vscodenb 0.1.7__tar.gz

vscodenb-0.1.7/.devcontainer/Dockerfile

@@ -0,0 +1,29 @@
+FROM mcr.microsoft.com/devcontainers/base:jammy
+
+# ARG PIXI_VERSION=v0.42.1
+
+#RUN apt-get update && apt-get install -y curl
+
+#RUN curl -fsSL https://pixi.sh/install.sh | bash
+# RUN wget -qO- https://pixi.sh/install.sh | sh
+
+# RUN curl -L -o /usr/local/bin/pixi -fsSL --compressed "https://github.com/prefix-dev/pixi/releases/download/${PIXI_VERSION}/pixi-$(uname -m)-unknown-linux-musl" \
+    # && chmod +x /usr/local/bin/pixi \
+    # && pixi info
+# && chmod +x /usr/local/bin/pixi  && pixi info
+
+# set some user and workdir settings to work nicely with vscode
+USER vscode
+WORKDIR /home/vscode
+
+RUN wget -qO- https://pixi.sh/install.sh | /bin/bash
+# RUN wget -qO- https://pixi.sh/install.sh | sh
+
+
+# RUN echo 'eval "$(pixi completion -s bash)"' >> /home/vscode/.bashrc
+# RUN echo 'eval "$(pixi shell-hook -s bash)"' >> /home/vscode/.bashrc
+
+# # RUN --mount=type=secret,id=prefix_dev_token,uid=1000 \
+#     test -s /run/secrets/prefix_dev_token \
+#     && pixi auth login --token "$(cat /run/secrets/prefix_dev_token)" https://repo.prefix.dev
+

vscodenb-0.1.7/.devcontainer/devcontainer.json

@@ -0,0 +1,100 @@
+{
+	"build": {
+		"dockerfile": "./Dockerfile",
+		"context": "."
+	},
+	"features": {
+		"ghcr.io/devcontainers/features/common-utils:2": {
+			"installZsh": "true",
+			"username": "vscode",
+			"userUid": "1000",
+			"userGid": "1000",
+			"upgradePackages": "true"
+		},
+		"ghcr.io/devcontainers/features/git:1": {
+            "version": "latest",
+            "ppa": "false"
+        }
+	},	
+	// Use 'forwardPorts' to make a list of ports inside the container available locally.
+	// "forwardPorts": [5000, 5001],
+	// [Optional] To reuse of your local HTTPS dev cert:
+	//
+	// 1. Export it locally using this command:
+	//    * Windows PowerShell:
+	//        dotnet dev-certs https --trust; dotnet dev-certs https -ep "$env:USERPROFILE/.aspnet/https/aspnetapp.pfx" -p "SecurePwdGoesHere"
+	//    * macOS/Linux terminal:
+	//        dotnet dev-certs https --trust; dotnet dev-certs https -ep "${HOME}/.aspnet/https/aspnetapp.pfx" -p "SecurePwdGoesHere"
+	// 
+	// 2. Uncomment these 'remoteEnv' lines:
+	//    "remoteEnv": {
+	// 	      "ASPNETCORE_Kestrel__Certificates__Default__Password": "SecurePwdGoesHere",
+	//        "ASPNETCORE_Kestrel__Certificates__Default__Path": "/home/vscode/.aspnet/https/aspnetapp.pfx",
+	//    },
+	//
+	// 3. Do one of the following depending on your scenario:
+	//    * When using GitHub Codespaces and/or Remote - Containers:
+	//      1. Start the container
+	//      2. Drag ~/.aspnet/https/aspnetapp.pfx into the root of the file explorer
+	//      3. Open a terminal in VS Code and run "mkdir -p /home/vscode/.aspnet/https && mv aspnetapp.pfx /home/vscode/.aspnet/https"
+	//
+	//    * If only using Remote - Containers with a local container, uncomment this line instead:
+	//      "mounts": [ "source=${env:HOME}${env:USERPROFILE}/.aspnet/https,target=/home/vscode/.aspnet/https,type=bind" ],
+	// Use 'postCreateCommand' to run commands after the container is created.
+	// "postCreateCommand": "dotnet restore",
+	// Set `remoteUser` to `root` to connect as root instead. More info: https://aka.ms/vscode-remote/containers/non-root.
+	"remoteUser": "vscode",
+    "customizations": {
+      "vscode": {
+        "settings": {},
+        "extensions": [
+          "ms-python.python", 
+          "charliermarsh.ruff", 
+          "GitHub.copilot",
+		  "anthropic.claude-code",
+          "ms-vscode-remote.remote-containers",
+          "ms-toolsai.jupyter",
+          "eamodio.gitlens",
+          "yzhang.markdown-all-in-one",
+          "tamasfe.even-better-toml",
+		  "quarto.quarto",
+        ]
+      }
+    },	
+	"postCreateCommand": "pixi install --locked",
+}
+
+
+
+// {
+//     "name": "my-project",
+//     "build": {
+//       "dockerfile": "Dockerfile",
+//       "context": "..",
+//       // "options": [
+//       //     "--secret",
+//       //     "id=prefix_dev_token,env=PREFIX_DEV_TOKEN",
+//       // ],      
+//     },
+// //    "remoteUser": "vscode", // this must match the USER in the Dockerfile
+//     "customizations": {
+//       "vscode": {
+//         "settings": {},
+//         "extensions": [
+//           "ms-python.python", 
+//           "charliermarsh.ruff", 
+//           "GitHub.copilot",
+//           "ms-vscode-remote.remote-containers",
+//           "ms-toolsai.jupyter",
+//           "eamodio.gitlens",
+//           "yzhang.markdown-all-in-one",
+//           "tamasfe.even-better-toml",				
+//         ]
+//       }
+//     },
+//     // "features": {
+//     //   "ghcr.io/devcontainers/features/docker-in-docker:2": {}
+//     // },
+//     // "mounts": ["source=${localWorkspaceFolderBasename}-pixi,target=${containerWorkspaceFolder}/.pixi,type=volume"],
+//     // "postCreateCommand": "sudo chown vscode .pixi && pixi install",
+// }

