water-column-sonar-processing 0.0.1__tar.gz → 0.0.3__tar.gz

{water_column_sonar_processing-0.0.1/src/water_column_sonar_processing.egg-info → water_column_sonar_processing-0.0.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: water-column-sonar-processing
-Version: 0.0.1
+Version: 0.0.3
 Summary: A processing tool for water column sonar data.
 Author-email: Rudy Klucik <rudy.klucik@noaa.gov>
 Project-URL: Homepage, https://github.com/CI-CMG/water-column-sonar-processing
@@ -12,10 +12,10 @@ Requires-Python: >=3.10
 Description-Content-Type: text/markdown
 License-File: LICENSE
 
-# water-column-sonar-processing
+# Water Column Sonar Processing
 Processing tool for converting L0 data to L1 and L2 as well as generating geospatial information
 
-## Setting up the Python Environment
+# Setting up the Python Environment
 > Python 3.10.12
 
 # MacOS Pyenv Installation Instructions
@@ -33,8 +33,7 @@ Processing tool for converting L0 data to L1 and L2 as well as generating geospa
          1. ```eval "$(pyenv virtualenv-init -)"```
   3. Open a new terminal
   4. Install Python version
-     1. ```env PYTHON_CONFIGURE_OPTS="--enable-shared"```
-     2. ```env CONFIGURE_OPTS='--enable-optimizations' arch -arm64 pyenv install 3.10.12```
+     1. ```env CONFIGURE_OPTS='--enable-optimizations' arch -arm64 pyenv install 3.10.12```
   5. Create virtual env (to delete 'pyenv uninstall 3.10.12/water-column-sonar-processing')
      1. ```pyenv virtualenv 3.10.12 water-column-sonar-processing```
   6. Set local version of python (if not done already)
@@ -42,7 +41,7 @@ Processing tool for converting L0 data to L1 and L2 as well as generating geospa
      2. ```pyenv local 3.10.12 water-column-sonar-processing```
      3. ```pyenv activate water-column-sonar-processing```
 
-## Setting up IntelliJ
+# Setting up IntelliJ
 
   1. Install the IntelliJ Python plugin
   2. Set up pyenv
@@ -55,35 +54,40 @@ Processing tool for converting L0 data to L1 and L2 as well as generating geospa
      2. Facets -> + -> Python 
      3. Set interpreter 
 
-## Installing Dependencies
+# Installing Dependencies
 
   1. Add dependencies with versions to requirements.txt
   2. ```pip install --upgrade pip && pip install -r requirements_dev.txt```
 
 
-## Pytest
+# Pytest
 ```commandline
 pytest --disable-warnings
 ```
 
-## Instructions
+# Instructions
 Following this tutorial:
 https://packaging.python.org/en/latest/tutorials/packaging-projects/
 
-## To Publish To TEST
+# To Publish To TEST
 ```commandline
 python -m build
 python -m twine upload --repository testpypi dist/*
 pytho -m pip install --index-url https://test.pypi.org/simple/ hello-pypi-rudy-klucik
 python
 ```
-```python
+```
 from water-column-sonar-processing import ZarrManager
 example.add_one(2)
 ```
 
-## To Publish To PROD
+# To Publish To PROD
 ```commandline
 python -m build
 python -m twine upload --repository pypi dist/*
 ```
+
+
+# Linting
+Ruff
+https://plugins.jetbrains.com/plugin/20574-ruff

{water_column_sonar_processing-0.0.1 → water_column_sonar_processing-0.0.3}/README.md

@@ -1,7 +1,7 @@
-# water-column-sonar-processing
+# Water Column Sonar Processing
 Processing tool for converting L0 data to L1 and L2 as well as generating geospatial information
 
-## Setting up the Python Environment
+# Setting up the Python Environment
 > Python 3.10.12
 
 # MacOS Pyenv Installation Instructions
@@ -19,8 +19,7 @@ Processing tool for converting L0 data to L1 and L2 as well as generating geospa
          1. ```eval "$(pyenv virtualenv-init -)"```
   3. Open a new terminal
   4. Install Python version
-     1. ```env PYTHON_CONFIGURE_OPTS="--enable-shared"```
-     2. ```env CONFIGURE_OPTS='--enable-optimizations' arch -arm64 pyenv install 3.10.12```
+     1. ```env CONFIGURE_OPTS='--enable-optimizations' arch -arm64 pyenv install 3.10.12```
   5. Create virtual env (to delete 'pyenv uninstall 3.10.12/water-column-sonar-processing')
      1. ```pyenv virtualenv 3.10.12 water-column-sonar-processing```
   6. Set local version of python (if not done already)
@@ -28,7 +27,7 @@ Processing tool for converting L0 data to L1 and L2 as well as generating geospa
      2. ```pyenv local 3.10.12 water-column-sonar-processing```
      3. ```pyenv activate water-column-sonar-processing```
 
-## Setting up IntelliJ
+# Setting up IntelliJ
 
   1. Install the IntelliJ Python plugin
   2. Set up pyenv
@@ -41,35 +40,40 @@ Processing tool for converting L0 data to L1 and L2 as well as generating geospa
      2. Facets -> + -> Python 
      3. Set interpreter 
 
-## Installing Dependencies
+# Installing Dependencies
 
   1. Add dependencies with versions to requirements.txt
   2. ```pip install --upgrade pip && pip install -r requirements_dev.txt```
 
 
-## Pytest
+# Pytest
 ```commandline
 pytest --disable-warnings
 ```
 
-## Instructions
+# Instructions
 Following this tutorial:
 https://packaging.python.org/en/latest/tutorials/packaging-projects/
 
-## To Publish To TEST
+# To Publish To TEST
 ```commandline
 python -m build
 python -m twine upload --repository testpypi dist/*
 pytho -m pip install --index-url https://test.pypi.org/simple/ hello-pypi-rudy-klucik
 python
 ```
-```python
+```
 from water-column-sonar-processing import ZarrManager
 example.add_one(2)
 ```
 
