0", features = ["num-bigint"] }

{wavelet_matrix-2.2.2 → wavelet_matrix-2.2.5}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: wavelet-matrix
-Version: 2.2.2
+Version: 2.2.5
 Classifier: Intended Audience :: Developers
 Classifier: Intended Audience :: Science/Research
 Classifier: Intended Audience :: Information Technology

{wavelet_matrix-2.2.2 → wavelet_matrix-2.2.5}/benchmarks/bench_disk_wavelet_matrix.py

@@ -22,39 +22,39 @@ def random_disk_wavelet_matrix(random_data: list[int]) -> WaveletMatrix:
 @pytest.mark.parametrize("size", [500, 10000, 200000])
 @pytest.mark.parametrize("max_bit", [8, 32, 128])
 class BenchDiskWaveletMatrix:
-    def bench_construction(self, benchmark, random_data):
+    def bench_disk_construction(self, benchmark, random_data):
         """Benchmark DiskWaveletMatrix construction"""
         benchmark(WaveletMatrix, random_data, on_disk=True)
 
-    def bench_values(self, benchmark, random_disk_wavelet_matrix):
+    def bench_disk_values(self, benchmark, random_disk_wavelet_matrix):
         """Benchmark DiskWaveletMatrix values retrieval"""
         benchmark(random_disk_wavelet_matrix.values)
 
-    def bench_access(self, benchmark, random_disk_wavelet_matrix, size):
+    def bench_disk_access(self, benchmark, random_disk_wavelet_matrix, size):
         """Benchmark DiskWaveletMatrix access"""
         index = random.randint(0, size - 1)
         benchmark(random_disk_wavelet_matrix.access, index)
 
-    def bench_rank(self, benchmark, random_disk_wavelet_matrix, size):
+    def bench_disk_rank(self, benchmark, random_disk_wavelet_matrix, size):
         """Benchmark DiskWaveletMatrix rank"""
         value = random_disk_wavelet_matrix[random.randint(0, size - 1)]
         end = random.randint(0, size)
         benchmark(random_disk_wavelet_matrix.rank, value, end)
 
-    def bench_select(self, benchmark, random_disk_wavelet_matrix, size):
+    def bench_disk_select(self, benchmark, random_disk_wavelet_matrix, size):
         """Benchmark DiskWaveletMatrix select"""
         value = random_disk_wavelet_matrix[random.randint(0, size - 1)]
         kth = random_disk_wavelet_matrix.rank(value, size)
         benchmark(random_disk_wavelet_matrix.select, value, kth)
 
-    def bench_quantile(self, benchmark, random_disk_wavelet_matrix, size):
+    def bench_disk_quantile(self, benchmark, random_disk_wavelet_matrix, size):
         """Benchmark DiskWaveletMatrix quantile"""
         start = size // 4
         end = size * 3 // 4
         kth = random.randint(1, end - start)
         benchmark(random_disk_wavelet_matrix.quantile, start, end, kth)
 
-    def bench_range_freq(self, benchmark, random_disk_wavelet_matrix, size, max_bit):
+    def bench_disk_range_freq(self, benchmark, random_disk_wavelet_matrix, size, max_bit):
         """Benchmark DiskWaveletMatrix range_freq"""
         start = size // 4
         end = size * 3 // 4
@@ -62,28 +62,28 @@ class BenchDiskWaveletMatrix:
         upper = (1 << max_bit) * 3 // 4
         benchmark(random_disk_wavelet_matrix.range_freq, start, end, lower, upper)
 
-    def bench_range_maxk(self, benchmark, random_disk_wavelet_matrix, size):
+    def bench_disk_range_maxk(self, benchmark, random_disk_wavelet_matrix, size):
         """Benchmark DiskWaveletMatrix range_maxk"""
         start = size // 4
         end = size * 3 // 4
         k = 10
         benchmark(random_disk_wavelet_matrix.range_maxk, start, end, k)
 
-    def bench_range_mink(self, benchmark, random_disk_wavelet_matrix, size):
+    def bench_disk_range_mink(self, benchmark, random_disk_wavelet_matrix, size):
         """Benchmark DiskWaveletMatrix range_mink"""
         start = size // 4
         end = size * 3 // 4
         k = 10
         benchmark(random_disk_wavelet_matrix.range_mink, start, end, k)
 
-    def bench_prev_value(self, benchmark, random_disk_wavelet_matrix, size, max_bit):
+    def bench_disk_prev_value(self, benchmark, random_disk_wavelet_matrix, size, max_bit):
         """Benchmark DiskWaveletMatrix prev_value"""
         start = size // 4
         end = size * 3 // 4
         upper = 1 << (max_bit - 1)
         benchmark(random_disk_wavelet_matrix.prev_value, start, end, upper)
 
-    def bench_next_value(self, benchmark, random_disk_wavelet_matrix, size, max_bit):
+    def bench_disk_next_value(self, benchmark, random_disk_wavelet_matrix, size, max_bit):
         """Benchmark DiskWaveletMatrix next_value"""
         start = size // 4
         end = size * 3 // 4

{wavelet_matrix-2.2.2 → wavelet_matrix-2.2.5}/pyproject.toml

@@ -75,7 +75,7 @@ addopts = [
     "--strict-markers",
     "--tb=short",
     "--benchmark-columns=mean,stddev,min,max",
-    "--benchmark-group-by=fullfunc",
+    "--benchmark-group-by=func",
 ]
 
 [tool.ruff]