vscodenb-0.1.7/.github/workflows/conda-release.yml

@@ -0,0 +1,107 @@
+name: Build and upload conda packages
+
+# # only run when a release tag is pushed to main
+# on:
+#   release:
+#     types:
+#       - 'released'
+#   # push:
+#   #   branches:
+#   #     - 'main'    
+
+# # workflow_dispatch:        # Un comment line if you also want to trigger action manually
+
+
+on:
+  push:
+    tags:
+      - v[0-9]+.[0-9]+
+      - v[0-9]+.[0-9]+.[0-9]+
+      - v[0-9]+.[0-9]+.[0-9]+.rc[0-9]+      
+
+jobs:
+
+  create_changelog_and_release_with_new_tag:
+
+    runs-on: ubuntu-latest
+    
+    permissions:
+        contents: write
+        pull-requests: write
+        repository-projects: write
+
+    steps:
+      - name: Checkout Code
+        uses: actions/checkout@v3
+
+      - name: Update CHANGELOG
+        id: changelog
+        uses: requarks/changelog-action@v1
+        with:
+          token: ${{ github.token }}
+          tag: ${{ github.ref_name }}
+          includeInvalidCommits: true
+          reverseOrder: true
+          useGitmojis: false
+          excludeTypes: build,docs,other,style
+
+      - name: Create Release
+        uses: ncipollo/release-action@v1.12.0
+        with:
+          allowUpdates: true
+          draft: false
+          makeLatest: true
+          name: ${{ github.ref_name }}
+          body: ${{ steps.changelog.outputs.changes }}
+          token: ${{ github.token }}
+
+      - name: Commit CHANGELOG.md
+        uses: stefanzweifel/git-auto-commit-action@v4
+        with:
+          branch: main
+          commit_message: 'docs: update CHANGELOG.md for ${{ github.ref_name }} [skip ci]'
+          file_pattern: CHANGELOG.md
+
+
+  conda_deployment_with_new_tag:
+
+    name: Conda deployment of package for platform ${{ matrix.os }} 
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        # os: [ubuntu-latest, windows-latest]
+        # os: [macOS-latest, macos-13, ubuntu-latest]
+        # os: [macOS-latest, macos-13, ubuntu-latest, windows-latest]
+        os: [macOS-latest, ubuntu-latest]
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Conda environment creation and activation
+        uses: conda-incubator/setup-miniconda@v3
+        with:
+          miniconda-version: "latest"
+          environment-file: conda-build/build_env.yaml 
+          auto-update-conda: false
+          auto-activate-base: false
+          show-channel-urls: true
+
+      # - name: Install dependencies
+      #   run: |
+      #     pip install --upgrade pip
+      #     pip install -r requirements.txt
+
+      # - name: Test with pytest
+      #   run: |
+      #     pip install pytest
+      #     pytest test
+
+      - name: Build and upload the conda packages
+        uses: munch-group/action-conda-build-upload@v0.1.26
+        with:
+          meta_yaml_dir: conda-build
+          user: munch-group
+          # label: auto
+          token: ${{ secrets.ANACONDA_TOKEN }}
+          overwrite: true
+    