-## To Publish To PROD
+# To Publish To PROD
 ```commandline
 python -m build
 python -m twine upload --repository pypi dist/*
-```
+```
+
+
+# Linting
+Ruff
+https://plugins.jetbrains.com/plugin/20574-ruff

{water_column_sonar_processing-0.0.1 → water_column_sonar_processing-0.0.3}/pyproject.toml

@@ -1,10 +1,10 @@
 [build-system]
-requires = ["setuptools>=61.0"]
+requires = ["setuptools", "wheel"]
 build-backend = "setuptools.build_meta"
 
 [project]
 name = "water-column-sonar-processing"
-version = "0.0.1"
+version = "0.0.3"
 authors = [
   { name="Rudy Klucik", email="rudy.klucik@noaa.gov" },
 ]
@@ -19,4 +19,15 @@ classifiers = [
 
 [project.urls]
 Homepage = "https://github.com/CI-CMG/water-column-sonar-processing"
-Issues = "https://github.com/CI-CMG/water-column-sonar-processing/issues"
+Issues = "https://github.com/CI-CMG/water-column-sonar-processing/issues"
+
+#[pytest]
+#pythonpath = "src"
+#testpaths = "tests"
+
+[tool.pytest.ini_options]
+minversion = "6.0"
+addopts = "-ra -q"
+testpaths = [
+    "tests",
+]

water_column_sonar_processing-0.0.3/src/aws_manager/__init__.py

@@ -0,0 +1,4 @@
+# from .dynamodb_manager import DynamoDBManager
+# from .s3_manager import S3Manager
+# from .s3fs_manager import S3FSManager
+# from .sns_manager import SNSManager

{water_column_sonar_processing-0.0.1/src/model/aws → water_column_sonar_processing-0.0.3/src/aws_manager}/dynamodb_manager.py

@@ -23,7 +23,7 @@ class DynamoDBManager:
         self.type_deserializer = TypeDeserializer()
 
     #####################################################################
-    ### defined in raw-to-zarr, not used
+    ### defined in raw-to-zarr_manager, not used
     # def put_item(
     #         self,
     #         table_name,

{water_column_sonar_processing-0.0.1/src/model/aws → water_column_sonar_processing-0.0.3/src/aws_manager}/s3_manager.py

@@ -1,10 +1,10 @@
 import json
 import os
 import boto3
-import pandas as pd
+# import pandas as pd
 from collections.abc import Generator
 
-import geopandas
+# import geopandas
 from botocore.config import Config
 from boto3.s3.transfer import TransferConfig
 from botocore.exceptions import ClientError
@@ -139,12 +139,12 @@ class S3Manager:
         return all_uploads
 
     #####################################################################
-    def upload_zarr_files_to_bucket(  # noaa-wcsd-zarr-pds
+    def upload_zarr_files_to_bucket(  # noaa-wcsd-zarr_manager-pds
             self,
             local_directory,
             remote_directory,
     ):
-        # Right now this is just for uploading a zarr store to s3
+        # Right now this is just for uploading a zarr_manager store to s3
         print('Uploading files to output bucket.')
         store_name = os.path.basename(local_directory)
         all_files = []
@@ -162,8 +162,8 @@ class S3Manager:
         return all_uploads
 
     #####################################################################
-    # used: raw-to-zarr
-    def list_objects(  # noaa-wcsd-pds and noaa-wcsd-zarr-pds
+    # used: raw-to-zarr_manager
+    def list_objects(  # noaa-wcsd-pds and noaa-wcsd-zarr_manager-pds
             self,
             bucket_name,
             prefix
@@ -250,8 +250,8 @@ class S3Manager:
         return raw_files
 
     #####################################################################
-    def get_object(  # TODO: Move this to index.py
-                     # noaa-wcsd-pds or noaa-wcsd-zarr-pds
+    def get_object(  # TODO: Move this to index_manager.py
+                     # noaa-wcsd-pds or noaa-wcsd-zarr_manager-pds
             self,
             bucket_name,
             key_name,
@@ -272,9 +272,9 @@ class S3Manager:
         return response
 
     #####################################################################
-    # used raw-to-zarr
+    # used raw-to-zarr_manager
     def download_file(  # TODO: change to download_object
-                        # noaa-wcsd-pds or noaa-wcsd-zarr-pds
