water-column-sonar-processing 25.3.0__tar.gz → 25.3.2__tar.gz

{water_column_sonar_processing-25.3.0 → water_column_sonar_processing-25.3.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: water_column_sonar_processing
-Version: 25.3.0
+Version: 25.3.2
 Summary: Processing tool for water column sonar data.
 Author-email: Rudy Klucik <rudy.klucik@noaa.gov>
 Maintainer-email: Rudy Klucik <rudy.klucik@noaa.gov>
@@ -49,7 +49,7 @@ Requires-Dist: matplotlib==3.10.1; extra == "dev"
 Requires-Dist: pooch==1.8.2; extra == "dev"
 Requires-Dist: pre-commit; extra == "dev"
 Requires-Dist: pyinstaller; extra == "dev"
-Requires-Dist: pytest~=8.3.3; extra == "dev"
+Requires-Dist: pytest~=8.3.4; extra == "dev"
 Requires-Dist: ruff; extra == "dev"
 Requires-Dist: tqdm; extra == "dev"
 Requires-Dist: twine; extra == "dev"

{water_column_sonar_processing-25.3.0 → water_column_sonar_processing-25.3.2}/pyproject.toml

@@ -7,7 +7,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "water_column_sonar_processing"
-version = "25.3.0"
+version = "25.3.2"
 authors = [
   { name="Rudy Klucik", email="rudy.klucik@noaa.gov" },
 ]
@@ -64,7 +64,7 @@ dev = [
     "pooch==1.8.2",
     "pre-commit",
     "pyinstaller",
-    "pytest~=8.3.3",
+    "pytest~=8.3.4",
     "ruff",
     "tqdm",
     "twine",

{water_column_sonar_processing-25.3.0 → water_column_sonar_processing-25.3.2}/water_column_sonar_processing/model/zarr_manager.py

@@ -42,7 +42,7 @@ class ZarrManager:
         # Note: returned values do not start at zero.
         # For more info see here: https://echopype.readthedocs.io/en/stable/data-proc-additional.html
         print("Getting depth values.")
-        all_cruise_depth_values = np.linspace(
+        all_cruise_depth_values = np.linspace(  # TODO: PROBLEM HERE
             start=min_echo_range,
             stop=max_echo_range,
             num=int((max_echo_range - min_echo_range) / cruise_min_epsilon) + 1,
@@ -200,6 +200,27 @@ class ZarrManager:
         root.bottom.attrs["long_name"] = Coordinates.BOTTOM_LONG_NAME.value
         root.bottom.attrs["standard_name"] = Coordinates.BOTTOM_STANDARD_NAME.value
 
+        #####################################################################
+        # TODO: verify adding this variable with test
+        # --- Coordinate: Speed --- #
+        root.create_dataset(
+            name=Coordinates.SPEED.value,
+            data=np.repeat(np.nan, width),  # root.longitude[:] = np.nan
+            shape=width,
+            chunks=Constants.SPATIOTEMPORAL_CHUNK_SIZE.value,
+            dtype=np.dtype(Coordinates.SPEED_DTYPE.value),
+            compressor=self.__compressor,
+            fill_value=np.nan,
+            overwrite=self.__overwrite,
+        )
+
+        # SPEED is indexed by TIME
+        root.speed.attrs["_ARRAY_DIMENSIONS"] = [Coordinates.TIME.value]
+
+        root.speed.attrs["units"] = Coordinates.SPEED_UNITS.value
+        root.speed.attrs["long_name"] = Coordinates.SPEED_LONG_NAME.value
+        root.speed.attrs["standard_name"] = Coordinates.SPEED_STANDARD_NAME.value
+
         #####################################################################
         # --- Coordinate: Frequency --- #
         root.create_dataset(

{water_column_sonar_processing-25.3.0 → water_column_sonar_processing-25.3.2}/water_column_sonar_processing/utility/constants.py

@@ -3,7 +3,7 @@ from enum import Enum, Flag, unique
 
 @unique
 class Constants(Flag):
-    TILE_SIZE = 1024
+    TILE_SIZE = 512
 
     # Average https://noaa-wcsd-zarr-pds.s3.us-east-1.amazonaws.com/level_2/Henry_B._Bigelow/HB0902/EK60/HB0902.zarr/time/927
     # chunk size is ~1.3 kB, HB0902 cruise takes ~30 seconds to load all time/lat/lon data
@@ -71,6 +71,12 @@ class Coordinates(Enum):
     BOTTOM_LONG_NAME = "Detected sea floor depth"
     BOTTOM_STANDARD_NAME = "bottom"
 
+    SPEED = "speed"
+    SPEED_DTYPE = "float32"
+    SPEED_UNITS = "Knots"
+    SPEED_LONG_NAME = "Nautical miles per hour"
+    SPEED_STANDARD_NAME = "speed"
+
     SV = "Sv"
     SV_DTYPE = "float32"  # TODO: experiment with dtype of int
     SV_UNITS = "dB"

{water_column_sonar_processing-25.3.0 → water_column_sonar_processing-25.3.2}/water_column_sonar_processing.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: water_column_sonar_processing
-Version: 25.3.0
+Version: 25.3.2
 Summary: Processing tool for water column sonar data.
 Author-email: Rudy Klucik <rudy.klucik@noaa.gov>
 Maintainer-email: Rudy Klucik <rudy.klucik@noaa.gov>
@@ -49,7 +49,7 @@ Requires-Dist: matplotlib==3.10.1; extra == "dev"
 Requires-Dist: pooch==1.8.2; extra == "dev"
 Requires-Dist: pre-commit; extra == "dev"
 Requires-Dist: pyinstaller; extra == "dev"
-Requires-Dist: pytest~=8.3.3; extra == "dev"
+Requires-Dist: pytest~=8.3.4; extra == "dev"
 Requires-Dist: ruff; extra == "dev"
 Requires-Dist: tqdm; extra == "dev"
 Requires-Dist: twine; extra == "dev"

{water_column_sonar_processing-25.3.0 → water_column_sonar_processing-25.3.2}/water_column_sonar_processing.egg-info/requires.txt

@@ -35,7 +35,7 @@ matplotlib==3.10.1
 pooch==1.8.2
 pre-commit
 pyinstaller
-pytest~=8.3.3
+pytest~=8.3.4
 ruff
 tqdm
 twine