vscodenb-0.1.7/.github/workflows/pypi-release.yml

@@ -0,0 +1,127 @@
+name: Build and upload pypi packages
+
+on:
+  push:
+#   release:
+#     types:
+#       - 'released'
+#   branches:
+#     - 'main'      
+    tags:
+      - v[0-9]+.[0-9]+
+      - v[0-9]+.[0-9]+.[0-9]+
+      - v[0-9]+.[0-9]+.[0-9]+.rc[0-9]+
+
+jobs:
+  build-sdist:
+    name: Build source distribution
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v4
+      with:
+        persist-credentials: false
+    - name: Set up Python
+      uses: actions/setup-python@v5
+      with:
+        python-version: "3.x"
+
+    - name: Install build
+      run: python3 -m pip install build
+
+    - name: Build source tarball
+      run: python3 -m build --sdist
+
+    - name: Store the source distribution
+      uses: actions/upload-artifact@v4
+      with:
+        name: python-sdist
+        path: dist/*.tar.gz
+
+  build-wheels:
+    name: Build universal wheel
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v4
+      with:
+        persist-credentials: false
+
+    - name: Set up Python
+      uses: actions/setup-python@v5
+      with:
+        python-version: "3.x"
+
+    - name: Install build
+      run: python3 -m pip install build
+
+    - name: Build wheel
+      run: python3 -m build --wheel
+
+    - name: Store the wheel
+      uses: actions/upload-artifact@v4
+      with:
+        name: python-wheels
+        path: dist/*.whl
+
+  # Uncomment this job if you add compiled extensions to your package
+  # build-wheels-multiplatform:
+  #   name: Build wheels on ${{ matrix.os }}
+  #   runs-on: ${{ matrix.os }}
+  #   strategy:
+  #     matrix:
+  #       os: [ubuntu-latest, macos-14, windows-latest]
+  #
+  #   steps:
+  #   - uses: actions/checkout@v4
+  #     with:
+  #       persist-credentials: false
+  #
+  #   # Set up QEMU for ARM64 Linux builds
+  #   - name: Set up QEMU
+  #     if: runner.os == 'Linux'
+  #     uses: docker/setup-qemu-action@v3
+  #     with:
+  #       platforms: arm64
+  #
+  #   - name: Build wheels
+  #     uses: pypa/cibuildwheel@v2.22
+  #     env:
+  #       CIBW_BUILD: cp39-* cp310-* cp311-* cp312-* cp313-*
+  #       # Skip musllinux (not commonly needed) and 32-bit builds
+  #       CIBW_SKIP: "*-musllinux_* *-win32 *-manylinux_i686"
+  #       # Build ARM64 wheels on Linux using QEMU
+  #       CIBW_ARCHS_LINUX: x86_64 aarch64
+  #       # macOS: macos-13 builds x86_64 ONLY, macos-14 builds arm64 ONLY
+  #       CIBW_ARCHS_MACOS: ${{ matrix.os == 'macos-14' && 'arm64' || 'x86_64' }}
+  #       # Windows: only x86_64 (most common)
+  #       CIBW_ARCHS_WINDOWS: AMD64
+  #
+  #   - name: Store the wheels
+  #     uses: actions/upload-artifact@v4
+  #     with:
+  #       name: python-wheels-${{ matrix.os }}
+  #       path: wheelhouse/*.whl
+        
+        
+  publish-to-pypi:
+    name: Publish Python distribution to PyPI
+    needs:
+    - build-sdist
+    - build-wheels
+    runs-on: ubuntu-latest
+
+    steps:
+    - name: Download all artifacts
+      uses: actions/download-artifact@v4
+      with:
+        path: dist/
+        pattern: python-*
+        merge-multiple: true
+
+    - name: Publish distribution to PyPI
+      uses: pypa/gh-action-pypi-publish@release/v1
+      with:
+        user: __token__
+        password: ${{ secrets.PYPI_API_TOKEN }}
+        skip-existing: true      

vscodenb-0.1.7/.github/workflows/quarto-publish.yml

@@ -0,0 +1,68 @@
+on:
+  push:
+    branches:
+      - master
+
+name: Render and Publish
+
+# you need these permissions to publish to GitHub pages
+permissions: 
+    contents: write
+    pages: write
+
+jobs:
+  build-deploy:
+    runs-on: ubuntu-latest
+    
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+        
+      - uses: actions/setup-python@v4
+        with:
+          python-version: '3.x' 
+      - run: pip install jupyter #pandas pyyaml tabulate pycryptodome>3.10 pbkdf2 cryptography 
+
+      # - uses: r-lib/actions/setup-r@v2
+      # - uses: r-lib/actions/setup-r-dependencies@v2
+      #   with:
+      #     packages: |
+      #       any::downloadthis
+      #     # extra-packages: |
+      #     #   any::downloadthis
+
+      - name: Set up Quarto
+        uses: quarto-dev/quarto-actions/setup@v2
+        with:
+          # To install LaTeX to build PDF book 
+          tinytex: true 
+          # uncomment below and fill to pin a version
+          # version: SPECIFIC-QUARTO-VERSION-HERE
+
+      - name: Render Quarto Project - default profile
+        uses: quarto-dev/quarto-actions/render@v2
+        env:
+          QUARTO_PROFILE: default
+        with:
+          path: docs
+          to: html
+
+      # - name: Render Quarto Project - draft profile
+      #   uses: quarto-dev/quarto-actions/render@v2
+      #   env:
+      #     QUARTO_PROFILE: slides
+      #   with:
+      #     path: .
+      #     to: html
+
+      - name: Publish to GitHub Pages
+        uses: quarto-dev/quarto-actions/publish@v2
+        with:
+          target: gh-pages
+          path: docs
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # this secret is always available for github actions
+
+    permissions:
+      contents: write        
+#     pages: write

vscodenb-0.1.7/.gitignore

@@ -0,0 +1,146 @@
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+pip-wheel-metadata/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+.python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+steps
+
+/.quarto/
+_book/
+
+# apple double files
+._*
+
+# Pixi
+.pixi/
+pixi.lock
+
+.claude-uuid
+
+.DS_Store
+