+                        # noaa-wcsd-pds or noaa-wcsd-zarr_manager-pds
             self,
             bucket_name,
             key,
@@ -289,7 +289,7 @@ class S3Manager:
 
     #####################################################################
     # not used
-    # def delete_nodd_object(  # noaa-wcsd-zarr-pds
+    # def delete_nodd_object(  # noaa-wcsd-zarr_manager-pds
     #         self,
     #         bucket_name,
     #         key
@@ -319,7 +319,7 @@ class S3Manager:
 
     #####################################################################
     # not used TODO: remove
-    def put(  # noaa-wcsd-zarr-pds
+    def put(  # noaa-wcsd-zarr_manager-pds
             self,
             bucket_name,
             key,

{water_column_sonar_processing-0.0.1/src/model/aws → water_column_sonar_processing-0.0.3/src/aws_manager}/sns_manager.py

@@ -1,5 +1,5 @@
 import os
-import json
+# import json
 import boto3
 
 

{water_column_sonar_processing-0.0.1/src/model/aws → water_column_sonar_processing-0.0.3/src/aws_manager}/sqs_manager.py

@@ -1,6 +1,6 @@
 import os
 import boto3
-import time
+# import time
 
 
 ###########################################################

{water_column_sonar_processing-0.0.1/src/model → water_column_sonar_processing-0.0.3/src}/cruise/create_empty_zarr_store.py

@@ -1,17 +1,18 @@
 import os
 import numcodecs
 import numpy as np
-from ..utility.cleaner import Cleaner
-from ..aws.dynamodb_manager import DynamoDBManager
-from ..aws.s3_manager import S3Manager
-from ..zarr.zarr_manager import ZarrManager
+
+from utility.cleaner import Cleaner
+from aws_manager.dynamodb_manager import DynamoDBManager
+from aws_manager.s3_manager import S3Manager
+from zarr_manager.zarr_manager import ZarrManager
 
 numcodecs.blosc.use_threads = False
 numcodecs.blosc.set_nthreads(1)
 
 TEMPDIR = "/tmp"
 
-# TODO: when ready switch to version 3 of zarr spec
+# TODO: when ready switch to version 3 of zarr_manager spec
 # ZARR_V3_EXPERIMENTAL_API = 1
 # creates the latlon data: foo = ep.consolidate.add_location(ds_Sv, echodata)
 
@@ -33,17 +34,17 @@ class CreateEmptyZarrStore:
             object_prefix: str,
             cruise_name: str,
     ) -> None:
-        print('uploading zarr store to s3')
+        print('uploading zarr_manager store to s3')
         s3_manager = S3Manager()
         #
         print('Starting upload with thread pool executor.')
         # # 'all_files' is passed a list of lists: [[local_path, s3_key], [...], ...]
         all_files = []
-        for subdir, dirs, files in os.walk(f"{local_directory}/{cruise_name}.zarr"):
+        for subdir, dirs, files in os.walk(f"{local_directory}/{cruise_name}.zarr_manager"):
             for file in files:
                 local_path = os.path.join(subdir, file)
-                # 'level_2/Henry_B._Bigelow/HB0806/EK60/HB0806.zarr/.zattrs'
-                s3_key = f'{object_prefix}/{cruise_name}.zarr{local_path.split(f"{cruise_name}.zarr")[-1]}'
+                # 'level_2/Henry_B._Bigelow/HB0806/EK60/HB0806.zarr_manager/.zattrs'
+                s3_key = f'{object_prefix}/{cruise_name}.zarr_manager{local_path.split(f"{cruise_name}.zarr_manager")[-1]}'
                 all_files.append([local_path, s3_key])
         #
         # print(all_files)
@@ -97,10 +98,10 @@ class CreateEmptyZarrStore:
             new_width = int(consolidated_zarr_width)
             print(f"new_width: {new_width}")
             #################################################################
-            store_name = f"{cruise_name}.zarr"
+            store_name = f"{cruise_name}.zarr_manager"
             print(store_name)
             ################################################################
-            # Delete existing zarr store if it exists
+            # Delete existing zarr_manager store if it exists
             s3_manager = S3Manager()
             zarr_prefix = os.path.join("level_2", ship_name, cruise_name, sensor_name)
             child_objects = s3_manager.get_child_objects(
@@ -112,7 +113,7 @@ class CreateEmptyZarrStore:
                     objects=child_objects,
                 )
             ################################################################
-            # Create new zarr store
+            # Create new zarr_manager store
             zarr_manager = ZarrManager()
             new_height = len(zarr_manager.get_depth_values(
                 min_echo_range=cruise_min_echo_range,
@@ -156,11 +157,11 @@ class CreateEmptyZarrStore:
             # TODO: update enum in dynamodb
             #################################################################
         except Exception as err:
-            print(f"Problem trying to create new cruise zarr store: {err}")
+            print(f"Problem trying to create new cruise zarr_manager store: {err}")
         finally:
             cleaner = Cleaner()
             cleaner.delete_local_files()
-        print("Done creating cruise level zarr store")
+        print("Done creating cruise level zarr_manager store")
 
 
 ###########################################################

{water_column_sonar_processing-0.0.1/src/model → water_column_sonar_processing-0.0.3/src}/cruise/resample_regrid.py

@@ -6,15 +6,16 @@ import numpy as np
 import xarray as xr
 import pandas as pd
 
-from ..geospatial.geometry_manager import GeoManager
-from ..aws.dynamodb_manager import DynamoDBManager
-from ..zarr.zarr_manager import ZarrManager
+from aws_manager.dynamodb_manager import DynamoDBManager
+from zarr_manager.zarr_manager import ZarrManager
+from geometry_manager.geometry_manager import GeometryManager
+
 
 numcodecs.blosc.use_threads = False
 numcodecs.blosc.set_nthreads(1)
 
 
-# TODO: when ready switch to version 3 of zarr spec
+# TODO: when ready switch to version 3 of zarr_manager spec
 #  ZARR_V3_EXPERIMENTAL_API = 1
 #  creates the latlon data: foo = ep.consolidate.add_location(ds_Sv, echodata)
 
@@ -114,7 +115,7 @@ class ResampleRegrid:
     ) -> None:
         """
         The goal here is to interpolate the data against the depth values already populated
-        in the existing file level zarr stores. We open the cruise-level store with zarr for
+        in the existing file level zarr_manager stores. We open the cruise-level store with zarr_manager for
         read/write operations. We open the file-level store with Xarray to leverage tools for
         resampling and subsetting the data.
         """
@@ -122,8 +123,8 @@ class ResampleRegrid:
         try:
             zarr_manager = ZarrManager()
             # s3_manager = S3Manager()
-            geo_manager = GeoManager()
-            # get zarr store
+            geo_manager = GeometryManager()
+            # get zarr_manager store
             output_zarr_store = zarr_manager.open_s3_zarr_store_with_zarr(
                 ship_name=ship_name,
                 cruise_name=cruise_name,
@@ -156,7 +157,7 @@ class ResampleRegrid:
                 # TODO: filter rows by enum success, filter the dataframe just for enums >= LEVEL_1_PROCESSING
                 #  df[df['PIPELINE_STATUS'] < PipelineStatus.LEVEL_1_PROCESSING] = np.nan
 
-                # Get index from all cruise files. Note: should be based on which are included in cruise.
+                # Get index_manager from all cruise files. Note: should be based on which are included in cruise.
                 index = cruise_df.index[cruise_df['FILE_NAME'] == f"{file_name_stem}.raw"][0]
 
                 # get input store
@@ -168,7 +169,7 @@ class ResampleRegrid:
                 )
                 #########################################################################
                 # [3] Get needed indices
-                # Offset from start index to insert new data. Note that missing values are excluded.
+                # Offset from start index_manager to insert new data. Note that missing values are excluded.
                 ping_time_cumsum = np.insert(
                     np.cumsum(cruise_df['NUM_PING_TIME_DROPNA'].dropna().to_numpy(dtype=int)),
                     obj=0,
@@ -222,7 +223,7 @@ class ResampleRegrid:
                 print(f"start_ping_time_index: {start_ping_time_index}, end_ping_time_index: {end_ping_time_index}")
 
                 #########################################################################
-                # write Sv values to cruise-level-zarr-store
+                # write Sv values to cruise-level-zarr_manager-store
                 for channel in range(len(input_xr.channel.values)):  # doesn't like being written in one fell swoop :(
                     output_zarr_store.Sv[
                         :,

{water_column_sonar_processing-0.0.1/src/model/geospatial → water_column_sonar_processing-0.0.3/src/geometry_manager}/geometry_manager.py

@@ -3,8 +3,8 @@ import numpy as np
 import geopandas
 import pandas as pd
 
-from ..utility.cleaner import Cleaner
-from ..aws.s3_manager import S3Manager
+from utility.cleaner import Cleaner
+from aws_manager.s3_manager import S3Manager
 
 """
 //  [Decimal / Places / Degrees	/ Object that can be recognized at scale / N/S or E/W at equator, E/W at 23N/S, E/W at 45N/S, E/W at 67N/S]
@@ -19,7 +19,7 @@ from ..aws.s3_manager import S3Manager
 """
 
 
-class GeoManager:
+class GeometryManager:
     #######################################################
     def __init__(
             self,

{water_column_sonar_processing-0.0.1/src/model/geospatial → water_column_sonar_processing-0.0.3/src/geometry_manager}/pmtile_generation.py

@@ -23,7 +23,7 @@ class PMTileGeneration(object):
 
     #######################################################
     def generate_geojson_feature_collection(self):
-        # This was used to read from noaa-wcsd-zarr-pds bucket geojson files and then to
+        # This was used to read from noaa-wcsd-zarr_manager-pds bucket geojson files and then to
         # generate the geopandas dataframe which could be exported to another comprehensive
         # geojson file. That
         result = list(Path("/Users/r2d2/Documents/echofish/geojson").rglob("*.json"))

water_column_sonar_processing-0.0.1/src/model/index/index.py → water_column_sonar_processing-0.0.3/src/index_manager/index_manager.py

@@ -4,8 +4,7 @@ import pandas as pd
 from datetime import datetime
 from concurrent.futures import ThreadPoolExecutor
 from concurrent.futures import as_completed
-from ..aws.s3_manager import S3Manager
-
+from aws_manager.s3_manager import S3Manager
 
 class IndexManager:
 
@@ -194,7 +193,7 @@ class IndexManager:
         return calibration_statuses
 
     #################################################################
-    # def index(  # TODO: get rid of this?
+    # def index_manager(  # TODO: get rid of this?
     #         self
     # ):
     #     start_time = datetime.now()  # used for benchmarking

{water_column_sonar_processing-0.0.1/src/model → water_column_sonar_processing-0.0.3/src}/model.py

@@ -1,10 +1,10 @@
 import os
 import json
 import numpy as np
-from src.model.aws.s3_manager import S3Manager
-from src.model.aws.sns_manager import SNSManager
-from src.model.aws.dynamodb_manager import DynamoDBManager
-
+from aws_manager.s3_manager import S3Manager
+from aws_manager.s3fs_manager import S3FSManager
+from aws_manager.sns_manager import SNSManager
+from aws_manager.dynamodb_manager import DynamoDBManager
 
 ###########################################################
 class Model:
@@ -21,6 +21,8 @@ class Model:
 
     def execute(self):
         input_s3_manager = S3Manager()  # TODO: Need to allow passing in of credentials when writing to protected bucket
+        s3fs_manager = S3FSManager() # TODO: delete this
+        print(s3fs_manager) # TODO: delete this
         output_s3_manager = S3Manager()
         # TODO: s3fs?
         sns_manager = SNSManager()
@@ -85,7 +87,7 @@ class Model:
                 ':sh': {'S': ship_name},
                 ':st': {'S': '2006-04-06T11:34:07.288Z'},
                 ':zb': {'S': 'r2d2-dev-echofish2-118234403147-echofish-dev-output'},
-                ':zp': {'S': 'level_1/David_Starr_Jordan/DS0604/EK60/DSJ0604-D20060406-T113407.zarr'},
+                ':zp': {'S': 'level_1/David_Starr_Jordan/DS0604/EK60/DSJ0604-D20060406-T113407.zarr_manager'},
             },
             update_expression=(
                 'SET '

{water_column_sonar_processing-0.0.1/src/model → water_column_sonar_processing-0.0.3/src}/utility/cleaner.py

@@ -7,9 +7,9 @@ import shutil
 class Cleaner:
     @staticmethod
     def delete_local_files(
-            file_types=['*.raw*', '*.zarr']  # '*.json'
+            file_types=['*.raw*', '*.zarr_manager']  # '*.json'
     ):
-        print('Deleting all local raw and zarr files')
+        print('Deleting all local raw and zarr_manager files')
         for i in file_types:
             for j in glob.glob(i):
                 if os.path.isdir(j):

{water_column_sonar_processing-0.0.1 → water_column_sonar_processing-0.0.3/src/water_column_sonar_processing.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: water-column-sonar-processing
-Version: 0.0.1
+Version: 0.0.3
 Summary: A processing tool for water column sonar data.
 Author-email: Rudy Klucik <rudy.klucik@noaa.gov>
 Project-URL: Homepage, https://github.com/CI-CMG/water-column-sonar-processing
@@ -12,10 +12,10 @@ Requires-Python: >=3.10
 Description-Content-Type: text/markdown
 License-File: LICENSE
 
-# water-column-sonar-processing
+# Water Column Sonar Processing
 Processing tool for converting L0 data to L1 and L2 as well as generating geospatial information
 
-## Setting up the Python Environment
+# Setting up the Python Environment
 > Python 3.10.12
 
 # MacOS Pyenv Installation Instructions
@@ -33,8 +33,7 @@ Processing tool for converting L0 data to L1 and L2 as well as generating geospa
          1. ```eval "$(pyenv virtualenv-init -)"```
   3. Open a new terminal
   4. Install Python version
-     1. ```env PYTHON_CONFIGURE_OPTS="--enable-shared"```
-     2. ```env CONFIGURE_OPTS='--enable-optimizations' arch -arm64 pyenv install 3.10.12```
+     1. ```env CONFIGURE_OPTS='--enable-optimizations' arch -arm64 pyenv install 3.10.12```
   5. Create virtual env (to delete 'pyenv uninstall 3.10.12/water-column-sonar-processing')
      1. ```pyenv virtualenv 3.10.12 water-column-sonar-processing```
   6. Set local version of python (if not done already)
@@ -42,7 +41,7 @@ Processing tool for converting L0 data to L1 and L2 as well as generating geospa
      2. ```pyenv local 3.10.12 water-column-sonar-processing```
      3. ```pyenv activate water-column-sonar-processing```
 
-## Setting up IntelliJ
+# Setting up IntelliJ
 
   1. Install the IntelliJ Python plugin
   2. Set up pyenv
@@ -55,35 +54,40 @@ Processing tool for converting L0 data to L1 and L2 as well as generating geospa
      2. Facets -> + -> Python 
      3. Set interpreter 
 
-## Installing Dependencies
+# Installing Dependencies
 
   1. Add dependencies with versions to requirements.txt
   2. ```pip install --upgrade pip && pip install -r requirements_dev.txt```
 
 
-## Pytest
+# Pytest
 ```commandline
 pytest --disable-warnings
 ```
 
-## Instructions
+# Instructions
 Following this tutorial:
 https://packaging.python.org/en/latest/tutorials/packaging-projects/
 
-## To Publish To TEST
+# To Publish To TEST
 ```commandline
 python -m build
 python -m twine upload --repository testpypi dist/*
 pytho -m pip install --index-url https://test.pypi.org/simple/ hello-pypi-rudy-klucik
 python
 ```
-```python
+```
 from water-column-sonar-processing import ZarrManager
 example.add_one(2)
 ```
 
-## To Publish To PROD
+# To Publish To PROD
 ```commandline
 python -m build
 python -m twine upload --repository pypi dist/*
 ```
+
+
+# Linting
+Ruff
+https://plugins.jetbrains.com/plugin/20574-ruff